Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000843.1

Orthogroup ID

OG0014856

Physical Location & Seq

Genomic Coordinates Reverse (-)

13228 .. 13605

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000843.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggagagtctaagaagagaagaaaggtagagtcagagtcttcctctgcaaccgcccagggccgccgagactggacggagctcccggacgacgttacggcgtggatactagtactgtcaaatccgaaagcaattgatatcctaaaagagtatcagatggtctgcaagacgtggcgcagagtttgctgcaactactctattctgtggcgcaccatcgacatagatttccgtcacaaaaagggcaagttggactcggtactgaagatgtgccgccgcgcagttgatcgtagctcaggtactttggttgttcttactctccagaactttcgcaccggcactgataagctcctcaagtacatcactaacaggtatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

125

Amino Acids

14.59

Weight (kDa)

9.83

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014856)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015631 RchiOBHm_Chr5g0015681
rosa_laevigata	RLG00000032215 RLG00000032218
rosa_multiflora	Rmu_sc0000843.1_g000007 Rmu_sc0003230.1_g000004 Rmu_sc0003230.1_g000006
rosa_roxburghii	Rroxscaffold_1G00060840
rosa_rugosa	Rorug01G0078200 Rorug01G0078200 Rorug05G0029100
rosa_samantha	Rh5BG121000 Rh5BG121600 Rh5CG131400 Rh5CG131800 Rh5DG120000 Rh5DG120400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	276
AciI	CCGC	4 cut(s)	54, 64, 271, 274
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	114, 258, 298, 356
AhlI	ACTAGT	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	4 cut(s)	82, 291, 346, 375
AluI	AGCT	4 cut(s)	82, 291, 346, 375
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	186
AspLEI	GCGC	3 cut(s)	177, 210, 278
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	151, 221
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	2 cut(s)	110, 376
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	4 cut(s)	64, 187, 271, 274
BlsI	GCNGC	4 cut(s)	65, 188, 272, 275
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	59, 86
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	59, 86
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	57, 58
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	57, 58
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	86, 333
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	4 cut(s)	54, 64, 271, 274
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	57, 58
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	12, 292
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	3 cut(s)	177, 210, 278
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	57, 84
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	336
CfoI	GCGC	3 cut(s)	177, 210, 278
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	4 cut(s)	113, 257, 297, 355
CviJI	RGCY	5 cut(s)	63, 82, 291, 346, 375
CviKI_1	RGCY	5 cut(s)	63, 82, 291, 346, 375
CviQI	GTAC	4 cut(s)	113, 257, 297, 355
DdeI	CTNAG	2 cut(s)	12, 292
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	84
FaiI	YATR	2 cut(s)	221, 372
Fnu4HI	GCNGC	4 cut(s)	64, 187, 271, 274
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	4 cut(s)	64, 187, 271, 274
FspBI	CTAG	2 cut(s)	110, 376
GlaI	GCGC	3 cut(s)	176, 209, 277
GluI	GCNGC	4 cut(s)	64, 187, 271, 274
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	86, 333
HhaI	GCGC	3 cut(s)	177, 210, 278
Hin6I	GCGC	3 cut(s)	175, 208, 276
HinP1I	GCGC	3 cut(s)	175, 208, 276
HinfI	GANTC	4 cut(s)	8, 32, 38, 251
HpaII	CCGG	2 cut(s)	86, 333
Hpy188I	TCNGA	3 cut(s)	37, 126, 156
Hpy188III	TCNNGA	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	2 cut(s)	93, 170
HpyCH4V	TGCA	3 cut(s)	50, 165, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	2 cut(s)	12, 292
HpySE526I	ACGT	2 cut(s)	93, 170
HspAI	GCGC	3 cut(s)	175, 208, 276
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	3 cut(s)	79, 87, 351
LpnPI	CCDG	8 cut(s)	44, 58, 71, 99, 279, 332, 346, 352
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	110, 376
MaeII	ACGT	2 cut(s)	93, 170
MaeIII	GTNAC	2 cut(s)	94, 230
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	28, 33, 33, 274
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	4 cut(s)	17, 41, 47, 245
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	55, 359
MspI	CCGG	2 cut(s)	86, 333
MspR9I	CCNGG	2 cut(s)	59, 86
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	230
PasI	CCCWGGG	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	4 cut(s)	65, 188, 272, 275
PleI	GAGTC	4 cut(s)	16, 40, 46, 245
PpsI	GAGTC	4 cut(s)	16, 40, 46, 245
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	61
RsaI	GTAC	4 cut(s)	114, 258, 298, 356
RsaNI	GTAC	4 cut(s)	113, 257, 297, 355
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	4 cut(s)	64, 187, 271, 274
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	4 cut(s)	17, 41, 47, 245
ScrFI	CCNGG	2 cut(s)	59, 86
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	30, 84, 96, 173, 293, 298, 348, 371, 377
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	4 cut(s)	54, 64, 271, 274
SspMI	CTAG	2 cut(s)	110, 376
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	57, 84
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	2 cut(s)	96, 173
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	132
TatI	WGTACW	2 cut(s)	112, 354
TauI	GCSGC	3 cut(s)	66, 273, 276
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	230
TspGWI	ACGGA	2 cut(s)	92, 218
TspRI	CASTG	1 cut(s)	343
XspI	CTAG	2 cut(s)	110, 376
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.