Rh5AG126000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014855
Physical Location & Seq
Reverse (-)
11878709 .. 11880057
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG126000.1

Sequence Viewer

Length: 309 bp
ATGGGAAGATCCTCATATGAAACCACCGAACACTGCCCGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTTGTGTTACATTTGCCCATTCATAATGTAAACATTCCTGCGCTAAGTGCCGCAATCACACATGATCGAAATCCAGATCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

102

Amino Acids

11.76

Weight (kDa)

8.62

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 34 - 70 4.2e-09 F-box-like
F-box PF00646 34 - 73 2.7e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 3, 114
AcyI GRCGYC 1 cut(s) 128
AgsI TTSAA 3 cut(s) 141, 148, 199
AluBI AGCT 3 cut(s) 85, 152, 178
AluI AGCT 3 cut(s) 85, 152, 178
AlwI GGATC 2 cut(s) 3, 114
Ama87I CYCGRG 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 70, 153
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 91, 273
BlsI GCNGC 2 cut(s) 92, 274
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 291
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 5 cut(s) 8, 106, 159, 286, 298
BspACI CCGC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 2 cut(s) 3, 114
BsrI ACTGG 1 cut(s) 104
BssMI GATC 5 cut(s) 8, 106, 159, 286, 298
BssNI GRCGYC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 11, 109, 162, 289, 301
BstMBI GATC 5 cut(s) 8, 106, 159, 286, 298
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 70, 153
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 8, 106, 159
BstYI RGATCY 3 cut(s) 8, 106, 159
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 265
CseI GACGC 1 cut(s) 117
CviAII CATG 1 cut(s) 284
CviJI RGCY 4 cut(s) 85, 90, 152, 178
CviKI_1 RGCY 4 cut(s) 85, 90, 152, 178
DdeI CTNAG 1 cut(s) 266
DpnI GATC 5 cut(s) 10, 108, 161, 288, 300
DpnII GATC 5 cut(s) 8, 106, 159, 286, 298
Eco88I CYCGRG 1 cut(s) 60
FaeI CATG 1 cut(s) 287
FaiI YATR 5 cut(s) 16, 18, 122, 246, 285
FatI CATG 1 cut(s) 283
FauNDI CATATG 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 91, 273
Fsp4HI GCNGC 2 cut(s) 91, 273
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 91, 273
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 65
HpaI GTTAAC 1 cut(s) 214
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 214, 253
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 2 cut(s) 214, 253
HpyCH4V TGCA 3 cut(s) 72, 186, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 266
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 263
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 5 cut(s) 8, 106, 159, 286, 298
LpnPI CCDG 5 cut(s) 82, 85, 126, 206, 273
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 228
MalI GATC 5 cut(s) 10, 108, 161, 288, 300
MboI GATC 5 cut(s) 8, 106, 159, 286, 298
MboII GAAGA 1 cut(s) 18
MflI RGATCY 3 cut(s) 8, 106, 159
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 3 cut(s) 22, 109, 228
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 16
NdeII GATC 5 cut(s) 8, 106, 159, 286, 298
NlaIII CATG 1 cut(s) 287
PfeI GAWTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 92, 274
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 3 cut(s) 8, 106, 159
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 91, 273
Sau3AI GATC 5 cut(s) 8, 106, 159, 286, 298
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 87, 146, 154, 180, 213
SfcI CTRYAG 2 cut(s) 70, 153
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 273
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 289
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 38
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 33, 233
TspRI CASTG 1 cut(s) 38
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.