Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011313.1

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Forward (+)

5165 .. 5830

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011313.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgggaagatcctcatataaaaccacccaacactgtcggaagcgaagtttctcggacacccaagaatactgcggagagcaaaagcgagcctgccgaaactggttggatctcccggaggacctaacggcgtcaatattttcaacgttgaaagccacagagatcttgcatgattgtcagcttgtgtgcaagagatggttaaaaatctgcaaggttaacggccctctggtatggcgaaccatcgacatggatcatcaccttatggatgatttcatctacggcagcatggagcatatgtgccgcgacctcattgatcgtagctgtggtagtttggtcgatatcaacgttgtgcgcttcggcaccgacaggcttcttaagtccataactgatagtagttcatgtggaatcagacgcctacgattggaagattgtccccagataacagatgagggattgtgtggagtggcctcgaaatttgctcggttaaaagagcttgacatttcagaatgctttctctcttataaaactctagaagtgattggaagatcttgcccccttttagtatcattgaaactgaaacgtcgattcaacgagagggggctctatgtacggatacactatagcacgaaacatgcgcggtttacacagcctttcgctttctcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

221

Amino Acids

25.62

Weight (kDa)

8.88

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	2 cut(s)	300, 634
AciI	CCGC	3 cut(s)	72, 298, 634
AclI	AACGTT	2 cut(s)	143, 342
AclWI	GGATC	3 cut(s)	3, 114, 255
AcsI	RAATTY	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	128, 409
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	141, 148, 568, 586
AluBI	AGCT	3 cut(s)	178, 318, 490
AluI	AGCT	3 cut(s)	178, 318, 490
AlwI	GGATC	3 cut(s)	3, 114, 255
AoxI	GGCC	2 cut(s)	217, 462
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	351, 634
AspS9I	GGNCC	2 cut(s)	118, 218
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	186, 245
BceAI	ACGGC	3 cut(s)	141, 232, 292
BciVI	GTATCC	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	616
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	603
BglII	AGATCT	2 cut(s)	159, 542
BisI	GCNGC	2 cut(s)	280, 298
BlsI	GCNGC	2 cut(s)	281, 299
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 218
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	128, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	291
Bsh1236I	CGCG	2 cut(s)	300, 634
BshFI	GGCC	2 cut(s)	219, 464
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	219, 464
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
BspACI	CCGC	3 cut(s)	72, 298, 634
BspANI	GGCC	2 cut(s)	219, 464
BspFNI	CGCG	2 cut(s)	300, 634
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	3 cut(s)	3, 114, 255
BspT107I	GGYRCC	1 cut(s)	356
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
BssNI	GRCGYC	2 cut(s)	128, 409
Bst4CI	ACNGT	1 cut(s)	35
BstACI	GRCGYC	2 cut(s)	128, 409
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	87, 91
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	300, 634
BstHHI	GCGC	2 cut(s)	351, 634
BstKTI	GATC	6 cut(s)	11, 109, 162, 250, 313, 545
BstMBI	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	2 cut(s)	300, 634
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	4 cut(s)	8, 106, 159, 542
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	4 cut(s)	8, 106, 159, 542
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	2 cut(s)	219, 464
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	87, 91
CfoI	GCGC	2 cut(s)	351, 634
Cfr13I	GGNCC	2 cut(s)	118, 218
CseI	GACGC	2 cut(s)	117, 417
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	5 cut(s)	167, 244, 283, 396, 629
CviQI	GTAC	1 cut(s)	605
DpnI	GATC	6 cut(s)	10, 108, 161, 249, 312, 544
DpnII	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
Eco24I	GRGCYC	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	5 cut(s)	170, 247, 286, 399, 632
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	5 cut(s)	166, 243, 282, 395, 628
FauNDI	CATATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	280, 298
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	2 cut(s)	280, 298
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	2 cut(s)	350, 633
GluI	GCNGC	2 cut(s)	280, 298
HaeIII	GGCC	2 cut(s)	219, 464
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	117, 417
HhaI	GCGC	2 cut(s)	351, 634
Hin1I	GRCGYC	2 cut(s)	128, 409
Hin1II	CATG	5 cut(s)	170, 247, 286, 399, 632
Hin6I	GCGC	2 cut(s)	349, 632
HinP1I	GCGC	2 cut(s)	349, 632
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	402, 582
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	214, 639
Hpy188I	TCNGA	4 cut(s)	39, 55, 407, 502
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	2 cut(s)	214, 639
Hpy99I	CGWCG	1 cut(s)	582
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	3 cut(s)	143, 342, 577
HpyCH4V	TGCA	3 cut(s)	166, 186, 207
HpySE526I	ACGT	3 cut(s)	143, 342, 577
Hsp92I	GRCGYC	2 cut(s)	128, 409
Hsp92II	CATG	5 cut(s)	170, 247, 286, 399, 632
HspAI	GCGC	2 cut(s)	349, 632
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	85, 103, 126, 209, 349, 446
Lsp1109I	GCAGC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	3 cut(s)	143, 342, 577
MalI	GATC	6 cut(s)	10, 108, 161, 249, 312, 544
MboI	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
MboII	GAAGA	3 cut(s)	18, 434, 552
MflI	RGATCY	4 cut(s)	8, 106, 159, 542
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	2 cut(s)	470, 660
MmeI	TCCRAC	2 cut(s)	17, 84
MnlI	CCTC	7 cut(s)	22, 109, 231, 314, 439, 475, 585
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	5 cut(s)	197, 213, 372, 482, 664
MslI	CAYNNNNRTG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	509
MvnI	CGCG	2 cut(s)	300, 634
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
NlaIII	CATG	5 cut(s)	170, 247, 286, 399, 632
NlaIV	GGNNCC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	402, 582
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	281, 299
PpuMI	RGGWCCY	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	519
Psp1406I	AACGTT	2 cut(s)	143, 342
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	118, 218
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	4 cut(s)	8, 106, 159, 542
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	5 cut(s)	197, 213, 372, 482, 664
SatI	GCNGC	2 cut(s)	280, 298
Sau3AI	GATC	6 cut(s)	8, 106, 159, 247, 310, 542
Sau96I	GGNCC	2 cut(s)	118, 218
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	616
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	470, 660
SsiI	CCGC	3 cut(s)	72, 298, 634
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	3 cut(s)	146, 345, 580
TaqI	TCGA	4 cut(s)	240, 333, 467, 580
TasI	AATT	2 cut(s)	470, 660
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	402, 582
Tru1I	TTAA	5 cut(s)	197, 213, 372, 482, 664
Tru9I	TTAA	5 cut(s)	197, 213, 372, 482, 664
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	259, 384
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	470
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.