Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Reverse (-)

11483860 .. 11486701

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGAAGATCCTCATATGAAACCACCCAACACTGCCCGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGTAGCTGTGGTGGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTACATAACTGATAGTAGTTCATGTGGAATCAGGCGCCTCCGATTGGAATGTTGCCCCAAGATAACAAATGAGGGACTGTGTGGAGTGGCCTCGAAATTTGCGCGGTTAAAAGAGCTTGACATTTCAGTGTACTTTCTCTCGTGTAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAACCTGAACCATCGATTCCGTGGGGCTAGCTACTCTATGTACGGAGACACTATAGCACGAACCATGCGCGGTTTACACAACCTTTCGCTTTCTGGATTTGTGCTAACTAATGATGAATTGAGGAAAATCCTCGAGTCCTGTCTTGGTCTTGAGACACTTGATTTGGAGGCTTCAATTGAAGTATTCGGAACTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

253

Amino Acids

28.73

Weight (kDa)

8.34

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	3.6e-10	F-box-like
F-box	PF00646	34 - 73	1.6e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 405
AccII	CGCG	3 cut(s)	297, 475, 633
AciI	CCGC	3 cut(s)	295, 475, 633
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	3 cut(s)	3, 114, 267
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	128, 406
AfaI	GTAC	3 cut(s)	374, 503, 605
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	141, 148, 199, 565, 738, 743
AluBI	AGCT	6 cut(s)	85, 152, 178, 315, 487, 594
AluI	AGCT	6 cut(s)	85, 152, 178, 315, 487, 594
Alw26I	GTCTC	2 cut(s)	603, 710
AlwI	GGATC	3 cut(s)	3, 114, 267
Ama87I	CYCGRG	2 cut(s)	60, 695
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AspLEI	GCGC	4 cut(s)	348, 408, 475, 633
AsuC2I	CCSGG	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	60, 695
BanI	GGYRCC	2 cut(s)	353, 405
BauI	CACGAG	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	3 cut(s)	186, 242, 582
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	603, 710
BfaI	CTAG	3 cut(s)	86, 524, 591
BfmI	CTRYAG	3 cut(s)	70, 153, 615
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	2 cut(s)	159, 539
BisI	GCNGC	2 cut(s)	91, 295
BlsI	GCNGC	2 cut(s)	92, 296
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	2 cut(s)	60, 695
BmiI	GGNNCC	2 cut(s)	355, 407
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	128, 406
BsaJI	CCNNGG	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	297, 475, 633
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	2 cut(s)	353, 405
BshVI	ATCGAT	1 cut(s)	577
BsiHKCI	CYCGRG	2 cut(s)	60, 695
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	603, 710
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	60, 695
Bsp143I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BspACI	CCGC	3 cut(s)	295, 475, 633
BspANI	GGCC	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	297, 475, 633
BspLI	GGNNCC	2 cut(s)	355, 407
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	3 cut(s)	3, 114, 267
BspT107I	GGYRCC	2 cut(s)	353, 405
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BssNI	GRCGYC	2 cut(s)	128, 406
BssSI	CACGAG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	450
BstACI	GRCGYC	2 cut(s)	128, 406
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	583
BstFNI	CGCG	3 cut(s)	297, 475, 633
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	4 cut(s)	348, 408, 475, 633
BstKTI	GATC	7 cut(s)	11, 109, 162, 262, 301, 310, 542
BstMAI	GTCTC	2 cut(s)	603, 710
BstMBI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	70, 153, 615
BstUI	CGCG	3 cut(s)	297, 475, 633
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	4 cut(s)	8, 106, 159, 539
BstYI	RGATCY	4 cut(s)	8, 106, 159, 539
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 504
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	4 cut(s)	348, 408, 475, 633
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	373, 502, 604
CviAII	CATG	4 cut(s)	241, 280, 393, 628
CviQI	GTAC	3 cut(s)	373, 502, 604
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
DpnII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
Eco32I	GATATC	1 cut(s)	334
Eco88I	CYCGRG	2 cut(s)	60, 695
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
FaeI	CATG	4 cut(s)	244, 283, 396, 631
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	4 cut(s)	240, 279, 392, 627
FauNDI	CATATG	2 cut(s)	16, 288
Fnu4HI	GCNGC	2 cut(s)	91, 295
Fsp4HI	GCNGC	2 cut(s)	91, 295
FspBI	CTAG	3 cut(s)	86, 524, 591
GlaI	GCGC	4 cut(s)	347, 407, 474, 632
GluI	GCNGC	2 cut(s)	91, 295
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	348, 408, 475, 633
Hin1I	GRCGYC	2 cut(s)	128, 406
Hin1II	CATG	4 cut(s)	244, 283, 396, 631
Hin6I	GCGC	4 cut(s)	346, 406, 473, 631
HinP1I	GCGC	4 cut(s)	346, 406, 473, 631
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	65, 399, 579, 698
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	214, 502, 638
Hpy188I	TCNGA	5 cut(s)	55, 259, 264, 413, 752
Hpy188III	TCNNGA	3 cut(s)	524, 657, 713
Hpy8I	GTNNAC	3 cut(s)	214, 502, 638
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	4 cut(s)	72, 186, 207, 244
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	128, 406
Hsp92II	CATG	4 cut(s)	244, 283, 396, 631
HspAI	GCGC	4 cut(s)	346, 406, 473, 631
KasI	GGCGCC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	82, 85, 126, 206, 346, 388, 581, 642, 715
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	86, 524, 591
MaeII	ACGT	1 cut(s)	339
MalI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
MboI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
MboII	GAAGA	2 cut(s)	18, 549
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	4 cut(s)	8, 106, 159, 539
MluCI	AATT	4 cut(s)	169, 467, 680, 738
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	9 cut(s)	22, 109, 228, 419, 436, 472, 678, 704, 724
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	3 cut(s)	213, 369, 479
MslI	CAYNNNNRTG	2 cut(s)	239, 497
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	738
MvnI	CGCG	3 cut(s)	297, 475, 633
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 288
NdeII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	4 cut(s)	244, 283, 396, 631
NlaIV	GGNNCC	2 cut(s)	355, 407
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	65, 399, 579
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	92, 296
PleI	GAGTC	1 cut(s)	706
PluTI	GGCGCC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	355, 407
PspXI	VCTCGAGB	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	4 cut(s)	8, 106, 159, 539
RsaI	GTAC	3 cut(s)	374, 503, 605
RsaNI	GTAC	3 cut(s)	373, 502, 604
RseI	CAYNNNNRTG	2 cut(s)	239, 497
SaqAI	TTAA	3 cut(s)	213, 369, 479
SatI	GCNGC	2 cut(s)	91, 295
Sau3AI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	70, 153, 615
SfoI	GGCGCC	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	239, 497
SmlI	CTYRAG	3 cut(s)	368, 695, 713
SmoI	CTYRAG	3 cut(s)	368, 695, 713
Sse9I	AATT	4 cut(s)	169, 467, 680, 738
SsiI	CCGC	3 cut(s)	295, 475, 633
SspDI	GGCGCC	1 cut(s)	405
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	3 cut(s)	86, 524, 591
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	237, 330, 464, 577, 696
TasI	AATT	4 cut(s)	169, 467, 680, 738
TatI	WGTACW	2 cut(s)	372, 501
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	65, 399, 579
Tru1I	TTAA	3 cut(s)	213, 369, 479
Tru9I	TTAA	3 cut(s)	213, 369, 479
TscAI	CASTG	2 cut(s)	38, 504
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	33, 381, 693
TspGWI	ACGGA	2 cut(s)	572, 621
TspRI	CASTG	2 cut(s)	38, 504
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	695
XspI	CTAG	3 cut(s)	86, 524, 591
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.