Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009874

Physical Location & Seq

Genomic Coordinates Forward (+)

24464924 .. 24466455

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAATTCTCTACAAGAGCTGCGGAACTAACGACTCTATTAGAAAGTAGAATTACCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTTCACGTGTTTATGGATTGAATGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTAAGAATGAGAATATAGGGACTGTTGTCTTTGGTAGTGATTCCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGAATGTTCCTGCGGGAAAGGCTCTGCTAGGGCCAATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGGGGATGCTATGGAATATTCCATTCTTGTAGTAGCCACCGCTTCGGATCCGGCTCCTCTGCAATTTCTGGCCCCATATTCTGAGTGTGCCATGGGGGAATATTTTCGTGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTGCCCGTCATTGAGACACAAGCTGGAGATGTATCGACCTATATTCTAACCAATGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTACTATTAACGTCGGCTTATCTGTCAGTCGCTTCGGGTCTGCCACTCAGTTGAAAATTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGACGCTGCGACTCAGGCATTACTTAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTCAATGGATTATATGATCGAATGCCACTAGACAGAATCTCTCAATATGAGAGAGCCATTCCAAATAGTATAAAACCAGAATTACTACAATCCCTTTTAGAAAAGGGTGGGTTAACTAACAAAAGAAAGATGGAACCAGATGCATTCTTAAAAGAAAGCGCTTTGCCTTTCCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

376

Amino Acids

40.74

Weight (kDa)

5.76

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab_N	PF02874	27 - 94	4.3e-19	ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab	PF00006	105 - 179	8.5e-18	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab	PF00006	176 - 240	6.3e-15	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C	PF00306	247 - 360	3.8e-39	ATP synthase alpha/beta chain, C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07698 ATMG01190
fragaria_vesca	FvH4_2g28400
pyrus_communis	pycom12401g00040 pycom461g00030 pycom461g00350
rosa_chinensis	RchiOBHm_Chr5g0029951 RchiOBHm_Chr5g0029961 RchiOBHm_Chr5g0029971 RchiOBHm_MTg0498251
rosa_laevigata	RLG00000000358 RLG00000000375 RLG00000000391 RLG00000033204
rosa_roxburghii	Rroxscaffold_2G00119400
rosa_rugosa	RorugMtG0001000.1
rosa_samantha	Rh5BG208100 Rh5CG231600 Rh5DG212300 Rh5DG212400
rosa_wichuraiana	Rw0G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	548
AccII	CGCG	2 cut(s)	681, 798
AclWI	GGATC	3 cut(s)	289, 416, 429
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	5 cut(s)	5, 70, 167, 363, 927
AcvI	CACGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	885
AfeI	AGCGCT	1 cut(s)	1108
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	9 cut(s)	77, 139, 149, 167, 199, 362, 745, 774, 920
AluBI	AGCT	6 cut(s)	20, 152, 564, 596, 670, 947
AluI	AGCT	6 cut(s)	20, 152, 564, 596, 670, 947
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	106, 581
AlwI	GGATC	3 cut(s)	289, 416, 429
Aor51HI	AGCGCT	1 cut(s)	1108
AoxI	GGCC	3 cut(s)	320, 444, 804
ApeKI	GCWGC	3 cut(s)	20, 839, 944
ApoI	RAATTY	5 cut(s)	5, 70, 167, 363, 927
AseI	ATTAAT	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	276, 1109
AspS9I	GGNCC	3 cut(s)	320, 445, 544
AvaII	GGWCC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	672
BbrPI	CACGTG	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	7, 826, 956
BccI	CCATC	3 cut(s)	107, 638, 1072
BcoDI	GTCTC	2 cut(s)	106, 581
BfaI	CTAG	2 cut(s)	317, 977
BfoI	RGCGCY	1 cut(s)	1110
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	5 cut(s)	21, 531, 807, 840, 945
BlsI	GCNGC	5 cut(s)	22, 532, 808, 841, 946
BmcAI	AGTACT	1 cut(s)	885
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	320, 445, 544
BmiI	GGNNCC	4 cut(s)	423, 429, 447, 1083
BmsI	GCATC	2 cut(s)	370, 1078
BoxI	GACNNNNGTC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse1I	ACTGG	2 cut(s)	283, 783
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	88, 385
BseMII	CTCAG	4 cut(s)	117, 447, 752, 860
BseNI	ACTGG	2 cut(s)	283, 783
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	3 cut(s)	7, 826, 956
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	2 cut(s)	681, 798
Bsh1285I	CGRYCG	2 cut(s)	94, 542
BshFI	GGCC	3 cut(s)	322, 446, 806
BsiEI	CGRYCG	2 cut(s)	94, 542
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	106, 581
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	3 cut(s)	498, 975, 1091
BsnI	GGCC	3 cut(s)	322, 446, 806
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
Bsp19I	CCATGG	1 cut(s)	465
Bsp68I	TCGCGA	1 cut(s)	798
BspANI	GGCC	3 cut(s)	322, 446, 806
BspCNI	CTCAG	4 cut(s)	116, 448, 751, 859
BspFNI	CGCG	2 cut(s)	681, 798
BspLI	GGNNCC	4 cut(s)	423, 429, 447, 1083
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	289, 416, 429
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	283, 783
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	226, 346
BstAFI	CTTAAG	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	175, 498
BstDEI	CTNAG	4 cut(s)	103, 456, 738, 846
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	88, 385
BstFNI	CGCG	2 cut(s)	681, 798
BstH2I	RGCGCY	1 cut(s)	1110
BstHHI	GCGC	2 cut(s)	276, 1109
BstKTI	GATC	8 cut(s)	90, 265, 284, 424, 520, 542, 633, 967
BstMAI	GTCTC	2 cut(s)	106, 581
BstMBI	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
BstMCI	CGRYCG	2 cut(s)	94, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 812, 848
BstPAI	GACNNNNGTC	1 cut(s)	227
BstUI	CGCG	2 cut(s)	681, 798
BstV1I	GCAGC	3 cut(s)	7, 826, 956
BstX2I	RGATCY	3 cut(s)	262, 281, 421
BstYI	RGATCY	3 cut(s)	262, 281, 421
BsuRI	GGCC	3 cut(s)	322, 446, 806
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	88, 385
BtsIMutI	CAGTG	1 cut(s)	276
BtuMI	TCGCGA	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	175, 498
CfoI	GCGC	2 cut(s)	276, 1109
Cfr13I	GGNCC	3 cut(s)	320, 445, 544
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	1 cut(s)	884
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	1 cut(s)	884
DdeI	CTNAG	4 cut(s)	103, 456, 738, 846
DpnI	GATC	8 cut(s)	89, 264, 283, 423, 519, 541, 632, 966
DpnII	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
EaeI	YGGCCR	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	544
Eco47III	AGCGCT	1 cut(s)	1108
Eco53kI	GAGCTC	1 cut(s)	670
Eco72I	CACGTG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	1093
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	469
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	465
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	21, 531, 807, 840, 945
FokI	GGATG	2 cut(s)	95, 392
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	5 cut(s)	21, 531, 807, 840, 945
FspBI	CTAG	2 cut(s)	317, 977
GlaI	GCGC	2 cut(s)	275, 1108
GluI	GCNGC	5 cut(s)	21, 531, 807, 840, 945
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	1110
HaeIII	GGCC	3 cut(s)	322, 446, 806
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	2 cut(s)	276, 1109
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	2 cut(s)	274, 1107
HinP1I	GCGC	2 cut(s)	274, 1107
HincII	GTYRAC	1 cut(s)	1062
HindII	GTYRAC	1 cut(s)	1062
HinfI	GANTC	6 cut(s)	34, 145, 199, 242, 844, 984
HpaI	GTTAAC	1 cut(s)	1062
HpaII	CCGG	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	1062
Hpy188I	TCNGA	6 cut(s)	373, 421, 457, 544, 661, 829
Hpy188III	TCNNGA	2 cut(s)	482, 797
Hpy8I	GTNNAC	1 cut(s)	1062
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	2 cut(s)	251, 368
HpyCH4III	ACNGT	2 cut(s)	226, 346
HpyCH4IV	ACGT	2 cut(s)	124, 702
HpyCH4V	TGCA	7 cut(s)	436, 496, 557, 869, 905, 944, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 812, 848
HpyF3I	CTNAG	4 cut(s)	103, 456, 738, 846
HpySE526I	ACGT	2 cut(s)	124, 702
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	2 cut(s)	274, 1107
KspAI	GTTAAC	1 cut(s)	1062
Kzo9I	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	3 cut(s)	7, 826, 956
LweI	GCATC	2 cut(s)	370, 1078
MaeI	CTAG	2 cut(s)	317, 977
MaeII	ACGT	2 cut(s)	124, 702
MalI	GATC	8 cut(s)	89, 264, 283, 423, 519, 541, 632, 966
MboI	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
MfeI	CAATTG	2 cut(s)	324, 915
MflI	RGATCY	3 cut(s)	262, 281, 421
MhlI	GDGCHC	1 cut(s)	672
MlyI	GAGTC	2 cut(s)	28, 838
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	441, 857
Mph1103I	ATGCAT	1 cut(s)	1093
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	8 cut(s)	204, 252, 503, 522, 699, 858, 1061, 1097
MspA1I	CMGCKG	2 cut(s)	177, 947
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	425
MunI	CAATTG	2 cut(s)	324, 915
Mva1269I	GAATGC	3 cut(s)	498, 975, 1091
MvnI	CGCG	2 cut(s)	681, 798
MwoI	GCNNNNNNNGC	3 cut(s)	308, 812, 848
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	4 cut(s)	423, 429, 447, 1083
NruI	TCGCGA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	1093
PctI	GAATGC	3 cut(s)	498, 975, 1091
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	145, 199, 242, 984
PkrI	GCNGC	5 cut(s)	22, 532, 808, 841, 946
Ple19I	CGATCG	1 cut(s)	542
PleI	GAGTC	2 cut(s)	28, 838
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
PpsI	GAGTC	2 cut(s)	28, 838
Ppu21I	YACGTR	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	672
PspCI	CACGTG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	423, 429, 447, 1083
PspPI	GGNCC	3 cut(s)	320, 445, 544
PsuI	RGATCY	3 cut(s)	262, 281, 421
PvuI	CGATCG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	947
RruI	TCGCGA	1 cut(s)	798
RsaI	GTAC	1 cut(s)	885
RsaNI	GTAC	1 cut(s)	884
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	8 cut(s)	204, 252, 503, 522, 699, 858, 1061, 1097
SatI	GCNGC	5 cut(s)	21, 531, 807, 840, 945
Sau3AI	GATC	8 cut(s)	87, 262, 281, 421, 517, 539, 630, 964
Sau96I	GGNCC	3 cut(s)	320, 445, 544
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	2 cut(s)	28, 838
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	2 cut(s)	370, 1078
SinI	GGWCC	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SspI	AATATT	2 cut(s)	392, 476
SspMI	CTAG	2 cut(s)	317, 977
SstI	GAGCTC	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	226, 346
TaiI	ACGT	2 cut(s)	127, 705
TaqI	TCGA	3 cut(s)	94, 608, 967
TaqII	GACCGA	1 cut(s)	80
TatI	WGTACW	1 cut(s)	883
TauI	GCSGC	2 cut(s)	533, 809
TfiI	GAWTC	4 cut(s)	145, 199, 242, 984
Tru1I	TTAA	8 cut(s)	204, 252, 503, 522, 699, 858, 1061, 1097
Tru9I	TTAA	8 cut(s)	204, 252, 503, 522, 699, 858, 1061, 1097
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	3 cut(s)	20, 839, 944
TspDTI	ATGAA	2 cut(s)	17, 767
TspRI	CASTG	1 cut(s)	283
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	503
XapI	RAATTY	5 cut(s)	5, 70, 167, 363, 927
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	317, 977
ZrmI	AGTACT	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.