Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Reverse (-)

12030843 .. 12031799

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAAGAACCTCATATGAAACCACCCAACACTGCCCGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGCGCCTCCGATTGGAATGTTGCCCCAAGATAACAAATGAGGGACTGTGTGGAGTGGCCTCGAAATTTGCGCGGTTAAAAGAGCTTGACATTTCAGTGTACTTTCTCTCGTGTAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAACCTGAACCATCGATTCCGTGGGGCTAGCAACTCTATGTACGGAGACACTATAGCACGAACCATGCGCGGTTTACACAACCTTTCGCTTTCTGGATTTGTGCTGACTAATGATGAATTGAGGAAAATCCTCCAGTCCTGTCTTGGTCTTGAGACACTTGATTTGGGTGAGTGTTTTGCTCCAAATCTAGAGGAAGATTTGAGAAGAAGATGTGTGGAACAAATTAGAAAAAAATTGCGGCTTCCCTACAACTTTGCTTATTATGACTTTCGTACAAGGACGAAAAATTTCCATCACATGCATAGAGTAACAACAGTTGAACGAAAACAAACCATGCGGACCATGCGTTTGGAGAGATATTTACGTAGGGCAAACGTACCACGTGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

307

Amino Acids

35.94

Weight (kDa)

9.44

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	4.9e-10	F-box-like
F-box	PF00646	34 - 73	2.2e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	3 cut(s)	297, 442, 600
AciI	CCGC	5 cut(s)	295, 442, 600, 769, 868
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	2 cut(s)	114, 267
AcsI	RAATTY	2 cut(s)	434, 817
AcvI	CACGTG	1 cut(s)	914
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	4 cut(s)	470, 572, 805, 909
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	141, 148, 199, 532, 851
AluBI	AGCT	5 cut(s)	85, 152, 178, 315, 454
AluI	AGCT	5 cut(s)	85, 152, 178, 315, 454
Alw26I	GTCTC	2 cut(s)	570, 677
AlwI	GGATC	2 cut(s)	114, 267
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	434, 817
ArsI	GACNNNNNNTTYG	4 cut(s)	676, 708, 862, 894
Asp700I	GAANNNNTTC	1 cut(s)	818
AspLEI	GCGC	4 cut(s)	348, 375, 442, 600
AspS9I	GGNCC	1 cut(s)	870
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	710
AsuNHI	GCTAGC	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	478
BbrPI	CACGTG	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	4 cut(s)	186, 242, 549, 831
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	570, 677
BfaI	CTAG	4 cut(s)	86, 491, 558, 719
BfmI	CTRYAG	3 cut(s)	70, 153, 582
BfoI	RGCGCY	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	2 cut(s)	159, 506
BisI	GCNGC	3 cut(s)	91, 295, 770
BlsI	GCNGC	3 cut(s)	92, 296, 771
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	870
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	870
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	544
BsaAI	YACGTR	2 cut(s)	896, 914
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	104, 664
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	104, 664
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	297, 442, 600
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	570, 677
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
BspACI	CCGC	5 cut(s)	295, 442, 600, 769, 868
BspANI	GGCC	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	544
BspFNI	CGCG	3 cut(s)	297, 442, 600
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	114, 267
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	104, 664
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	417, 847
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	368
BstBAI	YACGTR	2 cut(s)	896, 914
BstC8I	GCNNGC	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	550
BstFNI	CGCG	3 cut(s)	297, 442, 600
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	4 cut(s)	348, 375, 442, 600
BstKTI	GATC	6 cut(s)	109, 162, 262, 301, 310, 509
BstMAI	GTCTC	2 cut(s)	570, 677
BstMBI	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 874
BstNSI	RCATGY	2 cut(s)	244, 832
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	70, 153, 582
BstSNI	TACGTA	1 cut(s)	896
BstUI	CGCG	3 cut(s)	297, 442, 600
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	3 cut(s)	106, 159, 506
BstXI	CCANNNNNNTGG	2 cut(s)	880, 918
BstYI	RGATCY	3 cut(s)	106, 159, 506
Bsu15I	ATCGAT	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 471
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	4 cut(s)	348, 375, 442, 600
Cfr13I	GGNCC	1 cut(s)	870
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	4 cut(s)	469, 571, 804, 908
CviAII	CATG	6 cut(s)	241, 280, 595, 829, 865, 874
CviQI	GTAC	4 cut(s)	469, 571, 804, 908
DpnI	GATC	6 cut(s)	108, 161, 261, 300, 309, 508
DpnII	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
Eco105I	TACGTA	1 cut(s)	896
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	870
Eco72I	CACGTG	1 cut(s)	914
Eco88I	CYCGRG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	246, 834
FaeI	CATG	6 cut(s)	244, 283, 598, 832, 868, 877
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	6 cut(s)	240, 279, 594, 828, 864, 873
FauNDI	CATATG	2 cut(s)	16, 288
Fnu4HI	GCNGC	3 cut(s)	91, 295, 770
Fsp4HI	GCNGC	3 cut(s)	91, 295, 770
FspBI	CTAG	4 cut(s)	86, 491, 558, 719
GlaI	GCGC	4 cut(s)	347, 374, 441, 599
GluI	GCNGC	3 cut(s)	91, 295, 770
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	348, 375, 442, 600
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	244, 283, 598, 832, 868, 877
Hin6I	GCGC	4 cut(s)	346, 373, 440, 598
HinP1I	GCGC	4 cut(s)	346, 373, 440, 598
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	65, 546
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	3 cut(s)	214, 469, 605
Hpy188I	TCNGA	4 cut(s)	55, 259, 264, 380
Hpy188III	TCNNGA	4 cut(s)	491, 624, 680, 719
Hpy8I	GTNNAC	3 cut(s)	214, 469, 605
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	417, 847
HpyCH4IV	ACGT	4 cut(s)	339, 895, 906, 913
HpyCH4V	TGCA	5 cut(s)	72, 186, 207, 244, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 874
HpySE526I	ACGT	4 cut(s)	339, 895, 906, 913
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	244, 283, 598, 832, 868, 877
HspAI	GCGC	4 cut(s)	346, 373, 440, 598
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
LmnI	GCTCC	2 cut(s)	283, 715
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	86, 491, 558, 719
MaeII	ACGT	4 cut(s)	339, 895, 906, 913
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	6 cut(s)	108, 161, 261, 300, 309, 508
MboI	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
MboII	GAAGA	5 cut(s)	18, 516, 737, 747, 750
MflI	RGATCY	3 cut(s)	106, 159, 506
MluCI	AATT	6 cut(s)	169, 434, 647, 753, 764, 817
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	9 cut(s)	22, 109, 228, 386, 403, 439, 645, 671, 715
Mph1103I	ATGCAT	2 cut(s)	246, 834
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	3 cut(s)	213, 369, 446
MslI	CAYNNNNRTG	2 cut(s)	239, 464
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	3 cut(s)	297, 442, 600
MwoI	GCNNNNNNNGC	2 cut(s)	370, 874
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 288
NdeII	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	6 cut(s)	244, 283, 598, 832, 868, 877
NlaIV	GGNNCC	1 cut(s)	355
NsiI	ATGCAT	2 cut(s)	246, 834
NspI	RCATGY	2 cut(s)	244, 832
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	2 cut(s)	65, 546
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	92, 296, 771
PmaCI	CACGTG	1 cut(s)	914
PmlI	CACGTG	1 cut(s)	914
Ppu21I	YACGTR	2 cut(s)	896, 914
Psp1406I	AACGTT	1 cut(s)	339
PspCI	CACGTG	1 cut(s)	914
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	870
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	106, 159, 506
RsaI	GTAC	4 cut(s)	470, 572, 805, 909
RsaNI	GTAC	4 cut(s)	469, 571, 804, 908
RseI	CAYNNNNRTG	2 cut(s)	239, 464
SaqAI	TTAA	3 cut(s)	213, 369, 446
SatI	GCNGC	3 cut(s)	91, 295, 770
Sau3AI	GATC	6 cut(s)	106, 159, 259, 298, 307, 506
Sau96I	GGNCC	1 cut(s)	870
ScrFI	CCNGG	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	70, 153, 582
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	2 cut(s)	239, 464
SmlI	CTYRAG	2 cut(s)	368, 680
SmoI	CTYRAG	2 cut(s)	368, 680
SnaBI	TACGTA	1 cut(s)	896
Sse9I	AATT	6 cut(s)	169, 434, 647, 753, 764, 817
SsiI	CCGC	5 cut(s)	295, 442, 600, 769, 868
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	4 cut(s)	86, 491, 558, 719
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	417, 847
TaiI	ACGT	4 cut(s)	342, 898, 909, 916
TaqI	TCGA	4 cut(s)	237, 330, 431, 544
TasI	AATT	6 cut(s)	169, 434, 647, 753, 764, 817
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	2 cut(s)	297, 772
TfiI	GAWTC	2 cut(s)	65, 546
Tru1I	TTAA	3 cut(s)	213, 369, 446
Tru9I	TTAA	3 cut(s)	213, 369, 446
TscAI	CASTG	2 cut(s)	38, 471
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	2 cut(s)	33, 660
TspGWI	ACGGA	2 cut(s)	539, 588
TspRI	CASTG	2 cut(s)	38, 471
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	2 cut(s)	434, 817
XbaI	TCTAGA	2 cut(s)	490, 718
XceI	RCATGY	2 cut(s)	244, 832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	548, 671
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	4 cut(s)	86, 491, 558, 719
Zsp2I	ATGCAT	2 cut(s)	246, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.