Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Reverse (-)

11314029 .. 11318234

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG124700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGAAGAACCTCATATGAAACCACCCAACACTGCCCGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTACATAACTGATAGTAGTTCTTGTGGAATCAGGCGCCTCCGATTGGAATGTTGCCCCAAGATAACAAATGAGGGACTGTGTGGAGTGGCCTCGAAATTTGCGCGGTTAAAAGAGCTTGACATTTCAGTGTACTTTCTCTCGTGTAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAACCTGAACCATCGATTCCGTGGGGCTAGCTACTCTATGTACGGAGACACTATAGCACGAACCATGCGCGGTTTACACAACCTTTCGCTTTCTGGATTTGTGCTGACTAATGATGAATTGAGGAAAATCCTCGAGTCCTGTCTTGGTCTTGAGACACTTGATTTGGAGAACCACCAAGTCCACCAACACAACATAAAACATCCCACCAAGACCCCTAGCCCAAAGAAGCAAGCCCACTTGGAGGCCCAAGCCACCCACCAAGCCCATCCTCCATCTTCCACAGTCCCCGACCAGTCGTCAGGGAAGAGTTCACCGCCGTCACCAACGCAACCCGCTCCACCAGCATTCGGGAGCCAGAGTGCCTCGATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

312

Amino Acids

35.09

Weight (kDa)

8.79

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	5e-10	F-box-like
F-box	PF00646	34 - 73	2.2e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 405
AccBSI	CCGCTC	1 cut(s)	899
AccII	CGCG	3 cut(s)	297, 475, 633
AciI	CCGC	5 cut(s)	295, 475, 633, 878, 897
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	2 cut(s)	114, 267
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	128, 406
AfaI	GTAC	3 cut(s)	374, 503, 605
AfiI	CCNNNNNNNGG	4 cut(s)	415, 805, 911, 933
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	141, 148, 199, 565
AhdI	GACNNNNNGTC	1 cut(s)	859
AluBI	AGCT	6 cut(s)	85, 152, 178, 315, 487, 594
AluI	AGCT	6 cut(s)	85, 152, 178, 315, 487, 594
Alw26I	GTCTC	2 cut(s)	603, 710
AlwI	GGATC	2 cut(s)	114, 267
Ama87I	CYCGRG	2 cut(s)	60, 695
AoxI	GGCC	2 cut(s)	459, 807
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AspLEI	GCGC	4 cut(s)	348, 408, 475, 633
AspS9I	GGNCC	1 cut(s)	808
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	867, 876
AsuNHI	GCTAGC	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	60, 695
BanI	GGYRCC	2 cut(s)	353, 405
BauI	CACGAG	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	5 cut(s)	186, 242, 582, 837, 844
BceAI	ACGGC	2 cut(s)	289, 865
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	603, 710
BfaI	CTAG	4 cut(s)	86, 524, 591, 780
BfmI	CTRYAG	3 cut(s)	70, 153, 615
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	2 cut(s)	159, 539
BisI	GCNGC	2 cut(s)	91, 295
BlsI	GCNGC	2 cut(s)	92, 296
Bme1390I	CCNGG	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmeT110I	CYCGRG	2 cut(s)	60, 695
BmgT120I	GGNCC	1 cut(s)	808
BmiI	GGNNCC	3 cut(s)	355, 407, 917
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	128, 406
BsaJI	CCNNGG	1 cut(s)	583
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 907, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 805, 911, 933
Bse1I	ACTGG	2 cut(s)	104, 856
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	2 cut(s)	763, 829
BseLI	CCNNNNNNNGG	4 cut(s)	415, 805, 911, 933
BseNI	ACTGG	2 cut(s)	104, 856
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	297, 475, 633
BshFI	GGCC	2 cut(s)	461, 809
BshNI	GGYRCC	2 cut(s)	353, 405
BshVI	ATCGAT	1 cut(s)	577
BsiHKCI	CYCGRG	2 cut(s)	60, 695
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	459, 833
BslI	CCNNNNNNNGG	4 cut(s)	415, 805, 911, 933
BsmAI	GTCTC	2 cut(s)	603, 710
BsmFI	GGGAC	2 cut(s)	459, 833
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	461, 809
BsoBI	CYCGRG	2 cut(s)	60, 695
Bsp143I	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
BspACI	CCGC	5 cut(s)	295, 475, 633, 878, 897
BspANI	GGCC	2 cut(s)	461, 809
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	297, 475, 633
BspLI	GGNNCC	3 cut(s)	355, 407, 917
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	114, 267
BspT107I	GGYRCC	2 cut(s)	353, 405
BspTI	CTTAAG	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	104, 856
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
BssNI	GRCGYC	2 cut(s)	128, 406
BssSI	CACGAG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	450, 847
Bst6I	CTCTTC	1 cut(s)	863
BstACI	GRCGYC	2 cut(s)	128, 406
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	592, 795
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	763, 829
BstFNI	CGCG	3 cut(s)	297, 475, 633
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	4 cut(s)	348, 408, 475, 633
BstKTI	GATC	7 cut(s)	109, 162, 262, 301, 310, 542, 933
BstMAI	GTCTC	2 cut(s)	603, 710
BstMBI	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	70, 153, 615
BstUI	CGCG	3 cut(s)	297, 475, 633
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	3 cut(s)	106, 159, 539
BstYI	RGATCY	3 cut(s)	106, 159, 539
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	461, 809
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	763, 829
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 504
Cac8I	GCNNGC	2 cut(s)	592, 795
CfoI	GCGC	4 cut(s)	348, 408, 475, 633
Cfr13I	GGNCC	1 cut(s)	808
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	373, 502, 604
CviAII	CATG	3 cut(s)	241, 280, 628
CviQI	GTAC	3 cut(s)	373, 502, 604
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	7 cut(s)	108, 161, 261, 300, 309, 541, 932
DpnII	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
DriI	GACNNNNNGTC	1 cut(s)	859
Eam1104I	CTCTTC	1 cut(s)	863
Eam1105I	GACNNNNNGTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	334
Eco88I	CYCGRG	2 cut(s)	60, 695
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
FaeI	CATG	3 cut(s)	244, 283, 631
FaqI	GGGAC	2 cut(s)	459, 833
FatI	CATG	3 cut(s)	240, 279, 627
FauI	CCCGC	1 cut(s)	904
FauNDI	CATATG	2 cut(s)	16, 288
Fnu4HI	GCNGC	2 cut(s)	91, 295
FokI	GGATG	2 cut(s)	750, 816
Fsp4HI	GCNGC	2 cut(s)	91, 295
FspBI	CTAG	4 cut(s)	86, 524, 591, 780
GlaI	GCGC	4 cut(s)	347, 407, 474, 632
GluI	GCNGC	2 cut(s)	91, 295
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	461, 809
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	348, 408, 475, 633
Hin1I	GRCGYC	2 cut(s)	128, 406
Hin1II	CATG	3 cut(s)	244, 283, 631
Hin6I	GCGC	4 cut(s)	346, 406, 473, 631
HinP1I	GCGC	4 cut(s)	346, 406, 473, 631
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	65, 399, 579, 698
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	867, 876
Hpy166II	GTNNAC	5 cut(s)	214, 502, 638, 745, 875
Hpy188I	TCNGA	4 cut(s)	55, 259, 264, 413
Hpy188III	TCNNGA	4 cut(s)	524, 657, 713, 913
Hpy8I	GTNNAC	5 cut(s)	214, 502, 638, 745, 875
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	450, 847
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	4 cut(s)	72, 186, 207, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	128, 406
Hsp92II	CATG	3 cut(s)	244, 283, 631
HspAI	GCGC	4 cut(s)	346, 406, 473, 631
KasI	GGCGCC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
LmnI	GCTCC	3 cut(s)	283, 904, 915
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	86, 524, 591, 780
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	882
MalI	GATC	7 cut(s)	108, 161, 261, 300, 309, 541, 932
MbiI	CCGCTC	1 cut(s)	899
MboI	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
MboII	GAAGA	4 cut(s)	18, 549, 831, 880
MflI	RGATCY	3 cut(s)	106, 159, 539
MluCI	AATT	3 cut(s)	169, 467, 680
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	3 cut(s)	213, 369, 479
MslI	CAYNNNNRTG	2 cut(s)	239, 497
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	908
MvnI	CGCG	3 cut(s)	297, 475, 633
MwoI	GCNNNNNNNGC	1 cut(s)	905
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 288
NdeII	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	244, 283, 631
NlaIV	GGNNCC	3 cut(s)	355, 407, 917
NmuCI	GTSAC	1 cut(s)	882
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	65, 399, 579
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	92, 296
PleI	GAGTC	1 cut(s)	706
PluTI	GGCGCC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	355, 407, 917
PspPI	GGNCC	1 cut(s)	808
PspXI	VCTCGAGB	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	106, 159, 539
RsaI	GTAC	3 cut(s)	374, 503, 605
RsaNI	GTAC	3 cut(s)	373, 502, 604
RseI	CAYNNNNRTG	2 cut(s)	239, 497
SaqAI	TTAA	3 cut(s)	213, 369, 479
SatI	GCNGC	2 cut(s)	91, 295
Sau3AI	GATC	7 cut(s)	106, 159, 259, 298, 307, 539, 930
Sau96I	GGNCC	1 cut(s)	808
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	70, 153, 615
SfoI	GGCGCC	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	239, 497
SmlI	CTYRAG	3 cut(s)	368, 695, 713
SmoI	CTYRAG	3 cut(s)	368, 695, 713
Sse9I	AATT	3 cut(s)	169, 467, 680
SsiI	CCGC	5 cut(s)	295, 475, 633, 878, 897
SspDI	GGCGCC	1 cut(s)	405
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	4 cut(s)	86, 524, 591, 780
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	450, 847
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	6 cut(s)	237, 330, 464, 577, 696, 929
TasI	AATT	3 cut(s)	169, 467, 680
TatI	WGTACW	2 cut(s)	372, 501
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	65, 399, 579
Tru1I	TTAA	3 cut(s)	213, 369, 479
Tru9I	TTAA	3 cut(s)	213, 369, 479
TscAI	CASTG	2 cut(s)	38, 504
TseFI	GTSAC	1 cut(s)	882
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	882
TspDTI	ATGAA	2 cut(s)	33, 693
TspGWI	ACGGA	2 cut(s)	572, 621
TspRI	CASTG	2 cut(s)	38, 504
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	695
XspI	CTAG	4 cut(s)	86, 524, 591, 780
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.