Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Reverse (-)

11315082 .. 11316038

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGAAGATCCTCATATGAAACCACCCAACACTGCCCGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGTAGCTGTGGTGGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTACATAACTGATAGTAGTTCATGTGGAATCAGGCGCCTCCGATTGGAATGTTGCCCCAAGATAACAAATGAGGGACTGTGTGGAGTGGCCTCGAAATTTGCGCGGTTAAAAGAGCTTGACATTTCAGTGTACTTTCTCTCGTGTAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAACCTGAACCATCGATTCCGTGGGGCTAGCTACTCTATGTACGGAGACACTATAGCACGAACCATGCGCGGTTTACACAACCTTTCGCTTTCTGGATTTGTGCTAACTAATGATGAATTGAGGAAAATCCTCGAGTCCTGTCTTGGTCTTGAGACACTTGATTTGGGTGAGTGTTTTGTTCCAAATCTAGATGAAGATTTGAGAAGAAGATGTGTGGAACAAATTAGAAAAAAATTGCGGCTTCCCTACAACTTTGCTTATTATGACTTTCGTACAAGGACGAAAAATTTCCATCACATGCATAGAGTAACAACAGCTGAACGAAAACAAACCATGCGGACCATGCGTTTAGAGAGATATTTACGTAGAGCAAACGTACCACGTGGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

318

Amino Acids

37.12

Weight (kDa)

9.32

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	5.2e-10	F-box-like
F-box	PF00646	34 - 73	2.3e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 405
AccII	CGCG	3 cut(s)	297, 475, 633
AciI	CCGC	5 cut(s)	295, 475, 633, 802, 901
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	3 cut(s)	3, 114, 267
AcsI	RAATTY	2 cut(s)	467, 850
AcvI	CACGTG	1 cut(s)	947
AcyI	GRCGYC	2 cut(s)	128, 406
AfaI	GTAC	5 cut(s)	374, 503, 605, 838, 942
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	141, 148, 199, 565
AluBI	AGCT	7 cut(s)	85, 152, 178, 315, 487, 594, 881
AluI	AGCT	7 cut(s)	85, 152, 178, 315, 487, 594, 881
Alw26I	GTCTC	2 cut(s)	603, 710
AlwI	GGATC	3 cut(s)	3, 114, 267
Ama87I	CYCGRG	2 cut(s)	60, 695
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	467, 850
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	4 cut(s)	348, 408, 475, 633
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	743
AsuNHI	GCTAGC	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	60, 695
AvaII	GGWCC	1 cut(s)	903
BanI	GGYRCC	2 cut(s)	353, 405
BauI	CACGAG	1 cut(s)	511
BbrPI	CACGTG	1 cut(s)	947
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	4 cut(s)	186, 242, 582, 864
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	603, 710
BfaI	CTAG	4 cut(s)	86, 524, 591, 752
BfmI	CTRYAG	3 cut(s)	70, 153, 615
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	2 cut(s)	159, 539
BisI	GCNGC	3 cut(s)	91, 295, 803
BlsI	GCNGC	3 cut(s)	92, 296, 804
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	903
BmeT110I	CYCGRG	2 cut(s)	60, 695
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	2 cut(s)	355, 407
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	577
BsaAI	YACGTR	2 cut(s)	929, 947
BsaHI	GRCGYC	2 cut(s)	128, 406
BsaJI	CCNNGG	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	297, 475, 633
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	2 cut(s)	353, 405
BshVI	ATCGAT	1 cut(s)	577
BsiHKCI	CYCGRG	2 cut(s)	60, 695
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	603, 710
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	60, 695
Bsp143I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BspACI	CCGC	5 cut(s)	295, 475, 633, 802, 901
BspANI	GGCC	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	297, 475, 633
BspLI	GGNNCC	2 cut(s)	355, 407
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	3 cut(s)	3, 114, 267
BspT107I	GGYRCC	2 cut(s)	353, 405
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BssNI	GRCGYC	2 cut(s)	128, 406
BssSI	CACGAG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	450
BstACI	GRCGYC	2 cut(s)	128, 406
BstAFI	CTTAAG	1 cut(s)	368
BstBAI	YACGTR	2 cut(s)	929, 947
BstC8I	GCNNGC	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	583
BstFNI	CGCG	3 cut(s)	297, 475, 633
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	4 cut(s)	348, 408, 475, 633
BstKTI	GATC	7 cut(s)	11, 109, 162, 262, 301, 310, 542
BstMAI	GTCTC	2 cut(s)	603, 710
BstMBI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNSI	RCATGY	2 cut(s)	244, 865
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	70, 153, 615
BstSNI	TACGTA	1 cut(s)	929
BstUI	CGCG	3 cut(s)	297, 475, 633
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	4 cut(s)	8, 106, 159, 539
BstXI	CCANNNNNNTGG	1 cut(s)	951
BstYI	RGATCY	4 cut(s)	8, 106, 159, 539
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 504
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	4 cut(s)	348, 408, 475, 633
Cfr13I	GGNCC	1 cut(s)	903
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	5 cut(s)	373, 502, 604, 837, 941
CviAII	CATG	7 cut(s)	241, 280, 393, 628, 862, 898, 907
CviQI	GTAC	5 cut(s)	373, 502, 604, 837, 941
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
DpnII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
Eco105I	TACGTA	1 cut(s)	929
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	903
Eco72I	CACGTG	1 cut(s)	947
Eco88I	CYCGRG	2 cut(s)	60, 695
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	246, 867
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
FaeI	CATG	7 cut(s)	244, 283, 396, 631, 865, 901, 910
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	7 cut(s)	240, 279, 392, 627, 861, 897, 906
FauNDI	CATATG	2 cut(s)	16, 288
Fnu4HI	GCNGC	3 cut(s)	91, 295, 803
Fsp4HI	GCNGC	3 cut(s)	91, 295, 803
FspBI	CTAG	4 cut(s)	86, 524, 591, 752
GlaI	GCGC	4 cut(s)	347, 407, 474, 632
GluI	GCNGC	3 cut(s)	91, 295, 803
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	348, 408, 475, 633
Hin1I	GRCGYC	2 cut(s)	128, 406
Hin1II	CATG	7 cut(s)	244, 283, 396, 631, 865, 901, 910
Hin6I	GCGC	4 cut(s)	346, 406, 473, 631
HinP1I	GCGC	4 cut(s)	346, 406, 473, 631
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	65, 399, 579, 698
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	3 cut(s)	214, 502, 638
Hpy188I	TCNGA	4 cut(s)	55, 259, 264, 413
Hpy188III	TCNNGA	4 cut(s)	524, 657, 713, 752
Hpy8I	GTNNAC	3 cut(s)	214, 502, 638
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	4 cut(s)	339, 928, 939, 946
HpyCH4V	TGCA	5 cut(s)	72, 186, 207, 244, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpySE526I	ACGT	4 cut(s)	339, 928, 939, 946
Hsp92I	GRCGYC	2 cut(s)	128, 406
Hsp92II	CATG	7 cut(s)	244, 283, 396, 631, 865, 901, 910
HspAI	GCGC	4 cut(s)	346, 406, 473, 631
KasI	GGCGCC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	86, 524, 591, 752
MaeII	ACGT	4 cut(s)	339, 928, 939, 946
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
MboI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
MboII	GAAGA	5 cut(s)	18, 549, 770, 780, 783
MflI	RGATCY	4 cut(s)	8, 106, 159, 539
MluCI	AATT	6 cut(s)	169, 467, 680, 786, 797, 850
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	22, 109, 228, 419, 436, 472, 678, 704
Mph1103I	ATGCAT	2 cut(s)	246, 867
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	3 cut(s)	213, 369, 479
MslI	CAYNNNNRTG	2 cut(s)	239, 497
MspA1I	CMGCKG	1 cut(s)	881
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	3 cut(s)	297, 475, 633
MwoI	GCNNNNNNNGC	1 cut(s)	907
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 288
NdeII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	7 cut(s)	244, 283, 396, 631, 865, 901, 910
NlaIV	GGNNCC	2 cut(s)	355, 407
NsiI	ATGCAT	2 cut(s)	246, 867
NspI	RCATGY	2 cut(s)	244, 865
PaeR7I	CTCGAG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	3 cut(s)	65, 399, 579
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	92, 296, 804
PleI	GAGTC	1 cut(s)	706
PluTI	GGCGCC	1 cut(s)	409
PmaCI	CACGTG	1 cut(s)	947
PmlI	CACGTG	1 cut(s)	947
PpsI	GAGTC	1 cut(s)	706
Ppu21I	YACGTR	2 cut(s)	929, 947
Psp1406I	AACGTT	1 cut(s)	339
PspCI	CACGTG	1 cut(s)	947
PspN4I	GGNNCC	2 cut(s)	355, 407
PspPI	GGNCC	1 cut(s)	903
PspXI	VCTCGAGB	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	4 cut(s)	8, 106, 159, 539
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	5 cut(s)	374, 503, 605, 838, 942
RsaNI	GTAC	5 cut(s)	373, 502, 604, 837, 941
RseI	CAYNNNNRTG	2 cut(s)	239, 497
SaqAI	TTAA	3 cut(s)	213, 369, 479
SatI	GCNGC	3 cut(s)	91, 295, 803
Sau3AI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	70, 153, 615
SfoI	GGCGCC	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	695
SinI	GGWCC	1 cut(s)	903
SlaI	CTCGAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	239, 497
SmlI	CTYRAG	3 cut(s)	368, 695, 713
SmoI	CTYRAG	3 cut(s)	368, 695, 713
SnaBI	TACGTA	1 cut(s)	929
Sse9I	AATT	6 cut(s)	169, 467, 680, 786, 797, 850
SsiI	CCGC	5 cut(s)	295, 475, 633, 802, 901
SspDI	GGCGCC	1 cut(s)	405
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	4 cut(s)	86, 524, 591, 752
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	4 cut(s)	342, 931, 942, 949
TaqI	TCGA	5 cut(s)	237, 330, 464, 577, 696
TasI	AATT	6 cut(s)	169, 467, 680, 786, 797, 850
TatI	WGTACW	2 cut(s)	372, 501
TauI	GCSGC	2 cut(s)	297, 805
TfiI	GAWTC	3 cut(s)	65, 399, 579
Tru1I	TTAA	3 cut(s)	213, 369, 479
Tru9I	TTAA	3 cut(s)	213, 369, 479
TscAI	CASTG	2 cut(s)	38, 504
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	33, 381, 693, 771
TspGWI	ACGGA	2 cut(s)	572, 621
TspRI	CASTG	2 cut(s)	38, 504
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	2 cut(s)	467, 850
XbaI	TCTAGA	2 cut(s)	523, 751
XceI	RCATGY	2 cut(s)	244, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	695
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	4 cut(s)	86, 524, 591, 752
Zsp2I	ATGCAT	2 cut(s)	246, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.