Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Forward (+)

82671320 .. 82672264

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAAGATCCTCATATGAAACCACCCAACACTGCCGGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCAAGGTTGAAAGCTACAGAGATCTTGGATAATTGCCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGCAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTACATAACTGATAGTAGTTCATGTGGAATCAGGCGCCTCCGATTGGAATGTTGCCCCAAGATAACAAATGAGGGACTGTGTGGAGTGGCCTCGAAATTTGCGCGGTTAAAAGAGCTTGACATTTCAGTGTGCTTTCTCTCGTGTAAAACTCTAGAAGTGATTGGAAGATCTTGCCCCCTTTTAGTATCATTGAACCTGAACCTGAACCTGAACCATCGATTCCGTGGGGCTAGCAACTCTATGTACGGAGACACCATAGCACGAACCATGCGCGGTTTACACAACCTTTCGCTTTCTGGATTTGTGCTGACTAATGATGAATTGAGGAAAATCCTCGAGTCCTGTCTTGGTCTTGAGACACTTGATTTGGGTGAGTGTTCTGTTCCAAATCTAGAGGAAGATTTGAGAAGAAGATGTGTGGAACAAATTAGAAAAAAATTGCGGCTTCCCGACAACTCTGCTTATTATCACTTTCGTACATTGAGGAAAAATTTCTATCACATGCATCAACAAACCATGCGGACCATGCGTTTAGAGAGTTATTTAAGTAGGGCAAACGTGCGTGGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

314

Amino Acids

36.41

Weight (kDa)

9.12

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	34 - 81	5.1e-10	F-box-like
F-box	PF00646	34 - 73	2.2e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 405
AccII	CGCG	3 cut(s)	297, 475, 645
AciI	CCGC	5 cut(s)	295, 475, 645, 814, 892
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	3 cut(s)	3, 114, 267
AcsI	RAATTY	2 cut(s)	467, 862
AcyI	GRCGYC	2 cut(s)	128, 406
AfaI	GTAC	3 cut(s)	374, 617, 850
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	141, 148, 199, 565
AluBI	AGCT	5 cut(s)	85, 152, 178, 315, 487
AluI	AGCT	5 cut(s)	85, 152, 178, 315, 487
Alw26I	GTCTC	2 cut(s)	615, 722
AlwI	GGATC	3 cut(s)	3, 114, 267
Ama87I	CYCGRG	2 cut(s)	60, 707
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	2 cut(s)	90, 312
ApoI	RAATTY	2 cut(s)	467, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
Asp700I	GAANNNNTTC	1 cut(s)	863
AspLEI	GCGC	4 cut(s)	348, 408, 475, 645
AspS9I	GGNCC	1 cut(s)	894
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	755
AsuNHI	GCTAGC	1 cut(s)	602
AvaI	CYCGRG	2 cut(s)	60, 707
AvaII	GGWCC	1 cut(s)	894
BanI	GGYRCC	2 cut(s)	353, 405
BauI	CACGAG	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	77, 324
BccI	CCATC	3 cut(s)	186, 242, 594
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	4 cut(s)	51, 85, 812, 846
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	615, 722
BfaI	CTAG	4 cut(s)	86, 524, 603, 764
BfmI	CTRYAG	2 cut(s)	70, 153
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	2 cut(s)	159, 539
BisI	GCNGC	4 cut(s)	91, 295, 313, 815
BlsI	GCNGC	4 cut(s)	92, 296, 314, 816
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	894
BmeT110I	CYCGRG	2 cut(s)	60, 707
BmgT120I	GGNCC	1 cut(s)	894
BmiI	GGNNCC	2 cut(s)	355, 407
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	253, 886
BmtI	GCTAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	589
BsaHI	GRCGYC	2 cut(s)	128, 406
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	77, 324
Bsh1236I	CGCG	3 cut(s)	297, 475, 645
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	2 cut(s)	353, 405
BshVI	ATCGAT	1 cut(s)	589
BsiHKCI	CYCGRG	2 cut(s)	60, 707
BsiSI	CCGG	2 cut(s)	37, 113
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	615, 722
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	60, 707
Bsp143I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BspACI	CCGC	5 cut(s)	295, 475, 645, 814, 892
BspANI	GGCC	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	589
BspFNI	CGCG	3 cut(s)	297, 475, 645
BspLI	GGNNCC	2 cut(s)	355, 407
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	3, 114, 267
BspT107I	GGYRCC	2 cut(s)	353, 405
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BssNI	GRCGYC	2 cut(s)	128, 406
BssSI	CACGAG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	450
BstACI	GRCGYC	2 cut(s)	128, 406
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	176, 604
BstDSI	CCRYGG	1 cut(s)	595
BstFNI	CGCG	3 cut(s)	297, 475, 645
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	4 cut(s)	348, 408, 475, 645
BstKTI	GATC	7 cut(s)	11, 109, 162, 262, 301, 310, 542
BstMAI	GTCTC	2 cut(s)	615, 722
BstMBI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	898
BstNSI	RCATGY	2 cut(s)	244, 877
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	70, 153
BstUI	CGCG	3 cut(s)	297, 475, 645
BstV1I	GCAGC	2 cut(s)	77, 324
BstX2I	RGATCY	4 cut(s)	8, 106, 159, 539
BstYI	RGATCY	4 cut(s)	8, 106, 159, 539
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 504
Cac8I	GCNNGC	2 cut(s)	176, 604
CfoI	GCGC	4 cut(s)	348, 408, 475, 645
Cfr13I	GGNCC	1 cut(s)	894
ClaI	ATCGAT	1 cut(s)	589
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	373, 616, 849
CviAII	CATG	7 cut(s)	241, 280, 393, 640, 874, 889, 898
CviQI	GTAC	3 cut(s)	373, 616, 849
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
DpnII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	894
Eco88I	CYCGRG	2 cut(s)	60, 707
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	246, 879
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
FaeI	CATG	7 cut(s)	244, 283, 396, 643, 877, 892, 901
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	7 cut(s)	240, 279, 392, 639, 873, 888, 897
FauNDI	CATATG	2 cut(s)	16, 288
Fnu4HI	GCNGC	4 cut(s)	91, 295, 313, 815
Fsp4HI	GCNGC	4 cut(s)	91, 295, 313, 815
FspBI	CTAG	4 cut(s)	86, 524, 603, 764
GlaI	GCGC	4 cut(s)	347, 407, 474, 644
GluI	GCNGC	4 cut(s)	91, 295, 313, 815
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	2 cut(s)	37, 113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	348, 408, 475, 645
Hin1I	GRCGYC	2 cut(s)	128, 406
Hin1II	CATG	7 cut(s)	244, 283, 396, 643, 877, 892, 901
Hin6I	GCGC	4 cut(s)	346, 406, 473, 643
HinP1I	GCGC	4 cut(s)	346, 406, 473, 643
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	65, 399, 591, 710
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	37, 113
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	2 cut(s)	214, 650
Hpy188I	TCNGA	4 cut(s)	55, 259, 264, 413
Hpy188III	TCNNGA	5 cut(s)	524, 669, 725, 764, 821
Hpy8I	GTNNAC	2 cut(s)	214, 650
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	2 cut(s)	339, 930
HpyCH4V	TGCA	5 cut(s)	72, 186, 207, 244, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	898
HpySE526I	ACGT	2 cut(s)	339, 930
Hsp92I	GRCGYC	2 cut(s)	128, 406
Hsp92II	CATG	7 cut(s)	244, 283, 396, 643, 877, 892, 901
HspAI	GCGC	4 cut(s)	346, 406, 473, 643
KasI	GGCGCC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	2 cut(s)	77, 324
LweI	GCATC	2 cut(s)	253, 886
MaeI	CTAG	4 cut(s)	86, 524, 603, 764
MaeII	ACGT	2 cut(s)	339, 930
MalI	GATC	7 cut(s)	10, 108, 161, 261, 300, 309, 541
MboI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
MboII	GAAGA	5 cut(s)	18, 549, 782, 792, 795
MflI	RGATCY	4 cut(s)	8, 106, 159, 539
MluCI	AATT	6 cut(s)	169, 467, 692, 798, 809, 862
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	2 cut(s)	246, 879
MroXI	GAANNNNTTC	1 cut(s)	863
MseI	TTAA	4 cut(s)	213, 369, 479, 917
MslI	CAYNNNNRTG	2 cut(s)	239, 497
MspA1I	CMGCKG	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	37, 113
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	3 cut(s)	297, 475, 645
MwoI	GCNNNNNNNGC	1 cut(s)	898
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 288
NdeII	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	7 cut(s)	244, 283, 396, 643, 877, 892, 901
NlaIV	GGNNCC	2 cut(s)	355, 407
NsiI	ATGCAT	2 cut(s)	246, 879
NspI	RCATGY	2 cut(s)	244, 877
PaeR7I	CTCGAG	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	3 cut(s)	65, 399, 591
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	92, 296, 314, 816
PleI	GAGTC	1 cut(s)	718
PluTI	GGCGCC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	718
Psp1406I	AACGTT	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	355, 407
PspPI	GGNCC	1 cut(s)	894
PspXI	VCTCGAGB	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	4 cut(s)	8, 106, 159, 539
PvuII	CAGCTG	1 cut(s)	315
RsaI	GTAC	3 cut(s)	374, 617, 850
RsaNI	GTAC	3 cut(s)	373, 616, 849
RseI	CAYNNNNRTG	2 cut(s)	239, 497
SaqAI	TTAA	4 cut(s)	213, 369, 479, 917
SatI	GCNGC	4 cut(s)	91, 295, 313, 815
Sau3AI	GATC	7 cut(s)	8, 106, 159, 259, 298, 307, 539
Sau96I	GGNCC	1 cut(s)	894
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	113
SfaNI	GCATC	2 cut(s)	253, 886
SfcI	CTRYAG	2 cut(s)	70, 153
SfoI	GGCGCC	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	894
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	239, 497
SmlI	CTYRAG	3 cut(s)	368, 707, 725
SmoI	CTYRAG	3 cut(s)	368, 707, 725
Sse9I	AATT	6 cut(s)	169, 467, 692, 798, 809, 862
SsiI	CCGC	5 cut(s)	295, 475, 645, 814, 892
SspDI	GGCGCC	1 cut(s)	405
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	4 cut(s)	86, 524, 603, 764
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	2 cut(s)	342, 933
TaqI	TCGA	5 cut(s)	237, 330, 464, 589, 708
TasI	AATT	6 cut(s)	169, 467, 692, 798, 809, 862
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	297, 817
TfiI	GAWTC	3 cut(s)	65, 399, 591
Tru1I	TTAA	4 cut(s)	213, 369, 479, 917
Tru9I	TTAA	4 cut(s)	213, 369, 479, 917
TscAI	CASTG	2 cut(s)	38, 504
TseI	GCWGC	2 cut(s)	90, 312
TspDTI	ATGAA	3 cut(s)	33, 381, 705
TspGWI	ACGGA	2 cut(s)	584, 633
TspRI	CASTG	2 cut(s)	38, 504
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	894
XapI	RAATTY	2 cut(s)	467, 862
XbaI	TCTAGA	2 cut(s)	523, 763
XceI	RCATGY	2 cut(s)	244, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	4 cut(s)	86, 524, 603, 764
Zsp2I	ATGCAT	2 cut(s)	246, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.