RLG00000032224

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014855
Physical Location & Seq
Forward (+)
12246281 .. 12247147
867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032224

Sequence Viewer

Length: 591 bp
ATGGGAAGATCCTCATATAAAACCACCCAACACTGTCGGAAGCGAAGTTTCTCGGACACCCAAGAATACTGCGGAGAGCAAAAGCGAGCCTGCCGAAACTGGTTGGATCTCCCGGAGGACCTAACGGCGTCAATATTTTCAAGGTTGAAAGCCACAGAGATCTTGCATGATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCGAACCATCGACATGGATCATCACCTTATGGATGATTTCATCTACGGCAGCATGGAGCATATGTGCCGCGACCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAACCTTTCGCTTTCCAAATTTAACCAAACTAATGATGAATTGAGAAAAATCCTCGAGTCCTGTCTTGGTCTTGAAACACTTGATTTGGGTGAGAGTTTTCTTCCATATCTAGAGGAAGATTTGGGAAGAAGATGTGCTGAACAAATTAGAAAAAAATTGGAGCTTCCCTATAACTACGACATCGAGAAGTATTTACCACAAGTAACGAATAACAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

197

Amino Acids

23.05

Weight (kDa)

6.52

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 34 - 81 2.7e-10 F-box-like
F-box PF00646 34 - 73 2.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 72, 295
AclI AACGTT 1 cut(s) 339
AclWI GGATC 3 cut(s) 3, 114, 252
AcsI RAATTY 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 128
AgsI TTSAA 4 cut(s) 141, 148, 199, 443
AluBI AGCT 3 cut(s) 178, 315, 532
AluI AGCT 3 cut(s) 178, 315, 532
AlwI GGATC 3 cut(s) 3, 114, 252
Ama87I CYCGRG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 242, 470
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 186, 242
BceAI ACGGC 2 cut(s) 141, 289
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 479
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 277, 295
BlsI GCNGC 2 cut(s) 278, 296
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 422
Bsp143I GATC 5 cut(s) 8, 106, 159, 244, 307
BspACI CCGC 2 cut(s) 72, 295
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 3 cut(s) 3, 114, 252
BspT107I GGYRCC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 104
BssMI GATC 5 cut(s) 8, 106, 159, 244, 307
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 87, 91
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 5 cut(s) 11, 109, 162, 247, 310
BstMBI GATC 5 cut(s) 8, 106, 159, 244, 307
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 288
BstX2I RGATCY 3 cut(s) 8, 106, 159
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 3 cut(s) 8, 106, 159
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 87, 91
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 117
CviAII CATG 3 cut(s) 167, 241, 280
CviJI RGCY 6 cut(s) 89, 152, 178, 315, 364, 532
CviKI_1 RGCY 6 cut(s) 89, 152, 178, 315, 364, 532
DpnI GATC 5 cut(s) 10, 108, 161, 246, 309
DpnII GATC 5 cut(s) 8, 106, 159, 244, 307
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 118
EcoRV GATATC 1 cut(s) 334
FaeI CATG 3 cut(s) 170, 244, 283
FatI CATG 3 cut(s) 166, 240, 279
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 277, 295
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 277, 295
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 277, 295
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 170, 244, 283
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 425
HpaI GTTAAC 1 cut(s) 214
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 242, 470
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 39, 55
Hpy188III TCNNGA 3 cut(s) 440, 479, 553
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 166, 186, 207
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 170, 244, 283
HspAI GCGC 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 5 cut(s) 8, 106, 159, 244, 307
LmnI GCTCC 2 cut(s) 283, 529
LpnPI CCDG 6 cut(s) 85, 103, 126, 206, 346, 442
Lsp1109I GCAGC 1 cut(s) 288
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 571
MalI GATC 5 cut(s) 10, 108, 161, 246, 309
MboI GATC 5 cut(s) 8, 106, 159, 244, 307
MboII GAAGA 5 cut(s) 18, 461, 497, 507, 510
MflI RGATCY 3 cut(s) 8, 106, 159
MluCI AATT 4 cut(s) 386, 407, 513, 524
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 17, 84
MnlI CCTC 6 cut(s) 22, 109, 228, 311, 431, 475
MseI TTAA 3 cut(s) 213, 369, 390
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 297
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 288
NdeII GATC 5 cut(s) 8, 106, 159, 244, 307
NlaIII CATG 3 cut(s) 170, 244, 283
NlaIV GGNNCC 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 278, 296
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 118
Psp1406I AACGTT 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
PspXI VCTCGAGB 1 cut(s) 422
PsuI RGATCY 3 cut(s) 8, 106, 159
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 3 cut(s) 213, 369, 390
SatI GCNGC 2 cut(s) 277, 295
Sau3AI GATC 5 cut(s) 8, 106, 159, 244, 307
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 386, 407, 513, 524
SsiI CCGC 2 cut(s) 72, 295
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 342
TaqI TCGA 4 cut(s) 237, 330, 423, 552
TasI AATT 4 cut(s) 386, 407, 513, 524
TauI GCSGC 1 cut(s) 297
Tru1I TTAA 3 cut(s) 213, 369, 390
Tru9I TTAA 3 cut(s) 213, 369, 390
TscAI CASTG 1 cut(s) 38
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 256, 420
TspRI CASTG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 422
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.