Rh5BG121000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014856
Physical Location & Seq
Reverse (-)
11454533 .. 11456524
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG121000.1

Sequence Viewer

Length: 648 bp
ATGGTCTGCAAGACGTGGCGCAGAGTTTGCTACAACTACTCTATTCTGTGGCGCACCATCGACATAGATTTCCGTCACAAAAAGGGCAAGTTGGACTCGGTACTGAAGATGTGCCGCCGCGCCGTTGATGGTAGCTCAGGTACTTTGGTTGTTCTTACTCCCCAGAACTTCCGCACCGGCACTGATAAGCTCCTCAAGTACATCACTAACAGTTGCAGAGGAATCAAAAGCCTAACTTTGGTGAATTGCGTGAAAATAACAGATGAGGGGTTTAGGGAAGTAGCTTCCAAACTTCCATTGTTGGAGGACCTTGGCATTTCACACGGCTCAGTCTCGCAAAAAACCGTGGAAGTAGTTGGGAAATCTTGCCCTCTTTTGAAATCATTGATATGGAACAAAAATATTGAAATTGATACTAAACGACTGGATGATGACTGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACAGCACCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGAAGATATTATTAATTATAGTCGTCATCTGGAGTCACTTGATCTGAGCAATATTTCCATTTGGACTTCGGATGGACGTCGTGACACCTTTAGAGAAGATTTGAAAAGAAAATTGACTGAACATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

215

Amino Acids

24.34

Weight (kDa)

9.06

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 598
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 115, 118, 172
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 595
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 3 cut(s) 102, 142, 200
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 3 cut(s) 379, 407, 622
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 4 cut(s) 135, 190, 284, 455
AluI AGCT 4 cut(s) 135, 190, 284, 455
Alw26I GTCTC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 452
AseI ATTAAT 1 cut(s) 531
AspLEI GCGC 3 cut(s) 21, 54, 122
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 132, 165
BauI CACGAG 1 cut(s) 482
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 65, 122, 584
BceAI ACGGC 2 cut(s) 107, 340
BcoDI GTCTC 1 cut(s) 337
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 3 cut(s) 115, 118, 453
BlsI GCNGC 3 cut(s) 116, 119, 454
Bme18I GGWCC 1 cut(s) 307
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 307
BmsI GCATC 2 cut(s) 453, 502
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 310, 345, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 310, 345, 516
BseGI GGATG 2 cut(s) 433, 595
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 150, 342, 554
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 3 cut(s) 115, 118, 172
BspCNI CTCAG 3 cut(s) 149, 341, 555
BspFNI CGCG 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 310, 345, 516
BssMI GATC 1 cut(s) 559
BssNI GRCGYC 1 cut(s) 595
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 310, 516
Bst2BI CACGAG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 212, 346, 437
BstACI GRCGYC 1 cut(s) 595
BstAPI GCANNNNNTGC 2 cut(s) 27, 484
BstDEI CTNAG 3 cut(s) 136, 328, 563
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 433, 595
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 3 cut(s) 21, 54, 122
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 3 cut(s) 27, 452, 484
BstNSI RCATGY 1 cut(s) 644
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 433, 595
BtsIMutI CAGTG 1 cut(s) 180
CfoI GCGC 3 cut(s) 21, 54, 122
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 3 cut(s) 101, 141, 199
CviAII CATG 2 cut(s) 467, 641
CviJI RGCY 7 cut(s) 135, 190, 231, 284, 327, 446, 455
CviKI_1 RGCY 7 cut(s) 135, 190, 231, 284, 327, 446, 455
CviQI GTAC 3 cut(s) 101, 141, 199
DdeI CTNAG 3 cut(s) 136, 328, 563
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
DraIII CACNNNGTG 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 310, 516
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 310, 516
EcoT22I ATGCAT 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 310, 516
FaeI CATG 2 cut(s) 470, 644
FaiI YATR 6 cut(s) 65, 391, 449, 468, 537, 642
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 2 cut(s) 466, 640
Fnu4HI GCNGC 3 cut(s) 115, 118, 453
FokI GGATG 2 cut(s) 440, 602
Fsp4HI GCNGC 3 cut(s) 115, 118, 453
GlaI GCGC 3 cut(s) 20, 53, 121
GluI GCNGC 3 cut(s) 115, 118, 453
GsuI CTGGAG 1 cut(s) 569
HapII CCGG 1 cut(s) 177
HhaI GCGC 3 cut(s) 21, 54, 122
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 2 cut(s) 470, 644
Hin6I GCGC 3 cut(s) 19, 52, 120
HinP1I GCGC 3 cut(s) 19, 52, 120
HinfI GANTC 4 cut(s) 95, 222, 496, 551
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 564, 589
Hpy188III TCNNGA 2 cut(s) 548, 599
Hpy8I GTNNAC 1 cut(s) 473
Hpy99I CGWCG 1 cut(s) 600
HpyCH4III ACNGT 3 cut(s) 212, 346, 437
HpyCH4IV ACGT 2 cut(s) 14, 595
HpyCH4V TGCA 4 cut(s) 9, 216, 440, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 452, 484
HpyF3I CTNAG 3 cut(s) 136, 328, 563
HpySE526I ACGT 2 cut(s) 14, 595
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 2 cut(s) 470, 644
HspAI GCGC 3 cut(s) 19, 52, 120
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 7 cut(s) 123, 176, 190, 410, 441, 477, 533
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 453, 502
MaeII ACGT 2 cut(s) 14, 595
MaeIII GTNAC 3 cut(s) 74, 552, 599
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 3 cut(s) 118, 533, 626
MluCI AATT 4 cut(s) 244, 408, 532, 629
MlyI GAGTC 2 cut(s) 89, 560
MmeI TCCRAC 2 cut(s) 72, 282
MnlI CCTC 6 cut(s) 203, 212, 259, 298, 381, 491
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 2 cut(s) 531, 646
MslI CAYNNNNRTG 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 27, 452, 484
NdeII GATC 1 cut(s) 559
NlaIII CATG 2 cut(s) 470, 644
NmuCI GTSAC 3 cut(s) 74, 552, 599
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 644
PciI ACATGT 1 cut(s) 640
PfeI GAWTC 2 cut(s) 222, 496
PkrI GCNGC 3 cut(s) 116, 119, 454
PleI GAGTC 2 cut(s) 89, 559
PpsI GAGTC 2 cut(s) 89, 559
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 1 cut(s) 640
PshBI ATTAAT 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 307
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 3 cut(s) 102, 142, 200
RsaNI GTAC 3 cut(s) 101, 141, 199
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 2 cut(s) 531, 646
SatI GCNGC 3 cut(s) 115, 118, 453
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 2 cut(s) 89, 560
SfaNI GCATC 2 cut(s) 453, 502
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 244, 408, 532, 629
SsiI CCGC 3 cut(s) 115, 118, 172
SspI AATATT 2 cut(s) 403, 571
StyI CCWWGG 2 cut(s) 310, 516
TaaI ACNGT 3 cut(s) 212, 346, 437
TaiI ACGT 2 cut(s) 17, 598
TaqI TCGA 1 cut(s) 60
TasI AATT 4 cut(s) 244, 408, 532, 629
TatI WGTACW 1 cut(s) 198
TauI GCSGC 2 cut(s) 117, 120
TfiI GAWTC 2 cut(s) 222, 496
Tru1I TTAA 2 cut(s) 531, 646
Tru9I TTAA 2 cut(s) 531, 646
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 74, 552, 599
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 3 cut(s) 74, 552, 599
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 307
VspI ATTAAT 1 cut(s) 531
XceI RCATGY 1 cut(s) 644
ZraI GACGTC 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.