Rmu_sc0003230.1_g000006

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003230.1
OG0014856
Physical Location & Seq
Reverse (-)
35585 .. 36732
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003230.1_g000006.1.cds

Sequence Viewer

Length: 585 bp
atgggagagtctaagaagagaagaaaggtagagtcagagtcttcctctgcaaccgcccagggccgccgagactggacggagctcccggacgacgttacggcgtggatactaggcaagttggactcggtactgaagatgtgccaccgcgccgttgatcgtagctcaggtactttggttgttcttactctccagaacttccgcaccggcactgataagctcctcaagtacatcactaacagaggaatcaaacgcctaactttggcgaattgcgtgaaaataacagatgaggggttgagggaagtagcttccaaacttccgttgttggaggaccttggcatttcacacggctcagtctcgcaaaaaactgtggaagtaattgggaaatcttgccctcttttgaaatcattgagatggaacaaaaatattgaaattgatactaaacgactggatgatgaccgtgcaaaggctatagcagctggaatgatgcatggtttacagcatctcgtgctttcagggattcatctttctaacgatgccttggaagatattattaattatagttgtcattggagtcacttgatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

194

Amino Acids

21.63

Weight (kDa)

9.06

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 4 cut(s) 54, 64, 145, 199
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 3 cut(s) 129, 169, 227
AfiI CCNNNNNNNGG 2 cut(s) 259, 463
AgsI TTSAA 2 cut(s) 400, 428
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 82, 162, 217, 305, 476
AluI AGCT 5 cut(s) 82, 162, 217, 305, 476
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 63, 358
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 473
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 61, 328
AsuC2I CCSGG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BanII GRGCYC 1 cut(s) 84
BauI CACGAG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 485
BccI CCATC 1 cut(s) 405
BceAI ACGGC 3 cut(s) 114, 134, 361
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 63, 358
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 468
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 2 cut(s) 64, 474
BlsI GCNGC 2 cut(s) 65, 475
Bme1390I CCNGG 2 cut(s) 59, 86
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 61, 328
BmrFI CCNGG 2 cut(s) 59, 86
BmsI GCATC 3 cut(s) 474, 508, 523
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 57, 58, 331, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 463
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 77, 450
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 4 cut(s) 57, 58, 331, 537
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 259, 463
BseMII CTCAG 2 cut(s) 177, 363
BseNI ACTGG 2 cut(s) 77, 450
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 86, 204
BslI CCNNNNNNNGG 2 cut(s) 259, 463
BsmAI GTCTC 2 cut(s) 63, 358
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 154, 579
BspACI CCGC 4 cut(s) 54, 64, 145, 199
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 176, 362
BspFNI CGCG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 77, 450
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 57, 58, 331, 537
BssMI GATC 2 cut(s) 154, 579
BssSI CACGAG 1 cut(s) 503
BssT1I CCWWGG 2 cut(s) 331, 537
Bst2BI CACGAG 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 367, 458
Bst6I CTCTTC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 12, 163, 349
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 157, 582
BstMAI GTCTC 2 cut(s) 63, 358
BstMBI GATC 2 cut(s) 154, 579
BstMWI GCNNNNNNNGC 2 cut(s) 473, 505
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 84
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 485
BstV2I GAAGAC 1 cut(s) 33
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 61, 328
Csp6I GTAC 3 cut(s) 128, 168, 226
CviAII CATG 1 cut(s) 488
CviJI RGCY 8 cut(s) 63, 82, 162, 217, 305, 348, 467, 476
CviKI_1 RGCY 8 cut(s) 63, 82, 162, 217, 305, 348, 467, 476
CviQI GTAC 3 cut(s) 128, 168, 226
DdeI CTNAG 3 cut(s) 12, 163, 349
DpnI GATC 2 cut(s) 156, 581
DpnII GATC 2 cut(s) 154, 579
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 331, 537
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 331, 537
EcoT22I ATGCAT 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 331, 537
FaeI CATG 1 cut(s) 491
FaiI YATR 3 cut(s) 470, 489, 558
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 64, 474
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 64, 474
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 64, 474
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 63
HapII CCGG 2 cut(s) 86, 204
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 491
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 7 cut(s) 8, 32, 38, 122, 243, 517, 571
HpaII CCGG 2 cut(s) 86, 204
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 37, 584
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 367, 458
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 50, 461, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 505
HpyF3I CTNAG 3 cut(s) 12, 163, 349
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 491
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 154, 579
LmnI GCTCC 3 cut(s) 79, 87, 222
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 3 cut(s) 474, 508, 523
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 94, 572
MalI GATC 2 cut(s) 156, 581
MboI GATC 2 cut(s) 154, 579
MboII GAAGA 5 cut(s) 28, 33, 33, 145, 554
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 265, 375, 429, 553
MlyI GAGTC 5 cut(s) 17, 41, 47, 116, 580
MmeI TCCRAC 2 cut(s) 99, 303
MnlI CCTC 7 cut(s) 55, 230, 233, 280, 288, 319, 402
Mph1103I ATGCAT 1 cut(s) 489
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 86, 204
MspR9I CCNGG 2 cut(s) 59, 86
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 473, 505
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 154, 579
NlaIII CATG 1 cut(s) 491
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 489
PasI CCCWGGG 1 cut(s) 58
PfeI GAWTC 2 cut(s) 243, 517
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 2 cut(s) 65, 475
PleI GAGTC 5 cut(s) 16, 40, 46, 116, 579
PpsI GAGTC 5 cut(s) 16, 40, 46, 116, 579
PpuMI RGGWCCY 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspPI GGNCC 2 cut(s) 61, 328
PspPPI RGGWCCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 129, 169, 227
RsaNI GTAC 3 cut(s) 128, 168, 226
RseI CAYNNNNRTG 1 cut(s) 409
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 2 cut(s) 64, 474
Sau3AI GATC 2 cut(s) 154, 579
Sau96I GGNCC 2 cut(s) 61, 328
SchI GAGTC 5 cut(s) 17, 41, 47, 116, 580
ScrFI CCNGG 2 cut(s) 59, 86
SduI GDGCHC 1 cut(s) 84
SetI ASST 9 cut(s) 30, 84, 96, 164, 169, 219, 307, 333, 478
SfaNI GCATC 3 cut(s) 474, 508, 523
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 265, 375, 429, 553
SsiI CCGC 4 cut(s) 54, 64, 145, 199
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 57, 84
StyI CCWWGG 2 cut(s) 331, 537
TaaI ACNGT 2 cut(s) 367, 458
TaiI ACGT 1 cut(s) 96
TasI AATT 4 cut(s) 265, 375, 429, 553
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 243, 517
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 2 cut(s) 92, 306
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 328
VspI ATTAAT 1 cut(s) 552
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.