Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014856

Physical Location & Seq

Genomic Coordinates Reverse (-)

10858253 .. 10859805

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGCCACCGCGCCGTTGATCGTAGCTCAGGTACTTTGGTTGTTCTTACTCTCCAGAACTTCCGCACCGGCACTGATAAGCTCCTCAAGTACATCACTAACAGTTGCAGAGGAATCAAACGCCTAACTTTGGCGAATTGCGTGAAAATAACAGATGAGGGGTTGAGGGTAGTAGCTTCCAAACTTCCGTTGTTGGAGGACCTTGGCATTTCACACGGCTCAGTCTCGCAAAAAACTGTGGAAGTAATTGGGAAATCTTGCCCTCTTTTGAAATCATTGAGATGGAACAAAAATATTGAAATTGATACTAAACGACTGGATGATGACCGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACAGCATCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGAAGATATTATTAATTATAGTTGTCATTGGAGTCACTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

151

Amino Acids

16.74

Weight (kDa)

9.06

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014856)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015631 RchiOBHm_Chr5g0015681
rosa_laevigata	RLG00000032215 RLG00000032218
rosa_multiflora	Rmu_sc0000843.1_g000007 Rmu_sc0003230.1_g000004 Rmu_sc0003230.1_g000006
rosa_roxburghii	Rroxscaffold_1G00060840
rosa_rugosa	Rorug01G0078200 Rorug01G0078200 Rorug05G0029100
rosa_samantha	Rh5BG121000 Rh5BG121600 Rh5CG131400 Rh5CG131800 Rh5DG120000 Rh5DG120400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	10, 64
AfaI	GTAC	2 cut(s)	34, 92
AfiI	CCNNNNNNNGG	2 cut(s)	130, 334
AgsI	TTSAA	2 cut(s)	271, 299
AluBI	AGCT	4 cut(s)	27, 82, 176, 347
AluI	AGCT	4 cut(s)	27, 82, 176, 347
Alw26I	GTCTC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	344
AseI	ATTAAT	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	199
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BauI	CACGAG	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmsI	GCATC	3 cut(s)	345, 379, 394
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	202, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 334
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	202, 408
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	130, 334
BseMII	CTCAG	2 cut(s)	42, 234
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	130, 334
BsmAI	GTCTC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	19, 450
BspACI	CCGC	2 cut(s)	10, 64
BspCNI	CTCAG	2 cut(s)	41, 233
BspFNI	CGCG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	202, 408
BssMI	GATC	2 cut(s)	19, 450
BssSI	CACGAG	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	202, 408
Bst2BI	CACGAG	1 cut(s)	374
Bst4CI	ACNGT	3 cut(s)	104, 238, 329
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	28, 220
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	22, 453
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	19, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 376
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	33, 91
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	6 cut(s)	27, 82, 176, 219, 338, 347
CviKI_1	RGCY	6 cut(s)	27, 82, 176, 219, 338, 347
CviQI	GTAC	2 cut(s)	33, 91
DdeI	CTNAG	2 cut(s)	28, 220
DpnI	GATC	2 cut(s)	21, 452
DpnII	GATC	2 cut(s)	19, 450
Eco130I	CCWWGG	2 cut(s)	202, 408
Eco47I	GGWCC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	202, 408
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	202, 408
FaeI	CATG	1 cut(s)	362
FaiI	YATR	3 cut(s)	341, 360, 429
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	345
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	114, 388, 442
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	365
HpyCH4III	ACNGT	3 cut(s)	104, 238, 329
HpyCH4V	TGCA	3 cut(s)	108, 332, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 376
HpyF3I	CTNAG	2 cut(s)	28, 220
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	19, 450
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	15, 68, 82, 302, 333, 369
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	3 cut(s)	345, 379, 394
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	2 cut(s)	21, 452
MboI	GATC	2 cut(s)	19, 450
MboII	GAAGA	1 cut(s)	425
MluCI	AATT	4 cut(s)	136, 246, 300, 424
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	6 cut(s)	95, 104, 151, 159, 190, 273
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	344, 376
NdeII	GATC	2 cut(s)	19, 450
NlaIII	CATG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	114, 388
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	34, 92
RsaNI	GTAC	2 cut(s)	33, 91
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	19, 450
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	451
SetI	ASST	6 cut(s)	29, 34, 84, 178, 204, 349
SfaNI	GCATC	3 cut(s)	345, 379, 394
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	136, 246, 300, 424
SsiI	CCGC	2 cut(s)	10, 64
SspI	AATATT	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	202, 408
TaaI	ACNGT	3 cut(s)	104, 238, 329
TasI	AATT	4 cut(s)	136, 246, 300, 424
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	114, 388
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.