Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014856

Physical Location & Seq

Genomic Coordinates Reverse (-)

11035101 .. 11036382

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAGAGTCTAAGAAGAGAAGAAAGGTAGAGTCAGAGTCTTCCTCTGCAACCGCCCAGGGCCGCCGAGACTGGACGGAGCTCCCGGACGACGTTACTGCTTGGATACTAGTACTGTCAAATCCGAAAGCAATTGATATCCTAAAAGAGTATCAGATGGTCTGCAAGACGTGGCGCAGAGTATGCTGCAACTACTCTATTCTGTGGCGCACCATCGACATAGATTTCCGTCACAAAAAGGGCAAGTTGGACTCGGTACTGAAGATGTGCCGCCGCGCAGTTGATCGTAGCTCAGGTACTTTGGTTGTTCTTACTCTCCAGAACTTTCGCACCGGCACTGATAAGCTCCTCAAGTACATCACTAACAGTTGCAGAGGAATCAAACGCCTAACTTTGGCGAATTGCGTGAAAATAACAGATGAGGGGTTGAGGGAAGTAGCTTCCAAACTTCCGTTGTTGGAGGACCTTGGCATTTCACACGGCTCAGTCTCGCAGAAAACCGTGGAAGTAATTGGGAAATCTTGCCCTCTTTTGAAATCATTGAGATGGAACAAAAATATTGAAATTGATACTAAACGACTGGATGATGACTGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACTGCACCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGATGATATTCTTAATTATAGTCGTCATCTGGAGTCACTTGATCTGAGCAATATTTCCATTTGGACATTGGACGGACGTCGTGACATCTTTAGAGAAGATTTGAAAAGAAAATTGACTGAACATGTTAAAAATGTAAGGCCTCCTCCTACTGATCTGTACTGTCGCTATAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

283

Amino Acids

32.36

Weight (kDa)

9.3

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014856)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015631 RchiOBHm_Chr5g0015681
rosa_laevigata	RLG00000032215 RLG00000032218
rosa_multiflora	Rmu_sc0000843.1_g000007 Rmu_sc0003230.1_g000004 Rmu_sc0003230.1_g000006
rosa_roxburghii	Rroxscaffold_1G00060840
rosa_rugosa	Rorug01G0078200 Rorug01G0078200 Rorug05G0029100
rosa_samantha	Rh5BG121000 Rh5BG121600 Rh5CG131400 Rh5CG131800 Rh5DG120000 Rh5DG120400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	754
AccII	CGCG	1 cut(s)	276
AciI	CCGC	4 cut(s)	54, 64, 271, 274
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	640
AfaI	GTAC	5 cut(s)	114, 258, 298, 356, 833
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	535, 563, 778
AhlI	ACTAGT	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	82, 291, 346, 440, 611
AluI	AGCT	5 cut(s)	82, 291, 346, 440, 611
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	3 cut(s)	63, 493, 840
AoxI	GGCC	2 cut(s)	61, 812
ApeKI	GCWGC	2 cut(s)	186, 608
AspLEI	GCGC	3 cut(s)	177, 210, 278
AspS9I	GGNCC	2 cut(s)	61, 463
AsuC2I	CCSGG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	173, 620
BccI	CCATC	3 cut(s)	151, 221, 540
BceAI	ACGGC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	3 cut(s)	63, 493, 840
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	2 cut(s)	603, 841
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	5 cut(s)	64, 187, 271, 274, 609
BlsI	GCNGC	5 cut(s)	65, 188, 272, 275, 610
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	59, 86
Bme18I	GGWCC	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	61, 463
BmrFI	CCNGG	2 cut(s)	59, 86
BmsI	GCATC	2 cut(s)	609, 658
BoxI	GACNNNNGTC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	2 cut(s)	302, 725
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	751
BsaJI	CCNNGG	5 cut(s)	57, 58, 466, 501, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	77, 585
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	57, 58, 466, 501, 672
BseGI	GGATG	2 cut(s)	589, 682
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	3 cut(s)	306, 498, 710
BseNI	ACTGG	2 cut(s)	77, 585
BseRI	GAGGAG	2 cut(s)	338, 807
BseXI	GCAGC	2 cut(s)	173, 620
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	63, 814
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	86, 333
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	3 cut(s)	63, 493, 840
BsnI	GGCC	2 cut(s)	63, 814
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	283, 715, 826
BspACI	CCGC	4 cut(s)	54, 64, 271, 274
BspANI	GGCC	2 cut(s)	63, 814
BspCNI	CTCAG	3 cut(s)	305, 497, 711
BspFNI	CGCG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	77, 585
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	5 cut(s)	57, 58, 466, 501, 672
BssMI	GATC	3 cut(s)	283, 715, 826
BssNI	GRCGYC	1 cut(s)	751
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	2 cut(s)	466, 672
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	5 cut(s)	117, 368, 502, 593, 836
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	751
BstAPI	GCANNNNNTGC	2 cut(s)	183, 640
BstDEI	CTNAG	4 cut(s)	12, 292, 484, 719
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	589, 682
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	3 cut(s)	177, 210, 278
BstKTI	GATC	3 cut(s)	286, 718, 829
BstMAI	GTCTC	3 cut(s)	63, 493, 840
BstMBI	GATC	3 cut(s)	283, 715, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 608, 640
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	800
BstPAI	GACNNNNGTC	1 cut(s)	750
BstSCI	CCNGG	2 cut(s)	57, 84
BstSFI	CTRYAG	2 cut(s)	603, 841
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	173, 620
BstV2I	GAAGAC	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	63, 814
BtgI	CCRYGG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	589, 682
BtsIMutI	CAGTG	1 cut(s)	336
CfoI	GCGC	3 cut(s)	177, 210, 278
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	61, 463
Csp6I	GTAC	5 cut(s)	113, 257, 297, 355, 832
CviAII	CATG	2 cut(s)	623, 797
CviJI	RGCY	9 cut(s)	63, 82, 291, 346, 440, 483, 602, 611, 814
CviKI_1	RGCY	9 cut(s)	63, 82, 291, 346, 440, 483, 602, 611, 814
CviQI	GTAC	5 cut(s)	113, 257, 297, 355, 832
DdeI	CTNAG	4 cut(s)	12, 292, 484, 719
DpnI	GATC	3 cut(s)	285, 717, 828
DpnII	GATC	3 cut(s)	283, 715, 826
DraIII	CACNNNGTG	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	466, 672
Eco147I	AGGCCT	1 cut(s)	814
Eco24I	GRGCYC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	466, 672
EcoT22I	ATGCAT	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	466, 672
FaeI	CATG	2 cut(s)	626, 800
FaiI	YATR	7 cut(s)	184, 221, 605, 624, 693, 798, 843
FatI	CATG	2 cut(s)	622, 796
Fnu4HI	GCNGC	5 cut(s)	64, 187, 271, 274, 609
FokI	GGATG	2 cut(s)	596, 689
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	5 cut(s)	64, 187, 271, 274, 609
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	3 cut(s)	176, 209, 277
GluI	GCNGC	5 cut(s)	64, 187, 271, 274, 609
GsuI	CTGGAG	2 cut(s)	302, 725
HaeIII	GGCC	2 cut(s)	63, 814
HapII	CCGG	2 cut(s)	86, 333
HhaI	GCGC	3 cut(s)	177, 210, 278
Hin1I	GRCGYC	1 cut(s)	751
Hin1II	CATG	2 cut(s)	626, 800
Hin6I	GCGC	3 cut(s)	175, 208, 276
HinP1I	GCGC	3 cut(s)	175, 208, 276
HinfI	GANTC	7 cut(s)	8, 32, 38, 251, 378, 652, 707
HpaII	CCGG	2 cut(s)	86, 333
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	4 cut(s)	37, 126, 156, 720
Hpy188III	TCNNGA	3 cut(s)	319, 704, 755
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	2 cut(s)	95, 756
HpyCH4III	ACNGT	5 cut(s)	117, 368, 502, 593, 836
HpyCH4IV	ACGT	3 cut(s)	93, 170, 751
HpyCH4V	TGCA	7 cut(s)	50, 165, 189, 372, 596, 622, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 608, 640
HpyF3I	CTNAG	4 cut(s)	12, 292, 484, 719
HpySE526I	ACGT	3 cut(s)	93, 170, 751
Hsp92I	GRCGYC	1 cut(s)	751
Hsp92II	CATG	2 cut(s)	626, 800
HspAI	GCGC	3 cut(s)	175, 208, 276
Kzo9I	GATC	3 cut(s)	283, 715, 826
LmnI	GCTCC	3 cut(s)	79, 87, 351
Lsp1109I	GCAGC	2 cut(s)	173, 620
LweI	GCATC	2 cut(s)	609, 658
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	3 cut(s)	93, 170, 751
MaeIII	GTNAC	4 cut(s)	94, 230, 708, 755
MalI	GATC	3 cut(s)	285, 717, 828
MboI	GATC	3 cut(s)	283, 715, 826
MboII	GAAGA	5 cut(s)	28, 33, 33, 274, 782
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	132, 400, 510, 564, 688, 785
MlyI	GAGTC	5 cut(s)	17, 41, 47, 245, 716
MmeI	TCCRAC	2 cut(s)	228, 438
Mph1103I	ATGCAT	1 cut(s)	624
MseI	TTAA	2 cut(s)	687, 801
MslI	CAYNNNNRTG	1 cut(s)	544
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	2 cut(s)	86, 333
MspR9I	CCNGG	2 cut(s)	59, 86
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	183, 608, 640
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	283, 715, 826
NlaIII	CATG	2 cut(s)	626, 800
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	3 cut(s)	230, 708, 755
NsiI	ATGCAT	1 cut(s)	624
NspI	RCATGY	1 cut(s)	800
PasI	CCCWGGG	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	814
PciI	ACATGT	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	378, 652
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	65, 188, 272, 275, 610
PleI	GAGTC	5 cut(s)	16, 40, 46, 245, 715
PpsI	GAGTC	5 cut(s)	16, 40, 46, 245, 715
PpuMI	RGGWCCY	1 cut(s)	463
PscI	ACATGT	1 cut(s)	796
PshAI	GACNNNNGTC	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	61, 463
PspPPI	RGGWCCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	5 cut(s)	114, 258, 298, 356, 833
RsaNI	GTAC	5 cut(s)	113, 257, 297, 355, 832
RseI	CAYNNNNRTG	1 cut(s)	544
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	687, 801
SatI	GCNGC	5 cut(s)	64, 187, 271, 274, 609
Sau3AI	GATC	3 cut(s)	283, 715, 826
Sau96I	GGNCC	2 cut(s)	61, 463
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	5 cut(s)	17, 41, 47, 245, 716
ScrFI	CCNGG	2 cut(s)	59, 86
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	609, 658
SfcI	CTRYAG	2 cut(s)	603, 841
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	6 cut(s)	132, 400, 510, 564, 688, 785
SseBI	AGGCCT	1 cut(s)	814
SsiI	CCGC	4 cut(s)	54, 64, 271, 274
SspI	AATATT	2 cut(s)	559, 727
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	814
StyD4I	CCNGG	2 cut(s)	57, 84
StyI	CCWWGG	2 cut(s)	466, 672
TaaI	ACNGT	5 cut(s)	117, 368, 502, 593, 836
TaiI	ACGT	3 cut(s)	96, 173, 754
TaqI	TCGA	1 cut(s)	216
TasI	AATT	6 cut(s)	132, 400, 510, 564, 688, 785
TatI	WGTACW	3 cut(s)	112, 354, 831
TauI	GCSGC	3 cut(s)	66, 273, 276
TfiI	GAWTC	2 cut(s)	378, 652
Tru1I	TTAA	2 cut(s)	687, 801
Tru9I	TTAA	2 cut(s)	687, 801
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	3 cut(s)	230, 708, 755
TseI	GCWGC	2 cut(s)	186, 608
Tsp45I	GTSAC	3 cut(s)	230, 708, 755
TspDTI	ATGAA	1 cut(s)	644
TspGWI	ACGGA	4 cut(s)	92, 218, 441, 762
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	463
XceI	RCATGY	1 cut(s)	800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XspI	CTAG	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	752
ZrmI	AGTACT	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.