Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Forward (+)

10914494 .. 10915407

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAAGATCCTCATATAAAACCACCCAACACTGTCGGAAGCGACGTTTCTCGGACACCCAAGAATACTGCGGAGAGCAAAAGCGAGCCTGCCGAAACTGGTTGGATCTCCCGGAGGACCTAACGGCGTCAATATTTTCAAGGTTGAAAGCCACAGAGATCTTGCATGATTGTCAGCTTGTGTGCAAGAGATGGTTGCAAATCTGCAAGGTTAACCCTCTGGTATGGCGAACCATCGACATGGATCATCACCTTTTGGATGATTTCATCTACGGCAGCATGGAGCATATGTGCCGCGACCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTCCATAACTGATAGTAGTTCATGTGGAATCAGACGCCTACGATTGGAAGATTGTCCCGCGATAACAGATGAGGGATTGTGTGGAGTGGCCTCGAAATTTGCTCGGTTAAAAGAGCTTGACATTTCAGAATGCTTTCTCTCTTATAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAAACTGAAACGTCGATTCAACGAGAGGGGGAGCAACTCTATGTACGGATACACTATAGCACGAAACATGCGCGGTTTACACAGCCTTTCGCTTTCCAAATTTAACCTAACTAATGATGAATTGCGAAAAATCCTCGAGTCCTGTCTTGGTCTTGAAACACTTGATTTGGGTGAGAGTTTTCTTCCATATCTAGAGGAAGATTTGGGAAGAAGATGTGCTGAACAAATTAGAAAAAAATTGGAGCTTCCCTATAGGCTAAACTACGACATCGAGAAGTATTTATCACAAGTAACGAATAACAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

290

Amino Acids

33.65

Weight (kDa)

8.57

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	2.1e-10	F-box-like
F-box	PF00646	34 - 73	1.8e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	3 cut(s)	297, 431, 636
AciI	CCGC	4 cut(s)	72, 295, 429, 636
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	3 cut(s)	3, 114, 252
AcsI	RAATTY	2 cut(s)	467, 662
AcyI	GRCGYC	2 cut(s)	128, 406
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	141, 148, 565, 583, 719
AluBI	AGCT	4 cut(s)	178, 315, 487, 808
AluI	AGCT	4 cut(s)	178, 315, 487, 808
AlwI	GGATC	3 cut(s)	3, 114, 252
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	467, 662
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	348, 636
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	242, 746
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	2 cut(s)	186, 242
BceAI	ACGGC	2 cut(s)	141, 289
BciVI	GTATCC	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	2 cut(s)	524, 755
BfmI	CTRYAG	2 cut(s)	618, 814
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	605
BglII	AGATCT	2 cut(s)	159, 539
BisI	GCNGC	2 cut(s)	277, 295
BlsI	GCNGC	2 cut(s)	278, 296
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	128, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	288
Bsh1236I	CGCG	3 cut(s)	297, 431, 636
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	698
Bsp143I	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
BspACI	CCGC	4 cut(s)	72, 295, 429, 636
BspANI	GGCC	1 cut(s)	461
BspFNI	CGCG	3 cut(s)	297, 431, 636
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	3 cut(s)	3, 114, 252
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
BssNI	GRCGYC	2 cut(s)	128, 406
Bst4CI	ACNGT	1 cut(s)	35
BstACI	GRCGYC	2 cut(s)	128, 406
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	87, 91
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	3 cut(s)	297, 431, 636
BstHHI	GCGC	2 cut(s)	348, 636
BstKTI	GATC	6 cut(s)	11, 109, 162, 247, 310, 542
BstMBI	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	618, 814
BstUI	CGCG	3 cut(s)	297, 431, 636
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	4 cut(s)	8, 106, 159, 539
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	4 cut(s)	8, 106, 159, 539
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	87, 91
CfoI	GCGC	2 cut(s)	348, 636
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	2 cut(s)	117, 414
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	5 cut(s)	167, 241, 280, 393, 631
CviQI	GTAC	1 cut(s)	607
DpnI	GATC	6 cut(s)	10, 108, 161, 246, 309, 541
DpnII	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	334
FaeI	CATG	5 cut(s)	170, 244, 283, 396, 634
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	5 cut(s)	166, 240, 279, 392, 630
FauI	CCCGC	1 cut(s)	436
FauNDI	CATATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	277, 295
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	277, 295
FspBI	CTAG	2 cut(s)	524, 755
GlaI	GCGC	2 cut(s)	347, 635
GluI	GCNGC	2 cut(s)	277, 295
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	117, 414
HhaI	GCGC	2 cut(s)	348, 636
Hin1I	GRCGYC	2 cut(s)	128, 406
Hin1II	CATG	5 cut(s)	170, 244, 283, 396, 634
Hin6I	GCGC	2 cut(s)	346, 634
HinP1I	GCGC	2 cut(s)	346, 634
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	399, 579, 701
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	242, 746
Hpy166II	GTNNAC	2 cut(s)	214, 641
Hpy188I	TCNGA	4 cut(s)	39, 55, 404, 499
Hpy188III	TCNNGA	4 cut(s)	524, 716, 755, 835
Hpy8I	GTNNAC	2 cut(s)	214, 641
Hpy99I	CGWCG	2 cut(s)	48, 579
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	3 cut(s)	46, 339, 574
HpyCH4V	TGCA	4 cut(s)	166, 186, 199, 207
HpySE526I	ACGT	3 cut(s)	46, 339, 574
Hsp92I	GRCGYC	2 cut(s)	128, 406
Hsp92II	CATG	5 cut(s)	170, 244, 283, 396, 634
HspAI	GCGC	2 cut(s)	346, 634
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
LmnI	GCTCC	3 cut(s)	283, 594, 805
LpnPI	CCDG	6 cut(s)	85, 103, 126, 206, 346, 718
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	524, 755
MaeII	ACGT	3 cut(s)	46, 339, 574
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	6 cut(s)	10, 108, 161, 246, 309, 541
MboI	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
MboII	GAAGA	7 cut(s)	18, 431, 549, 737, 773, 783, 786
MflI	RGATCY	4 cut(s)	8, 106, 159, 539
MluCI	AATT	5 cut(s)	467, 662, 683, 789, 800
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	2 cut(s)	17, 84
MnlI	CCTC	9 cut(s)	22, 109, 228, 311, 436, 472, 582, 707, 751
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	4 cut(s)	213, 369, 479, 666
MslI	CAYNNNNRTG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	506
MvnI	CGCG	3 cut(s)	297, 431, 636
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
NlaIII	CATG	5 cut(s)	170, 244, 283, 396, 634
NlaIV	GGNNCC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 336
PctI	GAATGC	1 cut(s)	506
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	399, 579
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	278, 296
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	698
PsuI	RGATCY	4 cut(s)	8, 106, 159, 539
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	213, 369, 479, 666
SatI	GCNGC	2 cut(s)	277, 295
Sau3AI	GATC	6 cut(s)	8, 106, 159, 244, 307, 539
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	113
SfcI	CTRYAG	2 cut(s)	618, 814
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	368, 698
SmoI	CTYRAG	2 cut(s)	368, 698
Sse9I	AATT	5 cut(s)	467, 662, 683, 789, 800
SsiI	CCGC	4 cut(s)	72, 295, 429, 636
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	2 cut(s)	524, 755
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	3 cut(s)	49, 342, 577
TaqI	TCGA	6 cut(s)	237, 330, 464, 577, 699, 834
TasI	AATT	5 cut(s)	467, 662, 683, 789, 800
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	399, 579
Tru1I	TTAA	4 cut(s)	213, 369, 479, 666
Tru9I	TTAA	4 cut(s)	213, 369, 479, 666
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	256, 381, 696
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	467, 662
XbaI	TCTAGA	2 cut(s)	523, 754
XceI	RCATGY	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	2 cut(s)	524, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.