Rh5DG212400

ATP synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009874
Physical Location & Seq
Forward (+)
23832779 .. 23833462
684 bp
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UTR
Exon/CDS
Intron
Rh5DG212400.1

Sequence Viewer

Length: 684 bp
ATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCATCTCTTAGAAAGAGTCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTGCCCGTCATTGAAACACAAGCTGGAGACGTATCGACCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTACTATTAACGTCGGCTTACCTGTCAGTCGCGTCGGGTCTGCCACTCAATTGAAAATTATGAAACAAGTTTGCGGTAGTTCAAAATTGGAATTGGCACAATATCGCGAAGTGGCCGCCGTTGCTCAATTTGGGTCAGACCTTGACGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAAGAACCACAATATGCACCACTTCCAATTGAAAAACAAAATTTAGTCATTTATGCAGCTGTCAATGGATTATATGATCGAATGCCACTAGACAGAATCTCTCAATATGAGAGAGCCATTCCAAATAGTATAAAACTAGAATTAGTACAATCCCTTTTAGAAAAGGGTGGGTTAACTAACAAAAGAAAGATGGAACCAGATGCATTCTTAAAAGAAAGTGCTTTGCCTTTCCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

227

Amino Acids

25.01

Weight (kDa)

8.81

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 1 - 92 6.9e-27 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C PF00306 99 - 211 6.8e-35 ATP synthase alpha/beta chain, C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccII CGCG 3 cut(s) 237, 279, 354
AciI CCGC 4 cut(s) 126, 237, 321, 363
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 2 cut(s) 441, 591
AgsI TTSAA 4 cut(s) 143, 301, 330, 476
AjnI CCWGG 2 cut(s) 25, 43
AluBI AGCT 4 cut(s) 120, 152, 226, 503
AluI AGCT 4 cut(s) 120, 152, 226, 503
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 2 cut(s) 28, 360
ApeKI GCWGC 2 cut(s) 395, 500
ApoI RAATTY 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 382, 512
BccI CCATC 3 cut(s) 78, 194, 628
BceAI ACGGC 2 cut(s) 15, 350
BciT130I CCWGG 2 cut(s) 27, 45
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 533, 581
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 3 cut(s) 363, 396, 501
BlsI GCNGC 3 cut(s) 364, 397, 502
BmcAI AGTACT 1 cut(s) 441
Bme1390I CCNGG 2 cut(s) 27, 45
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 2 cut(s) 27, 45
BmsI GCATC 1 cut(s) 634
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 27, 45
BseDI CCNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 382, 512
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 3 cut(s) 237, 279, 354
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 30, 362
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmI GAATGC 2 cut(s) 531, 647
BsnI GGCC 2 cut(s) 30, 362
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 95, 186, 520
Bsp68I TCGCGA 1 cut(s) 354
BspACI CCGC 4 cut(s) 126, 237, 321, 363
BspANI GGCC 2 cut(s) 30, 362
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 3 cut(s) 237, 279, 354
BspLI GGNNCC 1 cut(s) 639
BspMI ACCTGC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 95, 186, 520
Bst2UI CCWGG 2 cut(s) 27, 45
BstDEI CTNAG 2 cut(s) 76, 402
BstFNI CGCG 3 cut(s) 237, 279, 354
BstKTI GATC 3 cut(s) 98, 189, 523
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 95, 186, 520
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 368, 404
BstNI CCWGG 2 cut(s) 27, 45
BstSCI CCNGG 2 cut(s) 25, 43
BstUI CGCG 3 cut(s) 237, 279, 354
BstV1I GCAGC 2 cut(s) 382, 512
BsuRI GGCC 2 cut(s) 30, 362
BtgZI GCGATG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 354
BveI ACCTGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 2 cut(s) 268, 401
Csp6I GTAC 2 cut(s) 440, 590
CviQI GTAC 2 cut(s) 440, 590
DdeI CTNAG 2 cut(s) 76, 402
DpnI GATC 3 cut(s) 97, 188, 522
DpnII GATC 3 cut(s) 95, 186, 520
EaeI YGGCCR 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 25, 43
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 150
FaiI YATR 8 cut(s) 171, 308, 459, 498, 517, 519, 552, 575
Fnu4HI GCNGC 3 cut(s) 363, 396, 501
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 363, 396, 501
FspBI CTAG 2 cut(s) 533, 581
GluI GCNGC 3 cut(s) 363, 396, 501
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 30, 362
HgaI GACGC 2 cut(s) 268, 401
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 3 cut(s) 84, 400, 540
HpaI GTTAAC 1 cut(s) 618
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 3 cut(s) 100, 217, 385
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 2 cut(s) 263, 284
HpyCH4IV ACGT 2 cut(s) 159, 258
HpyCH4V TGCA 5 cut(s) 113, 425, 461, 500, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 404
HpyF3I CTNAG 2 cut(s) 76, 402
HpySE526I ACGT 2 cut(s) 159, 258
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 3 cut(s) 95, 186, 520
Lsp1109I GCAGC 2 cut(s) 382, 512
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 533, 581
MaeII ACGT 2 cut(s) 159, 258
MaeIII GTNAC 1 cut(s) 12
MalI GATC 3 cut(s) 97, 188, 522
MboI GATC 3 cut(s) 95, 186, 520
MfeI CAATTG 2 cut(s) 296, 471
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 9 cut(s) 240, 296, 303, 332, 338, 374, 471, 484, 584
MlyI GAGTC 2 cut(s) 93, 394
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 2 cut(s) 28, 413
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 3 cut(s) 255, 617, 653
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 27, 45
MunI CAATTG 2 cut(s) 296, 471
Mva1269I GAATGC 2 cut(s) 531, 647
MvaI CCWGG 2 cut(s) 27, 45
MvnI CGCG 3 cut(s) 237, 279, 354
MwoI GCNNNNNNNGC 2 cut(s) 368, 404
NdeII GATC 3 cut(s) 95, 186, 520
NlaIV GGNNCC 1 cut(s) 639
NruI TCGCGA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 649
PctI GAATGC 2 cut(s) 531, 647
PfeI GAWTC 1 cut(s) 540
PkrI GCNGC 3 cut(s) 364, 397, 502
Ple19I CGATCG 1 cut(s) 98
PleI GAGTC 2 cut(s) 92, 394
PpsI GAGTC 2 cut(s) 92, 394
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 25, 43
PspGI CCWGG 2 cut(s) 25, 43
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 100
PvuI CGATCG 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 503
RruI TCGCGA 1 cut(s) 354
RsaI GTAC 2 cut(s) 441, 591
RsaNI GTAC 2 cut(s) 440, 590
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 255, 617, 653
SatI GCNGC 3 cut(s) 363, 396, 501
Sau3AI GATC 3 cut(s) 95, 186, 520
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 441
SchI GAGTC 2 cut(s) 93, 394
ScrFI CCNGG 2 cut(s) 27, 45
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 634
SinI GGWCC 1 cut(s) 100
Sse9I AATT 9 cut(s) 240, 296, 303, 332, 338, 374, 471, 484, 584
SsiI CCGC 4 cut(s) 126, 237, 321, 363
SspMI CTAG 2 cut(s) 533, 581
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 25, 43
TaiI ACGT 2 cut(s) 162, 261
TaqI TCGA 2 cut(s) 164, 523
TasI AATT 9 cut(s) 240, 296, 303, 332, 338, 374, 471, 484, 584
TatI WGTACW 2 cut(s) 439, 589
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 3 cut(s) 255, 617, 653
Tru9I TTAA 3 cut(s) 255, 617, 653
TseI GCWGC 2 cut(s) 395, 500
TspDTI ATGAA 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 484
XspI CTAG 2 cut(s) 533, 581
ZrmI AGTACT 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.