Rh5CG231600

ATP synthase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009874
Physical Location & Seq
Forward (+)
24051945 .. 24052961
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG231600.1

Sequence Viewer

Length: 816 bp
ATGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTTTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTAAGAATGAGAATATAGGGATTGTTGTCTTTGGTAGTGATTCCGCTATTAAAGAAAGAGATCTTGTCAAGCGCACTGGATCTATTGTGAATGTTCCTGCGGGAAAGGCTCTGCTAGGGCGTGTGGTCGACGGGTTGGGAGTTCTTATTGATGGAAGAGGAGCTCTAAGCAATCACGAGCAAAGACGTGTCGAAGTGAAAGCCCCTGGCATTATTAAACCAATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTTAGAAGGGGATGCTATGGAATATTCCATTCTTGTAGTAGCCACCGCTTCGGATCCGGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGTGATAATGGAATGCACGCGTTAATAATCTATGATGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCATCTCTTAGAAAGAGCCGCTAAACGATTGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTGCCCGTCATTGAAACACAAGCTGGAGACGTATCGACCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

271

Amino Acids

29.12

Weight (kDa)

5.47

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 5 - 72 5.6e-19 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 115 - 271 7.4e-52 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 488
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 533
AciI CCGC 7 cut(s) 111, 180, 236, 447, 566, 669, 708
AclWI GGATC 3 cut(s) 223, 449, 462
AcsI RAATTY 3 cut(s) 4, 101, 396
AcvI CACGTG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 488
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 3 cut(s) 58, 322, 531
AgsI TTSAA 7 cut(s) 11, 73, 83, 101, 133, 395, 725
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 3 cut(s) 340, 607, 625
AluBI AGCT 5 cut(s) 86, 299, 702, 734, 808
AluI AGCT 5 cut(s) 86, 299, 702, 734, 808
Alw21I GWGCWC 2 cut(s) 301, 810
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 3 cut(s) 223, 449, 462
AoxI GGCC 2 cut(s) 477, 610
ApoI RAATTY 3 cut(s) 4, 101, 396
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 478, 682
AvaII GGWCC 1 cut(s) 682
BamHI GGATCC 1 cut(s) 454
BanII GRGCYC 2 cut(s) 301, 810
BauI CACGAG 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 301, 810
BccI CCATC 4 cut(s) 41, 281, 660, 776
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 3 cut(s) 342, 609, 627
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 686
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 669
BlsI GCNGC 1 cut(s) 670
Bme1390I CCNGG 3 cut(s) 342, 609, 627
Bme18I GGWCC 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 478, 682
BmiI GGNNCC 3 cut(s) 456, 462, 480
BmrFI CCNGG 3 cut(s) 342, 609, 627
BmsI GCATC 1 cut(s) 403
BoxI GACNNNNGTC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 756
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 340, 498, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 3 cut(s) 342, 609, 627
BseDI CCNNGG 3 cut(s) 340, 498, 625
BseGI GGATG 2 cut(s) 22, 418
BseLI CCNNNNNNNGG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 309, 453
BseYI CCCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 479, 612
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 301, 810
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 732
BsmBI CGTCTC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 2 cut(s) 479, 612
Bsp1286I GDGCHC 2 cut(s) 301, 810
Bsp143I GATC 6 cut(s) 21, 196, 215, 454, 550, 768
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 7 cut(s) 111, 180, 236, 447, 566, 669, 708
BspANI GGCC 2 cut(s) 479, 612
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 456, 462, 480
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 3 cut(s) 223, 449, 462
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 340, 498, 625
BssMI GATC 6 cut(s) 21, 196, 215, 454, 550, 768
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 342, 609, 627
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 109, 531
BstDEI CTNAG 3 cut(s) 302, 554, 658
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 22, 418
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 6 cut(s) 24, 199, 218, 457, 553, 771
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 6 cut(s) 21, 196, 215, 454, 550, 768
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 3 cut(s) 342, 609, 627
BstPAI GACNNNNGTC 1 cut(s) 583
BstSCI CCNGG 3 cut(s) 340, 607, 625
BstUI CGCG 1 cut(s) 533
BstX2I RGATCY 3 cut(s) 196, 215, 454
BstYI RGATCY 3 cut(s) 196, 215, 454
BsuRI GGCC 2 cut(s) 479, 612
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 1 cut(s) 645
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 22, 418
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 109, 531
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 478, 682
CviAII CATG 1 cut(s) 499
DdeI CTNAG 3 cut(s) 302, 554, 658
DpnI GATC 6 cut(s) 23, 198, 217, 456, 552, 770
DpnII GATC 6 cut(s) 21, 196, 215, 454, 550, 768
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Ecl136II GAGCTC 2 cut(s) 299, 808
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 2 cut(s) 301, 810
Eco47I GGWCC 1 cut(s) 682
Eco53kI GAGCTC 2 cut(s) 299, 808
Eco72I CACGTG 1 cut(s) 59
EcoICRI GAGCTC 2 cut(s) 299, 808
EcoRII CCWGG 3 cut(s) 340, 607, 625
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 301, 810
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 732
FaeI CATG 1 cut(s) 502
FaiI YATR 8 cut(s) 66, 152, 419, 484, 500, 546, 574, 753
FatI CATG 1 cut(s) 498
FauI CCCGC 1 cut(s) 229
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 2 cut(s) 29, 425
FriOI GRGCYC 2 cut(s) 301, 810
Fsp4HI GCNGC 1 cut(s) 669
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 669
GsaI CCCAGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 2 cut(s) 479, 612
HapII CCGG 1 cut(s) 458
HhaI GCGC 1 cut(s) 210
Hin1II CATG 1 cut(s) 502
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 79, 133, 176
HpaII CCGG 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 265, 560
Hpy188I TCNGA 2 cut(s) 454, 799
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 265, 560
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 3 cut(s) 58, 322, 741
HpyCH4V TGCA 4 cut(s) 56, 469, 529, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 3 cut(s) 302, 554, 658
HpySE526I ACGT 3 cut(s) 58, 322, 741
Hsp92II CATG 1 cut(s) 502
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 6 cut(s) 21, 196, 215, 454, 550, 768
LmnI GCTCC 2 cut(s) 296, 466
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 251
MaeII ACGT 3 cut(s) 58, 322, 741
MaeIII GTNAC 1 cut(s) 594
MalI GATC 6 cut(s) 23, 198, 217, 456, 552, 770
MboI GATC 6 cut(s) 21, 196, 215, 454, 550, 768
MboII GAAGA 1 cut(s) 303
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 3 cut(s) 196, 215, 454
MhlI GDGCHC 2 cut(s) 301, 810
MluCI AATT 6 cut(s) 4, 101, 357, 386, 396, 470
MluI ACGCGT 1 cut(s) 531
MmeI TCCRAC 2 cut(s) 22, 782
MnlI CCTC 3 cut(s) 287, 474, 610
MseI TTAA 4 cut(s) 138, 186, 351, 536
MspA1I CMGCKG 1 cut(s) 111
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 3 cut(s) 342, 609, 627
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 3 cut(s) 342, 609, 627
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 498
NdeII GATC 6 cut(s) 21, 196, 215, 454, 550, 768
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 3 cut(s) 456, 462, 480
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 79, 133, 176
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 1 cut(s) 670
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 583
Psp124BI GAGCTC 2 cut(s) 301, 810
Psp6I CCWGG 3 cut(s) 340, 607, 625
PspCI CACGTG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 3 cut(s) 340, 607, 625
PspN4I GGNNCC 3 cut(s) 456, 462, 480
PspPI GGNCC 2 cut(s) 478, 682
PsuI RGATCY 3 cut(s) 196, 215, 454
SacI GAGCTC 2 cut(s) 301, 810
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 4 cut(s) 138, 186, 351, 536
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 6 cut(s) 21, 196, 215, 454, 550, 768
Sau96I GGNCC 2 cut(s) 478, 682
ScrFI CCNGG 3 cut(s) 342, 609, 627
SduI GDGCHC 2 cut(s) 301, 810
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 6 cut(s) 4, 101, 357, 386, 396, 470
SsiI CCGC 7 cut(s) 111, 180, 236, 447, 566, 669, 708
SspI AATATT 2 cut(s) 425, 509
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 2 cut(s) 301, 810
StyD4I CCNGG 3 cut(s) 340, 607, 625
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 3 cut(s) 61, 325, 744
TaqI TCGA 5 cut(s) 28, 264, 327, 577, 746
TaqII GACCGA 1 cut(s) 14
TasI AATT 6 cut(s) 4, 101, 357, 386, 396, 470
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 3 cut(s) 79, 133, 176
Tru1I TTAA 4 cut(s) 138, 186, 351, 536
Tru9I TTAA 4 cut(s) 138, 186, 351, 536
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 3 cut(s) 4, 101, 396
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.