Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003989.1

Orthogroup ID

OG0014855

Physical Location & Seq

Genomic Coordinates Forward (+)

11161 .. 11946

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003989.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgggaagatcctcatataaaaccacccaacactgtcggaagcgaagtttctcggacacccaagaatactgcggagagcaaaagcgagcctgccgaaactggttggatctcccggaggacctaacggcgtcaatattttcaaggttgaaagccacagagatcttgcatgattgtcagcttgtgtgcaagagatggttaaaaatctgcaaggttaaccctctggtatggcgaaccatcgacatggatcatcaccttatggatgatttcatctacggcagcatggagcatatgtgccgcgacctcattgatcgtagctgtttggctccaaaaccagctggtgtgcaaacactctcttttgggcgagtagttgcgcaggcgtaccagcaccgcggggtgcagtcgttgggactaagcagagcaatcactgggaagttgagagaagcacgggtttgccaaagcgtgactctagcttcgctgggttgcgagggcgttacccttgcttcgctggaagtaacagtggcggttgtgctcgcagtcggctcctggggagacttggactggaaatacggtcgccgggttgatctggtgaggctgacagtcggctcgcgaggagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

205

Amino Acids

23.09

Weight (kDa)

8.96

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014855)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015741 RchiOBHm_Chr5g0015821 RchiOBHm_Chr5g0016451
rosa_laevigata	RLG00000032224
rosa_multiflora	Rmu_sc0001235.1_g000027 Rmu_sc0003989.1_g000003 Rmu_sc0011313.1_g000004 Rmu_sc0030879.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060440
rosa_rugosa	Rorug05G0032500
rosa_samantha	Rh5AG126000 Rh5CG132300 Rh5CG133100 Rh5CG137300 Rh5DG121000 Rh5DG124700
rosa_wichuraiana	Rw5G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
AccII	CGCG	3 cut(s)	297, 390, 607
AciI	CCGC	5 cut(s)	72, 295, 388, 390, 521
AclWI	GGATC	3 cut(s)	3, 114, 252
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	141, 148
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	4 cut(s)	178, 315, 335, 470
AluI	AGCT	4 cut(s)	178, 315, 335, 470
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	543, 606
AlwI	GGATC	3 cut(s)	3, 114, 252
ApeKI	GCWGC	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	2 cut(s)	113, 575
AsuHPI	GGTGA	2 cut(s)	242, 598
AvaII	GGWCC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	2 cut(s)	186, 242
BceAI	ACGGC	2 cut(s)	141, 289
BciT130I	CCWGG	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	113, 575
BcoDI	GTCTC	2 cut(s)	543, 606
BfaI	CTAG	2 cut(s)	467, 616
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	2 cut(s)	277, 295
BlsI	GCNGC	2 cut(s)	278, 296
Bme1390I	CCNGG	3 cut(s)	113, 544, 575
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	324, 541
BmrFI	CCNGG	3 cut(s)	113, 544, 575
BmrI	ACTGGG	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	113, 575
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	388, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse1I	ACTGG	3 cut(s)	104, 430, 563
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	388, 543
BseGI	GGATG	1 cut(s)	265
BseNI	ACTGG	3 cut(s)	104, 430, 563
BseXI	GCAGC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	3 cut(s)	297, 390, 607
Bsh1285I	CGRYCG	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	113, 574
BslFI	GGGAC	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	543, 606
BsmFI	GGGAC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
Bsp68I	TCGCGA	1 cut(s)	607
BspACI	CCGC	5 cut(s)	72, 295, 388, 390, 521
BspFNI	CGCG	3 cut(s)	297, 390, 607
BspLI	GGNNCC	2 cut(s)	324, 541
BspPI	GGATC	3 cut(s)	3, 114, 252
BsrI	ACTGG	3 cut(s)	104, 430, 563
BssECI	CCNNGG	2 cut(s)	388, 543
BssMI	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	35, 517, 569, 598
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	5 cut(s)	87, 91, 375, 531, 605
BstDEI	CTNAG	1 cut(s)	410
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	3 cut(s)	297, 390, 607
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	6 cut(s)	11, 109, 162, 247, 310, 583
BstMAI	GTCTC	2 cut(s)	543, 606
BstMBI	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
BstMCI	CGRYCG	1 cut(s)	571
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	111, 542, 573
BstUI	CGCG	3 cut(s)	297, 390, 607
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	3 cut(s)	8, 106, 159
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	3 cut(s)	8, 106, 159
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	31, 423, 522
BtuMI	TCGCGA	1 cut(s)	607
Cac8I	GCNNGC	5 cut(s)	87, 91, 375, 531, 605
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	118
Cfr42I	CCGCGG	1 cut(s)	391
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	167, 241, 280
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	6 cut(s)	10, 108, 161, 246, 309, 582
DpnII	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	542
FaeI	CATG	3 cut(s)	170, 244, 283
FaiI	YATR	9 cut(s)	16, 18, 168, 226, 242, 257, 281, 288, 290
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	166, 240, 279
FauI	CCCGC	1 cut(s)	383
FauNDI	CATATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	277, 295
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	277, 295
FspBI	CTAG	2 cut(s)	467, 616
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	2 cut(s)	277, 295
GsaI	CCCAGC	1 cut(s)	479
HapII	CCGG	2 cut(s)	113, 574
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	170, 244, 283
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	113, 574
HphI	GGTGA	2 cut(s)	242, 598
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	39, 55
Hpy188III	TCNNGA	1 cut(s)	606
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	4 cut(s)	35, 517, 569, 598
HpyCH4V	TGCA	5 cut(s)	166, 186, 207, 343, 397
HpyF3I	CTNAG	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	170, 244, 283
HspAI	GCGC	1 cut(s)	371
KspAI	GTTAAC	1 cut(s)	214
KspI	CCGCGG	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
LmnI	GCTCC	3 cut(s)	283, 328, 545
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	467, 616
MaeIII	GTNAC	3 cut(s)	460, 490, 511
MalI	GATC	6 cut(s)	10, 108, 161, 246, 309, 582
MboI	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	3 cut(s)	8, 106, 159
MhlI	GDGCHC	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	2 cut(s)	17, 84
MnlI	CCTC	7 cut(s)	22, 109, 228, 311, 478, 582, 602
MseI	TTAA	2 cut(s)	197, 213
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	335, 390
MspI	CCGG	2 cut(s)	113, 574
MspR9I	CCNGG	3 cut(s)	113, 544, 575
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	3 cut(s)	297, 390, 607
NciI	CCSGG	2 cut(s)	113, 575
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
NlaIII	CATG	3 cut(s)	170, 244, 283
NlaIV	GGNNCC	2 cut(s)	324, 541
NmuCI	GTSAC	1 cut(s)	460
NruI	TCGCGA	1 cut(s)	607
NsbI	TGCGCA	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	278, 296
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	324, 541
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	3 cut(s)	8, 106, 159
PvuII	CAGCTG	1 cut(s)	335
RruI	TCGCGA	1 cut(s)	607
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	239
SacII	CCGCGG	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	197, 213
SatI	GCNGC	2 cut(s)	277, 295
Sau3AI	GATC	6 cut(s)	8, 106, 159, 244, 307, 580
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	3 cut(s)	113, 544, 575
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	9 cut(s)	123, 146, 180, 213, 255, 303, 317, 337, 472
Sfr303I	CCGCGG	1 cut(s)	391
SgrBI	CCGCGG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	239
SsiI	CCGC	5 cut(s)	72, 295, 388, 390, 521
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	2 cut(s)	467, 616
StyD4I	CCNGG	3 cut(s)	111, 542, 573
TaaI	ACNGT	4 cut(s)	35, 517, 569, 598
TaqI	TCGA	1 cut(s)	237
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	197, 213
Tru9I	TTAA	2 cut(s)	197, 213
TscAI	CASTG	3 cut(s)	38, 430, 522
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	38, 430, 522
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	2 cut(s)	467, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.