Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Forward (+)

32808238 .. 32809531

Gene Structure 1294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTTCCCAACAACAAAGTTTGTGATGTCTTAATAGACATACCGCCACAGGGAGACTCCGAATGCTTTGATGATGATGGACGACCCAGAAGAAGTGGAACGCTTTGGACTGCAAGTGCTCACAGAACAACGGCAGTAATTGACTCTGGGGTTCTGTCCTTGGCTTGGGCAGTAGCTCAACTTGGATGGATTGCTGGCCCAGTTGTCATTCTCTTGTTCTCTTGGGTGACTTACTACACTTCAACTCTGCTCTCCGATTGCTATCGCAACAATGATCCTGACACCGAAAAAAGGAACTACACATACATGGATGCTGTTAAATCCAACCTAGGTGGTGCTAAGGTCAAGATTTGTGGAGTTGTTCAGTACTTGAACCTAGTTGGAAGTGCCATTGGATACACTATAGCAGCATCTATAAGCATGATGGCAATAAAGAGATCAAACTACTTCCGCAAGAGTGGCGGGAAAGATCCATGCCATATCAACAGCAACCCGTACATGATTGCTTTCGGCATCATGCAAATCGTATTGTCGCAGATTCTAAACTTCGACCAGTTGTGGTGGCTCTCCACTGTTGCGGCGGTTATGTCATTCACTTACTCCACAATTGGAATAGGGCTTGGAATTGCCAAAGTTGCAGAAATCGGAACCATCATGGGAAGTATGACTGGAATAAGCATTGGAAGTGTGACTGAAACCCAAAAGATGTGGAGGAGATTCCAAGCACTTGACTTATCCCCTGGGAACTTGCTCACTGATTTTGGCTTCTACAACCCTTATTGGCTCCTAGACATTGCCAACGTTGGTATAGTTGTCCACATTGTTGGCGGATACCAAGTCTTTTGTCAACCCTTTTTTGCCTTTGTTGAGAAGTCAATAGTCGGAAAATACCAAGATAGTAATTTCATCACAAGAGAAATCTGGTTTTGGCCACTGCAAACTGAGCCTTTTGAGATTGTTGTGGAGGACTTCCTTCGTGATTGTAACCCCTATGATATCTATATATGCTCCTCCCCGTTCTTCAACCATGTGCTTGGACTTCTCGGTGCTTTGGGATTTTGGCCTCTCACAGTTGACTTCCTAATAGAGATGTATATTGTGCAGAGGAGGATACCAAAGTGGAGTAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

377

Amino Acids

42.35

Weight (kDa)

6.1

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	32 - 242	7e-50	Transmembrane amino acid transporter protein
Aa_trans	PF01490	247 - 376	2.7e-13	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	44, 451, 462, 578, 581, 828
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	2 cut(s)	269, 464
AcoI	YGGCCR	1 cut(s)	929
AfaI	GTAC	2 cut(s)	368, 497
AfiI	CCNNNNNNNGG	3 cut(s)	50, 165, 291
AgsI	TTSAA	3 cut(s)	243, 373, 1024
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	269, 464
AoxI	GGCC	3 cut(s)	196, 929, 1061
ApeKI	GCWGC	1 cut(s)	407
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	238
AvrII	CCTAGG	1 cut(s)	328
BaeI	ACNNNNGTAYC	1 cut(s)	1103
BalI	TGGCCA	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	4 cut(s)	71, 180, 418, 659
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	741
BciVI	GTATCC	3 cut(s)	389, 824, 1104
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	3 cut(s)	329, 377, 788
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	3 cut(s)	389, 824, 1104
BisI	GCNGC	2 cut(s)	408, 579
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	409, 580
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	649, 785
BmrFI	CCNGG	1 cut(s)	741
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	301, 419, 522
BmuI	ACTGGG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	159, 328, 739, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 165, 291
Bse1I	ACTGG	3 cut(s)	200, 553, 673
Bse3DI	GCAATG	1 cut(s)	792
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	4 cut(s)	159, 328, 739, 740
BseGI	GGATG	2 cut(s)	191, 316
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	3 cut(s)	50, 165, 291
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	3 cut(s)	200, 553, 673
BseRI	GAGGAG	3 cut(s)	727, 1000, 1120
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	1121
BshFI	GGCC	3 cut(s)	198, 931, 1063
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	50, 165, 291
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	198, 931, 1063
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	274, 437, 469
BspACI	CCGC	6 cut(s)	44, 451, 462, 578, 581, 828
BspANI	GGCC	3 cut(s)	198, 931, 1063
BspCNI	CTCAG	1 cut(s)	934
BspLI	GGNNCC	2 cut(s)	649, 785
BspPI	GGATC	2 cut(s)	269, 464
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	3 cut(s)	200, 553, 673
BssECI	CCNNGG	4 cut(s)	159, 328, 739, 740
BssMI	GATC	3 cut(s)	274, 437, 469
BssT1I	CCWWGG	2 cut(s)	159, 328
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	574, 1072
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	339, 942
BstF5I	GGATG	2 cut(s)	191, 316
BstKTI	GATC	3 cut(s)	277, 440, 472
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	274, 437, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	459, 635, 943
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	2 cut(s)	824, 1034
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	3 cut(s)	389, 824, 1104
BsuRI	GGCC	3 cut(s)	198, 931, 1063
BtsCI	GGATG	2 cut(s)	191, 316
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	3 cut(s)	570, 753, 932
Cac8I	GCNNGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	367, 496
CspCI	CAANNNNNGTGG	6 cut(s)	313, 334, 348, 369, 689, 724
CviAII	CATG	7 cut(s)	307, 421, 474, 499, 517, 655, 1028
CviQI	GTAC	2 cut(s)	367, 496
DdeI	CTNAG	2 cut(s)	339, 942
DpnI	GATC	3 cut(s)	276, 439, 471
DpnII	GATC	3 cut(s)	274, 437, 469
EaeI	YGGCCR	1 cut(s)	929
EciI	GGCGGA	1 cut(s)	843
Eco130I	CCWWGG	2 cut(s)	159, 328
Eco32I	GATATC	1 cut(s)	997
EcoRII	CCWGG	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	997
EcoT14I	CCWWGG	2 cut(s)	159, 328
ErhI	CCWWGG	2 cut(s)	159, 328
FaeI	CATG	7 cut(s)	310, 424, 477, 502, 520, 658, 1031
FatI	CATG	7 cut(s)	306, 420, 473, 498, 516, 654, 1027
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	408, 579
FokI	GGATG	2 cut(s)	198, 323
Fsp4HI	GCNGC	2 cut(s)	408, 579
FspBI	CTAG	3 cut(s)	329, 377, 788
GluI	GCNGC	2 cut(s)	408, 579
HaeIII	GGCC	3 cut(s)	198, 931, 1063
Hin1II	CATG	7 cut(s)	310, 424, 477, 502, 520, 658, 1031
HincII	GTYRAC	2 cut(s)	848, 1075
HindII	GTYRAC	2 cut(s)	848, 1075
HinfI	GANTC	4 cut(s)	56, 143, 538, 717
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	817, 848, 1075
Hpy188I	TCNGA	4 cut(s)	61, 256, 647, 884
Hpy188III	TCNNGA	3 cut(s)	278, 346, 977
Hpy8I	GTNNAC	3 cut(s)	817, 848, 1075
HpyAV	CCTTC	1 cut(s)	983
HpyCH4III	ACNGT	2 cut(s)	574, 1072
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	5 cut(s)	113, 520, 638, 937, 1102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	459, 635, 943
HpyF3I	CTNAG	2 cut(s)	339, 942
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	7 cut(s)	310, 424, 477, 502, 520, 658, 1031
Kzo9I	GATC	3 cut(s)	274, 437, 469
LmnI	GCTCC	2 cut(s)	789, 1013
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	3 cut(s)	301, 419, 522
MaeI	CTAG	3 cut(s)	329, 377, 788
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	226, 688, 983
MalI	GATC	3 cut(s)	276, 439, 471
MboI	GATC	3 cut(s)	274, 437, 469
MboII	GAAGA	2 cut(s)	102, 1012
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	931
MluCI	AATT	4 cut(s)	138, 606, 624, 901
MluNI	TGGCCA	1 cut(s)	931
MlyI	GAGTC	2 cut(s)	50, 137
MmeI	TCCRAC	3 cut(s)	348, 361, 862
MnlI	CCTC	6 cut(s)	705, 958, 1021, 1074, 1098, 1101
Mox20I	TGGCCA	1 cut(s)	931
MscI	TGGCCA	1 cut(s)	931
MseI	TTAA	2 cut(s)	32, 318
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	931
MspR9I	CCNGG	1 cut(s)	741
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	3 cut(s)	459, 635, 943
NdeII	GATC	3 cut(s)	274, 437, 469
NlaIII	CATG	7 cut(s)	310, 424, 477, 502, 520, 658, 1031
NlaIV	GGNNCC	2 cut(s)	649, 785
NmuCI	GTSAC	2 cut(s)	226, 688
PasI	CCCWGGG	1 cut(s)	740
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	538, 717
PkrI	GCNGC	2 cut(s)	409, 580
PleI	GAGTC	2 cut(s)	50, 137
PpsI	GAGTC	2 cut(s)	50, 137
Psp1406I	AACGTT	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	649, 785
PspPI	GGNCC	1 cut(s)	197
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	368, 497
RsaNI	GTAC	2 cut(s)	367, 496
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	32, 318
SatI	GCNGC	2 cut(s)	408, 579
Sau3AI	GATC	3 cut(s)	274, 437, 469
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	2 cut(s)	50, 137
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	7 cut(s)	178, 330, 334, 345, 378, 804, 1133
SfaNI	GCATC	3 cut(s)	301, 419, 522
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	138, 606, 624, 901
SsiI	CCGC	6 cut(s)	44, 451, 462, 578, 581, 828
SspMI	CTAG	3 cut(s)	329, 377, 788
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	159, 328
TaaI	ACNGT	2 cut(s)	574, 1072
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	1 cut(s)	549
TasI	AATT	4 cut(s)	138, 606, 624, 901
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	538, 717
Tru1I	TTAA	2 cut(s)	32, 318
Tru9I	TTAA	2 cut(s)	32, 318
TscAI	CASTG	3 cut(s)	577, 760, 939
TseFI	GTSAC	2 cut(s)	226, 688
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	226, 688
TspDTI	ATGAA	1 cut(s)	895
TspRI	CASTG	3 cut(s)	577, 760, 939
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	3 cut(s)	329, 377, 788
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.