RLG00000000391

ATP synthase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009874
Physical Location & Seq
Reverse (-)
804616 .. 806867
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000391

Sequence Viewer

Length: 1134 bp
ATGGAATTCTCTACAAGAGCTGCGGAACTAACGACTCTATTAGAAAGTAGAATTACCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTCTGCTAGGGCGTGTGGTCGACGGGTTGGGAGTTCCTATTGATGGAAGAGGAGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGCATTATTGAACGTAAATCTGTGCACGAGGCGGTAGATAGCCTGGTTCCTATAGGCCGTGCAATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGGGAATGCTATGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCGGCTCCTCTGCAATTTATGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCGAAAGAGCCGCCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTGCCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAATTATGAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGACGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAATTCCGAACTCTTAATTGACTACCGGTATGCTCAACGGCCTAGGAGCGATTGGCCGACAGCCATAAGACCTGACCGCTATCAGACTGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

378

Amino Acids

41.09

Weight (kDa)

5.57

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 27 - 94 1.6e-20 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 149 - 228 6.9e-20 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab PF00006 238 - 293 1.8e-16 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 707, 859
AccB7I CCANNNNNTGG 1 cut(s) 602
AccBSI CCGCTC 1 cut(s) 896
AccI GTMKAC 1 cut(s) 330
AccII CGCG 4 cut(s) 630, 840, 882, 956
AclWI GGATC 3 cut(s) 289, 563, 576
AcoI YGGCCR 2 cut(s) 962, 1091
AcsI RAATTY 5 cut(s) 5, 70, 167, 510, 1039
AcvI CACGTG 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 353, 602
AflIII ACRYGT 2 cut(s) 124, 388
AgeI ACCGGT 1 cut(s) 1062
AjiI CACGTC 1 cut(s) 389
AjnI CCWGG 2 cut(s) 406, 450
AluBI AGCT 6 cut(s) 20, 152, 365, 723, 755, 829
AluI AGCT 6 cut(s) 20, 152, 365, 723, 755, 829
Alw21I GWGCWC 3 cut(s) 367, 435, 831
Alw26I GTCTC 2 cut(s) 106, 753
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 3 cut(s) 289, 563, 576
AoxI GGCC 6 cut(s) 463, 591, 768, 962, 1076, 1091
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 20, 554, 997
ApoI RAATTY 5 cut(s) 5, 70, 167, 510, 1039
AseI ATTAAT 1 cut(s) 650
AsiGI ACCGGT 1 cut(s) 1062
AspA2I CCTAGG 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 592, 703
AvaII GGWCC 1 cut(s) 703
AvrII CCTAGG 1 cut(s) 1079
BaeGI GKGCMC 1 cut(s) 435
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 2 cut(s) 367, 831
BauI CACGAG 2 cut(s) 377, 434
BbrPI CACGTG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 3 cut(s) 367, 435, 831
BbvI GCAGC 3 cut(s) 7, 566, 984
BccI CCATC 3 cut(s) 107, 347, 797
BceAI ACGGC 2 cut(s) 450, 1091
BciT130I CCWGG 2 cut(s) 408, 452
BcoDI GTCTC 2 cut(s) 106, 753
BfaI CTAG 2 cut(s) 317, 1080
BfmI CTRYAG 1 cut(s) 459
BfuAI ACCTGC 2 cut(s) 707, 859
BglII AGATCT 1 cut(s) 262
BisI GCNGC 6 cut(s) 21, 555, 689, 894, 965, 998
BlnI CCTAGG 1 cut(s) 1079
BlsI GCNGC 6 cut(s) 22, 556, 690, 895, 966, 999
Bme1390I CCNGG 2 cut(s) 408, 452
Bme18I GGWCC 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 592, 703
BmiI GGNNCC 4 cut(s) 456, 570, 576, 594
BmrFI CCNGG 2 cut(s) 408, 452
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 406, 612, 1079
BsaWI WCCGGW 1 cut(s) 1062
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 602
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 2 cut(s) 283, 941
BseBI CCWGG 2 cut(s) 408, 452
BseDI CCNNGG 3 cut(s) 406, 612, 1079
BseGI GGATG 2 cut(s) 88, 298
BseLI CCNNNNNNNGG 2 cut(s) 353, 602
BseMII CTCAG 4 cut(s) 117, 911, 1018, 1116
BseNI ACTGG 2 cut(s) 283, 941
BseRI GAGGAG 2 cut(s) 375, 567
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 3 cut(s) 7, 566, 984
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 4 cut(s) 630, 840, 882, 956
Bsh1285I CGRYCG 2 cut(s) 94, 701
BshFI GGCC 6 cut(s) 465, 593, 770, 964, 1078, 1093
BshTI ACCGGT 1 cut(s) 1062
BsiEI CGRYCG 2 cut(s) 94, 701
BsiHKAI GWGCWC 3 cut(s) 367, 435, 831
BsiSI CCGG 2 cut(s) 572, 1063
BslI CCNNNNNNNGG 2 cut(s) 353, 602
BsmAI GTCTC 2 cut(s) 106, 753
BsmBI CGTCTC 1 cut(s) 753
BsmI GAATGC 2 cut(s) 532, 645
BsnI GGCC 6 cut(s) 465, 593, 770, 964, 1078, 1093
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 367, 435, 831
Bsp143I GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
Bsp19I CCATGG 1 cut(s) 612
Bsp68I TCGCGA 1 cut(s) 956
BspANI GGCC 6 cut(s) 465, 593, 770, 964, 1078, 1093
BspCNI CTCAG 4 cut(s) 116, 910, 1017, 1117
BspFNI CGCG 4 cut(s) 630, 840, 882, 956
BspLI GGNNCC 4 cut(s) 456, 570, 576, 594
BspMI ACCTGC 2 cut(s) 707, 859
BspPI GGATC 3 cut(s) 289, 563, 576
BspTNI GGTCTC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 896
BsrFI RCCGGY 1 cut(s) 1062
BsrI ACTGG 2 cut(s) 283, 941
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 3 cut(s) 406, 612, 1079
BssMI GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
BssSI CACGAG 2 cut(s) 377, 434
BssT1I CCWWGG 2 cut(s) 612, 1079
Bst2BI CACGAG 2 cut(s) 377, 434
Bst2UI CCWGG 2 cut(s) 408, 452
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 175, 645
BstDEI CTNAG 6 cut(s) 103, 368, 668, 897, 1004, 1125
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 88, 298
BstFNI CGCG 4 cut(s) 630, 840, 882, 956
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 8 cut(s) 90, 265, 284, 376, 571, 667, 701, 792
BstMAI GTCTC 2 cut(s) 106, 753
BstMBI GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
BstMCI CGRYCG 2 cut(s) 94, 701
BstMWI GCNNNNNNNGC 4 cut(s) 308, 560, 970, 1006
BstNI CCWGG 2 cut(s) 408, 452
BstSCI CCNGG 2 cut(s) 406, 450
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 4 cut(s) 630, 840, 882, 956
BstV1I GCAGC 3 cut(s) 7, 566, 984
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 3 cut(s) 262, 281, 568
BstYI RGATCY 3 cut(s) 262, 281, 568
BsuRI GGCC 6 cut(s) 465, 593, 770, 964, 1078, 1093
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 389
BtsCI GGATG 2 cut(s) 88, 298
BtsIMutI CAGTG 1 cut(s) 276
BtuMI TCGCGA 1 cut(s) 956
BveI ACCTGC 2 cut(s) 707, 859
Cac8I GCNNGC 2 cut(s) 175, 645
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 2 cut(s) 592, 703
CseI GACGC 2 cut(s) 871, 1003
CspAI ACCGGT 1 cut(s) 1062
CviAII CATG 1 cut(s) 613
DdeI CTNAG 6 cut(s) 103, 368, 668, 897, 1004, 1125
DpnI GATC 8 cut(s) 89, 264, 283, 375, 570, 666, 700, 791
DpnII GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
EaeI YGGCCR 2 cut(s) 962, 1091
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 2 cut(s) 365, 829
Eco130I CCWWGG 2 cut(s) 612, 1079
Eco24I GRGCYC 2 cut(s) 367, 831
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 703
Eco53kI GAGCTC 2 cut(s) 365, 829
Eco72I CACGTG 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 365, 829
EcoRI GAATTC 2 cut(s) 5, 1039
EcoRII CCWGG 2 cut(s) 406, 450
EcoT14I CCWWGG 2 cut(s) 612, 1079
EcoT38I GRGCYC 2 cut(s) 367, 831
ErhI CCWWGG 2 cut(s) 612, 1079
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 1 cut(s) 616
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 1 cut(s) 612
FauI CCCGC 1 cut(s) 295
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 6 cut(s) 21, 555, 689, 894, 965, 998
FokI GGATG 2 cut(s) 95, 305
FriOI GRGCYC 2 cut(s) 367, 831
Fsp4HI GCNGC 6 cut(s) 21, 555, 689, 894, 965, 998
FspBI CTAG 2 cut(s) 317, 1080
GlaI GCGC 1 cut(s) 275
GluI GCNGC 6 cut(s) 21, 555, 689, 894, 965, 998
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 6 cut(s) 465, 593, 770, 964, 1078, 1093
HapII CCGG 2 cut(s) 572, 1063
HgaI GACGC 2 cut(s) 871, 1003
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 616
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 4 cut(s) 34, 145, 199, 1002
HpaII CCGG 2 cut(s) 572, 1063
Hpy166II GTNNAC 3 cut(s) 331, 433, 674
Hpy188I TCNGA 7 cut(s) 520, 568, 703, 820, 987, 1045, 1122
Hpy188III TCNNGA 3 cut(s) 203, 377, 955
Hpy8I GTNNAC 3 cut(s) 331, 433, 674
Hpy99I CGWCG 3 cut(s) 335, 866, 887
HpyAV CCTTC 2 cut(s) 251, 515
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 5 cut(s) 124, 388, 421, 762, 861
HpyCH4V TGCA 7 cut(s) 122, 433, 470, 583, 643, 716, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 560, 970, 1006
HpyF3I CTNAG 6 cut(s) 103, 368, 668, 897, 1004, 1125
HpySE526I ACGT 5 cut(s) 124, 388, 421, 762, 861
Hsp92II CATG 1 cut(s) 616
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
LmnI GCTCC 3 cut(s) 362, 580, 1083
Lsp1109I GCAGC 3 cut(s) 7, 566, 984
MaeI CTAG 2 cut(s) 317, 1080
MaeII ACGT 5 cut(s) 124, 388, 421, 762, 861
MalI GATC 8 cut(s) 89, 264, 283, 375, 570, 666, 700, 791
MbiI CCGCTC 1 cut(s) 896
MboI GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
MboII GAAGA 2 cut(s) 369, 396
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 3 cut(s) 262, 281, 568
MhlI GDGCHC 3 cut(s) 367, 435, 831
MlyI GAGTC 2 cut(s) 28, 996
MmeI TCCRAC 2 cut(s) 88, 803
MnlI CCTC 5 cut(s) 353, 430, 588, 1015, 1120
MseI TTAA 4 cut(s) 252, 650, 858, 1052
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 2 cut(s) 572, 1063
MspR9I CCNGG 2 cut(s) 408, 452
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 2 cut(s) 532, 645
MvaI CCWGG 2 cut(s) 408, 452
MvnI CGCG 4 cut(s) 630, 840, 882, 956
MwoI GCNNNNNNNGC 4 cut(s) 308, 560, 970, 1006
NcoI CCATGG 1 cut(s) 612
NdeII GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
NlaIII CATG 1 cut(s) 616
NlaIV GGNNCC 4 cut(s) 456, 570, 576, 594
NruI TCGCGA 1 cut(s) 956
PctI GAATGC 2 cut(s) 532, 645
PfeI GAWTC 2 cut(s) 145, 199
PflMI CCANNNNNTGG 1 cut(s) 602
PinAI ACCGGT 1 cut(s) 1062
PkrI GCNGC 6 cut(s) 22, 556, 690, 895, 966, 999
Ple19I CGATCG 1 cut(s) 701
PleI GAGTC 2 cut(s) 28, 996
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
PpsI GAGTC 2 cut(s) 28, 996
Ppu21I YACGTR 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 650
Psp124BI GAGCTC 2 cut(s) 367, 831
Psp6I CCWGG 2 cut(s) 406, 450
PspCI CACGTG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 406, 450
PspN4I GGNNCC 4 cut(s) 456, 570, 576, 594
PspPI GGNCC 2 cut(s) 592, 703
PsuI RGATCY 3 cut(s) 262, 281, 568
PvuI CGATCG 1 cut(s) 701
RruI TCGCGA 1 cut(s) 956
SacI GAGCTC 2 cut(s) 367, 831
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 4 cut(s) 252, 650, 858, 1052
SatI GCNGC 6 cut(s) 21, 555, 689, 894, 965, 998
Sau3AI GATC 8 cut(s) 87, 262, 281, 373, 568, 664, 698, 789
Sau96I GGNCC 2 cut(s) 592, 703
SchI GAGTC 2 cut(s) 28, 996
ScrFI CCNGG 2 cut(s) 408, 452
SduI GDGCHC 3 cut(s) 367, 435, 831
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SspI AATATT 2 cut(s) 539, 623
SspMI CTAG 2 cut(s) 317, 1080
SstI GAGCTC 2 cut(s) 367, 831
StyD4I CCNGG 2 cut(s) 406, 450
StyI CCWWGG 2 cut(s) 612, 1079
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 5 cut(s) 127, 391, 424, 765, 864
TaqI TCGA 3 cut(s) 94, 330, 393
TaqII GACCGA 1 cut(s) 80
TauI GCSGC 3 cut(s) 691, 896, 967
TfiI GAWTC 2 cut(s) 145, 199
Tru1I TTAA 4 cut(s) 252, 650, 858, 1052
Tru9I TTAA 4 cut(s) 252, 650, 858, 1052
TscAI CASTG 1 cut(s) 283
TseI GCWGC 3 cut(s) 20, 554, 997
TspDTI ATGAA 1 cut(s) 926
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 703
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 5 cut(s) 5, 70, 167, 510, 1039
XmaJI CCTAGG 1 cut(s) 1079
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 2 cut(s) 317, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.