Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009874

Physical Location & Seq

Genomic Coordinates Forward (+)

23783266 .. 23783859

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAATTCTCTACAAGAGCTGTGGAACTAACGACTCTATTAGAAAGTAGAATTACCAACTTTTACACGAATTTTGAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCAGTGTGAAAGGAATAGCGTTGAATCTTAAGAATGAGAATATAGGGATTGTTGTCTTTGGTAGTGATTCCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGAATGTTCCTGCGGGAAAGGCTCTGCTAGGGCGTGTGGTCGACGGGTTGGGAGTTCCTATTGATGGAAGAGGAGCTCTAAGCGATCATGAGCAAAGACGTGTCGAAGTGAAAGCCCCTGGCATTATTAAATGTAAATATGTGCACGAGCTTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACAAGAACTTATAATAGGGGACCGACAAACTGGAAAAACGGCTATTGCTATCGATACCATATTAAACCAAAAGCAACTGAACTCAAGGGCCACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

197

Amino Acids

21.15

Weight (kDa)

7.83

Isoelectric Point (pI)

19.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab_N	PF02874	27 - 94	5.1e-20	ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab	PF00006	151 - 189	2.2e-09	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07698 ATMG01190
fragaria_vesca	FvH4_2g28400
pyrus_communis	pycom12401g00040 pycom461g00030 pycom461g00350
rosa_chinensis	RchiOBHm_Chr5g0029951 RchiOBHm_Chr5g0029961 RchiOBHm_Chr5g0029971 RchiOBHm_MTg0498251
rosa_laevigata	RLG00000000358 RLG00000000375 RLG00000000391 RLG00000033204
rosa_roxburghii	Rroxscaffold_2G00119400
rosa_rugosa	RorugMtG0001000.1
rosa_samantha	Rh5BG208100 Rh5CG231600 Rh5DG212300 Rh5DG212400
rosa_wichuraiana	Rw0G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	3 cut(s)	246, 302, 461
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	5, 70, 167
AcvI	CACGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	2 cut(s)	124, 388
AgsI	TTSAA	5 cut(s)	77, 139, 149, 167, 199
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	406, 471
AluBI	AGCT	4 cut(s)	20, 152, 365, 439
AluI	AGCT	4 cut(s)	20, 152, 365, 439
Alw21I	GWGCWC	2 cut(s)	367, 435
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	484, 582
ApaLI	GTGCAC	1 cut(s)	431
ApoI	RAATTY	3 cut(s)	5, 70, 167
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	514, 582
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	434
BbrPI	CACGTG	1 cut(s)	125
Bbv12I	GWGCWC	2 cut(s)	367, 435
BccI	CCATC	2 cut(s)	107, 347
BceAI	ACGGC	2 cut(s)	471, 549
BciT130I	CCWGG	2 cut(s)	408, 473
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	408, 473
Bme18I	GGWCC	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	514, 582
BmiI	GGNNCC	2 cut(s)	477, 515
BmrFI	CCNGG	2 cut(s)	408, 473
BpuEI	CTTGAG	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	406, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	283, 529
BseBI	CCWGG	2 cut(s)	408, 473
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	406, 487
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	283, 529
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	486, 584
BshVI	ATCGAT	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	367, 435
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	486, 584
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	367, 435
Bsp143I	GATC	4 cut(s)	87, 262, 281, 373
BspACI	CCGC	3 cut(s)	246, 302, 461
BspANI	GGCC	2 cut(s)	486, 584
BspCNI	CTCAG	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	477, 515
BspPI	GGATC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	283, 529
BssECI	CCNNGG	2 cut(s)	406, 487
BssMI	GATC	4 cut(s)	87, 262, 281, 373
BssSI	CACGAG	1 cut(s)	434
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	408, 473
Bst6I	CTCTTC	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	103, 368, 591
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	4 cut(s)	90, 265, 284, 376
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	87, 262, 281, 373
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	408, 473
BstSCI	CCNGG	2 cut(s)	406, 471
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	262, 281
BstYI	RGATCY	2 cut(s)	262, 281
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	486, 584
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	487
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	184, 276
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	514, 582
ClaI	ATCGAT	1 cut(s)	546
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	103, 368, 591
DpnI	GATC	4 cut(s)	89, 264, 283, 375
DpnII	GATC	4 cut(s)	87, 262, 281, 373
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	406, 471
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	1 cut(s)	380
FaiI	YATR	8 cut(s)	132, 218, 378, 429, 443, 482, 506, 554
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	486, 584
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	2 cut(s)	331, 494
HindII	GTYRAC	2 cut(s)	331, 494
HinfI	GANTC	4 cut(s)	34, 145, 199, 242
Hpy166II	GTNNAC	3 cut(s)	331, 433, 494
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	3 cut(s)	331, 433, 494
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	124, 388
HpyCH4V	TGCA	3 cut(s)	122, 433, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	103, 368, 591
HpySE526I	ACGT	2 cut(s)	124, 388
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	87, 262, 281, 373
LmnI	GCTCC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	124, 388
MalI	GATC	4 cut(s)	89, 264, 283, 375
MboI	GATC	4 cut(s)	87, 262, 281, 373
MboII	GAAGA	1 cut(s)	369
MflI	RGATCY	2 cut(s)	262, 281
MhlI	GDGCHC	2 cut(s)	367, 435
MluCI	AATT	4 cut(s)	5, 51, 70, 167
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	1 cut(s)	353
MseI	TTAA	5 cut(s)	204, 252, 417, 455, 557
MspCI	CTTAAG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	408, 473
MvaI	CCWGG	2 cut(s)	408, 473
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	4 cut(s)	87, 262, 281, 373
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	477, 515
PagI	TCATGA	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	145, 199, 242
PleI	GAGTC	1 cut(s)	28
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	406, 471
PspCI	CACGTG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	406, 471
PspN4I	GGNNCC	2 cut(s)	477, 515
PspPI	GGNCC	2 cut(s)	514, 582
PsuI	RGATCY	2 cut(s)	262, 281
SacI	GAGCTC	1 cut(s)	367
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	5 cut(s)	204, 252, 417, 455, 557
Sau3AI	GATC	4 cut(s)	87, 262, 281, 373
Sau96I	GGNCC	2 cut(s)	514, 582
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	408, 473
SduI	GDGCHC	2 cut(s)	367, 435
SetI	ASST	7 cut(s)	22, 127, 154, 367, 391, 441, 590
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	203, 577
SmoI	CTYRAG	2 cut(s)	203, 577
Sse9I	AATT	4 cut(s)	5, 51, 70, 167
SsiI	CCGC	3 cut(s)	246, 302, 461
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	406, 471
TaiI	ACGT	2 cut(s)	127, 391
TaqI	TCGA	4 cut(s)	94, 330, 393, 546
TaqII	GACCGA	2 cut(s)	80, 531
TasI	AATT	4 cut(s)	5, 51, 70, 167
TfiI	GAWTC	3 cut(s)	145, 199, 242
Tru1I	TTAA	5 cut(s)	204, 252, 417, 455, 557
Tru9I	TTAA	5 cut(s)	204, 252, 417, 455, 557
TscAI	CASTG	2 cut(s)	184, 283
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	184, 283
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	3 cut(s)	5, 70, 167
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.