RLG00000032218

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014856
Physical Location & Seq
Reverse (-)
12188595 .. 12189748
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032218

Sequence Viewer

Length: 519 bp
ATGGTCTGCAAGACGTGGAACAGAGTTTGCTGCAACTACTCTATTCTGTGGCGCACCATTGACATAGATTTCCGTCACAAAAAGGGCAAGTTGGACTCCGTACTGAAGATGTGCCGCCGCGCCGTTGATCGTAGCTCAGGTACTTTGGTTGTTCTTACTCTCCAGAACTTCCGCACCCGCACTGATGAGCTCCTCAAGTACATCACTAACAGATGGAACAAAAAGATTGAAATTGATACTAAACGACTGGATGATGACTGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACAGCACCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGACGATATTCTTAATTATAGTCGTCATCTGGAGTCACTTGATCTCAGCAATATTTCCATTTGGACATTGGATGGACGTCGTGACACCATTAGAGAAGATTTGAAAAGAAAATTGACAGAACATGTTAAAAATGTAAGGCCTCCTCCTACTGATCTGTACTGTCGCTATAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

173

Amino Acids

20.2

Weight (kDa)

9.3

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 421
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 115, 118, 172, 178
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 418
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 4 cut(s) 102, 142, 200, 500
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 2 cut(s) 230, 445
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 3 cut(s) 135, 190, 278
AluI AGCT 3 cut(s) 135, 190, 278
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 507
AoxI GGCC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 30, 275
AspLEI GCGC 2 cut(s) 54, 122
BaeI ACNNNNGTAYC 2 cut(s) 132, 165
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 17, 287
BccI CCATC 2 cut(s) 207, 407
BceAI ACGGC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 507
BfmI CTRYAG 2 cut(s) 270, 508
BisI GCNGC 4 cut(s) 31, 115, 118, 276
BlsI GCNGC 4 cut(s) 32, 116, 119, 277
BmgBI CACGTC 1 cut(s) 15
BmsI GCATC 2 cut(s) 276, 325
BpmI CTGGAG 2 cut(s) 146, 392
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 256, 418
BseMII CTCAG 2 cut(s) 150, 400
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 182, 474
BseXI GCAGC 2 cut(s) 17, 287
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 507
BsnI GGCC 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 127, 382, 493
BspACI CCGC 4 cut(s) 115, 118, 172, 178
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 149, 399
BspFNI CGCG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 127, 382, 493
BssNI GRCGYC 1 cut(s) 418
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 260, 503
BstACI GRCGYC 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 136, 386
BstF5I GGATG 2 cut(s) 256, 418
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 2 cut(s) 54, 122
BstKTI GATC 3 cut(s) 130, 385, 496
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 127, 382, 493
BstMWI GCNNNNNNNGC 2 cut(s) 275, 307
BstNSI RCATGY 1 cut(s) 467
BstSFI CTRYAG 2 cut(s) 270, 508
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 17, 287
BsuRI GGCC 1 cut(s) 481
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 256, 418
BtsIMutI CAGTG 1 cut(s) 180
CfoI GCGC 2 cut(s) 54, 122
Csp6I GTAC 4 cut(s) 101, 141, 199, 499
CviAII CATG 2 cut(s) 290, 464
CviJI RGCY 5 cut(s) 135, 190, 269, 278, 481
CviKI_1 RGCY 5 cut(s) 135, 190, 269, 278, 481
CviQI GTAC 4 cut(s) 101, 141, 199, 499
DdeI CTNAG 2 cut(s) 136, 386
DpnI GATC 3 cut(s) 129, 384, 495
DpnII GATC 3 cut(s) 127, 382, 493
DraIII CACNNNGTG 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 293, 467
FaiI YATR 6 cut(s) 65, 272, 291, 360, 465, 510
FatI CATG 2 cut(s) 289, 463
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 4 cut(s) 31, 115, 118, 276
FokI GGATG 2 cut(s) 263, 425
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 31, 115, 118, 276
GlaI GCGC 2 cut(s) 53, 121
GluI GCNGC 4 cut(s) 31, 115, 118, 276
GsuI CTGGAG 2 cut(s) 146, 392
HaeIII GGCC 1 cut(s) 481
HhaI GCGC 2 cut(s) 54, 122
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 2 cut(s) 293, 467
Hin6I GCGC 2 cut(s) 52, 120
HinP1I GCGC 2 cut(s) 52, 120
HinfI GANTC 3 cut(s) 95, 319, 374
Hpy166II GTNNAC 1 cut(s) 296
Hpy188III TCNNGA 3 cut(s) 163, 371, 422
Hpy8I GTNNAC 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 423
HpyCH4III ACNGT 2 cut(s) 260, 503
HpyCH4IV ACGT 2 cut(s) 14, 418
HpyCH4V TGCA 4 cut(s) 9, 33, 263, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 307
HpyF3I CTNAG 2 cut(s) 136, 386
HpySE526I ACGT 2 cut(s) 14, 418
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 2 cut(s) 293, 467
HspAI GCGC 2 cut(s) 52, 120
Kzo9I GATC 3 cut(s) 127, 382, 493
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 123, 176, 233, 264, 300, 356
Lsp1109I GCAGC 2 cut(s) 17, 287
LweI GCATC 2 cut(s) 276, 325
MaeII ACGT 2 cut(s) 14, 418
MaeIII GTNAC 3 cut(s) 74, 375, 422
MalI GATC 3 cut(s) 129, 384, 495
MboI GATC 3 cut(s) 127, 382, 493
MboII GAAGA 2 cut(s) 118, 449
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 231, 355, 452
MlyI GAGTC 2 cut(s) 89, 383
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 203, 314, 492, 495
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 2 cut(s) 354, 468
MspA1I CMGCKG 1 cut(s) 278
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 275, 307
NdeII GATC 3 cut(s) 127, 382, 493
NlaIII CATG 2 cut(s) 293, 467
NmuCI GTSAC 3 cut(s) 74, 375, 422
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 467
PceI AGGCCT 1 cut(s) 481
PciI ACATGT 1 cut(s) 463
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 32, 116, 119, 277
PleI GAGTC 2 cut(s) 89, 382
PpsI GAGTC 2 cut(s) 89, 382
PscI ACATGT 1 cut(s) 463
Psp124BI GAGCTC 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 4 cut(s) 102, 142, 200, 500
RsaNI GTAC 4 cut(s) 101, 141, 199, 499
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 354, 468
SatI GCNGC 4 cut(s) 31, 115, 118, 276
Sau3AI GATC 3 cut(s) 127, 382, 493
SchI GAGTC 2 cut(s) 89, 383
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 17, 137, 142, 192, 280, 306, 421
SfaNI GCATC 2 cut(s) 276, 325
SfcI CTRYAG 2 cut(s) 270, 508
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 231, 355, 452
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 4 cut(s) 115, 118, 172, 178
SspI AATATT 1 cut(s) 394
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 481
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 260, 503
TaiI ACGT 2 cut(s) 17, 421
TasI AATT 3 cut(s) 231, 355, 452
TatI WGTACW 2 cut(s) 198, 498
TauI GCSGC 2 cut(s) 117, 120
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 354, 468
Tru9I TTAA 2 cut(s) 354, 468
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 74, 375, 422
TseI GCWGC 2 cut(s) 30, 275
Tsp45I GTSAC 3 cut(s) 74, 375, 422
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 2 cut(s) 62, 88
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
ZraI GACGTC 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.