Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014856

Physical Location & Seq

Genomic Coordinates Reverse (-)

12136838 .. 12140784

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTACAATCACCAAACAACACATTGTTATAGTAACCGGAGGCATTGTAAACCAAGATTCAGGGCTAGCTAGTAGAATTAAAAGCTTGACAAGCCAAACGGTGAGCTGCTTCGTTAGAGTCACGATACACATGAGTGTAGAGCCAGATAAGTCTGCAAGAGACAAGGGCGGCCGAGACTGGACAGAGCTCCCGGACGACGTTACGGCACGGATACTAAAAGAGTATCAGATGGTCTGCAAGACGTGGCGCAGAGTTTGCTGCAACTACTCTATTCTGTGGCGCACCATCGACATAGATTTCCGTCACAAAAAGGGCAAGTTGGACTCGGTACTGAAGATGTGCCGCCGCGCGGTTGATCGTAGCTCAGGTACTTTGGTTGTTCTTACTCTCCAGAACTTCCGCACCGGCACTGATAAGCTCCTCAAGTACATCACTAACAGATGGAACAAAAATATTGAAATTGATACTAAACGACTGGATGATGACTGTGCAAAGGCTTTAGCAGCTGGAATGATGCATGGTTTACAGCACCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGAAGATATTCTTAATCATAGTCGTCATCTGGAGTCACTTGATCTGAGCAATATTTCCATTTGGACATTGGATGGACGTCGTGACACCTTTAGAGAAGATTTGAAAAGAAAATTGACTGAACATGTTAAAAATGTAAGGCCTCCTCCTACTGATCTGTACTGTCGCTATAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

250

Amino Acids

28.62

Weight (kDa)

9.34

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014856)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015631 RchiOBHm_Chr5g0015681
rosa_laevigata	RLG00000032215 RLG00000032218
rosa_multiflora	Rmu_sc0000843.1_g000007 Rmu_sc0003230.1_g000004 Rmu_sc0003230.1_g000006
rosa_roxburghii	Rroxscaffold_1G00060840
rosa_rugosa	Rorug01G0078200 Rorug01G0078200 Rorug05G0029100
rosa_samantha	Rh5BG121000 Rh5BG121600 Rh5CG131400 Rh5CG131800 Rh5DG120000 Rh5DG120400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	652
AccII	CGCG	2 cut(s)	351, 353
AciI	CCGC	5 cut(s)	171, 346, 349, 353, 403
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	649
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	5 cut(s)	7, 333, 373, 431, 731
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	461, 676
AjiI	CACGTC	1 cut(s)	246
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	7 cut(s)	71, 87, 108, 190, 366, 421, 509
AluI	AGCT	7 cut(s)	71, 87, 108, 190, 366, 421, 509
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	156, 171, 738
AoxI	GGCC	2 cut(s)	172, 710
ApeKI	GCWGC	3 cut(s)	108, 261, 506
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	3 cut(s)	252, 285, 353
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	4, 115
AsuNHI	GCTAGC	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	95, 248, 518
BccI	CCATC	4 cut(s)	226, 296, 438, 638
BceAI	ACGGC	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	3 cut(s)	156, 171, 738
BfaI	CTAG	2 cut(s)	68, 72
BfmI	CTRYAG	1 cut(s)	739
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	6 cut(s)	109, 172, 262, 346, 349, 507
BlsI	GCNGC	6 cut(s)	110, 173, 263, 347, 350, 508
Bme1390I	CCNGG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	507, 556
BmtI	GCTAGC	1 cut(s)	71
BpmI	CTGGAG	2 cut(s)	377, 623
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	185, 483
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	487, 649
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	381, 608
BseNI	ACTGG	2 cut(s)	185, 483
BseRI	GAGGAG	2 cut(s)	413, 705
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	95, 248, 518
Bsh1236I	CGCG	2 cut(s)	351, 353
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	174, 712
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	39, 194, 408
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	156, 171, 738
BsnI	GGCC	2 cut(s)	174, 712
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	358, 613, 724
BspACI	CCGC	5 cut(s)	171, 346, 349, 353, 403
BspANI	GGCC	2 cut(s)	174, 712
BspCNI	CTCAG	2 cut(s)	380, 609
BspFNI	CGCG	2 cut(s)	351, 353
BspOI	GCTAGC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	185, 483
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	3 cut(s)	358, 613, 724
BssNI	GRCGYC	1 cut(s)	649
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	103, 491, 734
BstACI	GRCGYC	1 cut(s)	649
BstAPI	GCANNNNNTGC	2 cut(s)	258, 538
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	367, 617
BstF5I	GGATG	2 cut(s)	487, 649
BstFNI	CGCG	2 cut(s)	351, 353
BstHHI	GCGC	3 cut(s)	252, 285, 353
BstKTI	GATC	3 cut(s)	361, 616, 727
BstMAI	GTCTC	3 cut(s)	156, 171, 738
BstMBI	GATC	3 cut(s)	358, 613, 724
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 258, 506, 538
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	739
BstUI	CGCG	2 cut(s)	351, 353
BstV1I	GCAGC	3 cut(s)	95, 248, 518
BstZI	CGGCCG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	174, 712
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	487, 649
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	3 cut(s)	252, 285, 353
Cfr10I	RCCGGY	1 cut(s)	407
Csp6I	GTAC	5 cut(s)	6, 332, 372, 430, 730
CviAII	CATG	3 cut(s)	133, 521, 695
CviQI	GTAC	5 cut(s)	6, 332, 372, 430, 730
DdeI	CTNAG	2 cut(s)	367, 617
DpnI	GATC	3 cut(s)	360, 615, 726
DpnII	GATC	3 cut(s)	358, 613, 724
DraIII	CACNNNGTG	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	172
EagI	CGGCCG	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	136, 524, 698
FaiI	YATR	7 cut(s)	32, 134, 296, 522, 591, 696, 741
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	3 cut(s)	132, 520, 694
Fnu4HI	GCNGC	6 cut(s)	109, 172, 262, 346, 349, 507
FokI	GGATG	2 cut(s)	494, 656
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	6 cut(s)	109, 172, 262, 346, 349, 507
FspBI	CTAG	2 cut(s)	68, 72
GlaI	GCGC	3 cut(s)	251, 284, 352
GluI	GCNGC	6 cut(s)	109, 172, 262, 346, 349, 507
GsuI	CTGGAG	2 cut(s)	377, 623
HaeIII	GGCC	2 cut(s)	174, 712
HapII	CCGG	3 cut(s)	39, 194, 408
HhaI	GCGC	3 cut(s)	252, 285, 353
Hin1I	GRCGYC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	136, 524, 698
Hin6I	GCGC	3 cut(s)	250, 283, 351
HinP1I	GCGC	3 cut(s)	250, 283, 351
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	5 cut(s)	59, 120, 326, 550, 605
HpaII	CCGG	3 cut(s)	39, 194, 408
HphI	GGTGA	2 cut(s)	4, 115
Hpy166II	GTNNAC	2 cut(s)	52, 527
Hpy188I	TCNGA	2 cut(s)	231, 618
Hpy188III	TCNNGA	4 cut(s)	124, 394, 602, 653
Hpy8I	GTNNAC	2 cut(s)	52, 527
Hpy99I	CGWCG	2 cut(s)	203, 654
HpyCH4III	ACNGT	3 cut(s)	103, 491, 734
HpyCH4IV	ACGT	3 cut(s)	201, 245, 649
HpyCH4V	TGCA	5 cut(s)	158, 240, 264, 494, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 258, 506, 538
HpyF3I	CTNAG	2 cut(s)	367, 617
HpySE526I	ACGT	3 cut(s)	201, 245, 649
Hsp92I	GRCGYC	1 cut(s)	649
Hsp92II	CATG	3 cut(s)	136, 524, 698
HspAI	GCGC	3 cut(s)	250, 283, 351
Kzo9I	GATC	3 cut(s)	358, 613, 724
LmnI	GCTCC	2 cut(s)	195, 426
Lsp1109I	GCAGC	3 cut(s)	95, 248, 518
LweI	GCATC	2 cut(s)	507, 556
MaeI	CTAG	2 cut(s)	68, 72
MaeII	ACGT	3 cut(s)	201, 245, 649
MaeIII	GTNAC	6 cut(s)	34, 121, 202, 305, 606, 653
MalI	GATC	3 cut(s)	360, 615, 726
MboI	GATC	3 cut(s)	358, 613, 724
MboII	GAAGA	3 cut(s)	349, 587, 680
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	3 cut(s)	78, 462, 683
MlyI	GAGTC	3 cut(s)	129, 320, 614
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	35, 434, 545, 723, 726
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	81, 585, 699
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	39, 194, 408
MspR9I	CCNGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	351, 353
MwoI	GCNNNNNNNGC	4 cut(s)	93, 258, 506, 538
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	3 cut(s)	358, 613, 724
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	136, 524, 698
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	4 cut(s)	121, 305, 606, 653
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	1 cut(s)	698
OliI	CACNNNNGTG	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	712
PciI	ACATGT	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	59, 550
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	110, 173, 263, 347, 350, 508
PleI	GAGTC	3 cut(s)	128, 320, 613
PpsI	GAGTC	3 cut(s)	128, 320, 613
PscI	ACATGT	1 cut(s)	694
Psp124BI	GAGCTC	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	5 cut(s)	7, 333, 373, 431, 731
RsaNI	GTAC	5 cut(s)	6, 332, 372, 430, 730
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	81, 585, 699
SatI	GCNGC	6 cut(s)	109, 172, 262, 346, 349, 507
Sau3AI	GATC	3 cut(s)	358, 613, 724
SchI	GAGTC	3 cut(s)	129, 320, 614
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	507, 556
SfcI	CTRYAG	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	78, 462, 683
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	5 cut(s)	171, 346, 349, 353, 403
SspI	AATATT	2 cut(s)	457, 625
SspMI	CTAG	2 cut(s)	68, 72
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	103, 491, 734
TaiI	ACGT	3 cut(s)	204, 248, 652
TaqI	TCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	78, 462, 683
TatI	WGTACW	2 cut(s)	429, 729
TauI	GCSGC	3 cut(s)	174, 348, 351
TfiI	GAWTC	2 cut(s)	59, 550
Tru1I	TTAA	3 cut(s)	81, 585, 699
Tru9I	TTAA	3 cut(s)	81, 585, 699
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	4 cut(s)	121, 305, 606, 653
TseI	GCWGC	3 cut(s)	108, 261, 506
Tsp45I	GTSAC	4 cut(s)	121, 305, 606, 653
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	2 cut(s)	226, 293
TspRI	CASTG	1 cut(s)	418
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	68, 72
ZraI	GACGTC	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.