Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Forward (+)

34415803 .. 34418725

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGACCCAAAAGTGGGGATACACTTCCTTCAATATCAGTGATAACAAGAAGCACATGTTTCCCAACAACAAAGTTTGTGATGTCTCAATAGACATACCGCCACAGGGAAACTCCGAATGCTTTGATGATGATGGACGACCCAGAAGAAGTGGAACGCTTTGGACTGCAAGTGCTCACATAACAACGGCAGTAATTGGCTCTGGGGTTCTTTCCTTGGCTTGGGCAATAGCTCAGCTTGGATGGATTGCTGGCCCAGTTGTCATTCTCTTGTTCTCTTGGGTGACTTACTACACTTCAACTCTGCTCTCCGATTGCTATCGCAACAATGATCCTGACACAGGAAAAAGGAACTACACATACATGGATGCTGTTAAATCCAACCTAGGTGGTGCTAAGGTCAAGATTTGTGGAGTTGTTCAGTACTTGAACCTAGTCGGAAGTGCCATTGGATACACTATAGCAGCATCTATAAGCATGATGGCAATAAAGAGATCAAACTGCTTCCACAAGAGTGGCGGGAAAGATCCATGCCATATCAACAGCAACCCGTACATGATTGCTTTCGGCATCATGCAAATCGTATTGTCGCAGATTCCAAACTTCGACCAGTTGTGGTGGCTCTCCATTGTTGCGGCGGTTATGTCATTCACTTACTCCACAATTGGACTAGGACTTGGAATTGCCAAAGTTGCAGAAACCGGAACCATCATGGGAAGTATGACTGGAATAAGCATTGGAAGTGTGACTGAAACCCAAAAGATGTGGAGGAGATTCCAAGCACTTGGTAACATAGCTTTTGCCTACTCTTTCTCTCTTATTTTATTGGAAATTCAGGACACAATTAGATCACCACCATCTGAAGCCAAGACAATGAAGAAGGCCACAATAATTAGCATTGCAGTTTCAACCGTTTTCTACATGCTATGTGGCTGCATGGGCTACGCTGCTTTTGGAGACTTAGCCCCTGGGAACTTGCTCACTGGTTTTGGCTTCTACAACCCTTATTGGCTCCTAGACATTGCCAACGTTGCCATAGTAGTCCACCTTGTTGGCGGATACCAAGTCTTTTGCCAACCCTTTTTCGCCTTTGTTGAGAAAGCAGCAGCCGAAAAGTACCCGGACAGTAATTTCATTACAAGAGAAATCAGGGTACGTGTCCCCTGTTTCTGCCACTACAACATTAACCTCTTCAGATCAGTGTGGAGGACTGCCTTTGTGATTGTGGCCACTCTAATATCTATGCTCCTCCCATTCTTTAACGATGTCGTTGGACTTCTCGGTGCTTTGGGATTCTGGCCTCTCACAATTTACTTCCCAATAGAGATGTACATTGAGCAGAAGAGGATACGAAAGTGGAGCAAAAGGTGGATTTGCCTCCAGATCCTAAGTGTTGTTTGTCTCATAATAACCATATCATCTGCTGCTGGCTCCATTGCTGGTGTGATTCTTGATCTCAAATCCTTCAAGCCATTCAAGACCAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

495

Amino Acids

54.82

Weight (kDa)

9.08

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	50 - 482	1.9e-121	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	98, 516, 632, 635, 1053
AclI	AACGTT	1 cut(s)	1026
AclWI	GGATC	3 cut(s)	323, 518, 1375
AcoI	YGGCCR	1 cut(s)	1224
AcsI	RAATTY	1 cut(s)	828
AcuI	CTGAAG	2 cut(s)	879, 1174
AfaI	GTAC	5 cut(s)	422, 551, 1115, 1152, 1328
AfiI	CCNNNNNNNGG	5 cut(s)	12, 13, 104, 219, 338
AflIII	ACRYGT	2 cut(s)	54, 1153
AgsI	TTSAA	6 cut(s)	31, 297, 427, 906, 1465, 1474
AjnI	CCWGG	1 cut(s)	964
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	3 cut(s)	230, 235, 794
AluI	AGCT	3 cut(s)	230, 235, 794
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	88, 948, 1403
AlwI	GGATC	3 cut(s)	323, 518, 1375
AoxI	GGCC	4 cut(s)	250, 879, 1224, 1295
ApeKI	GCWGC	6 cut(s)	461, 930, 944, 1100, 1103, 1421
ApoI	RAATTY	1 cut(s)	828
AspA2I	CCTAGG	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	1118
AsuHPI	GGTGA	2 cut(s)	292, 840
AvrII	CCTAGG	1 cut(s)	382
BaeI	ACNNNNGTAYC	2 cut(s)	1337, 1370
BalI	TGGCCA	1 cut(s)	1226
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	6 cut(s)	473, 917, 931, 1112, 1115, 1408
BccI	CCATC	5 cut(s)	125, 234, 472, 713, 862
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	966
BciVI	GTATCC	4 cut(s)	11, 443, 1049, 1338
BcnI	CCSGG	1 cut(s)	1118
BcoDI	GTCTC	3 cut(s)	88, 948, 1403
BfaI	CTAG	5 cut(s)	383, 431, 668, 1013, 1486
BfmI	CTRYAG	1 cut(s)	456
BfuI	GTATCC	4 cut(s)	11, 443, 1049, 1338
BisI	GCNGC	7 cut(s)	462, 633, 931, 945, 1101, 1104, 1422
BlnI	CCTAGG	1 cut(s)	382
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	7 cut(s)	463, 634, 932, 946, 1102, 1105, 1423
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	966, 1118
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	703, 1010, 1429
BmrFI	CCNGG	2 cut(s)	966, 1118
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	3 cut(s)	355, 473, 576
BmuI	ACTGGG	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	1361
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	1118
BsaAI	YACGTR	1 cut(s)	1154
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	213, 382, 964, 965
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 13, 104, 219, 338
Bse1I	ACTGG	5 cut(s)	254, 607, 727, 985, 1479
Bse3DI	GCAATG	3 cut(s)	894, 1017, 1431
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	4 cut(s)	213, 382, 964, 965
BseGI	GGATG	2 cut(s)	245, 370
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	5 cut(s)	12, 13, 104, 219, 338
BseMI	GCAATG	3 cut(s)	894, 1017, 1431
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	5 cut(s)	254, 607, 727, 985, 1479
BseRI	GAGGAG	2 cut(s)	781, 1235
BseXI	GCAGC	6 cut(s)	473, 917, 931, 1112, 1115, 1408
BshFI	GGCC	4 cut(s)	252, 881, 1226, 1297
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	699, 1118
BslFI	GGGAC	1 cut(s)	1142
BslI	CCNNNNNNNGG	5 cut(s)	12, 13, 104, 219, 338
BsmAI	GTCTC	3 cut(s)	88, 948, 1403
BsmFI	GGGAC	1 cut(s)	1142
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	252, 881, 1226, 1297
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	1326
Bsp143I	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	5 cut(s)	98, 516, 632, 635, 1053
BspANI	GGCC	4 cut(s)	252, 881, 1226, 1297
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	703, 1010, 1429
BspPI	GGATC	3 cut(s)	323, 518, 1375
BsrDI	GCAATG	3 cut(s)	894, 1017, 1431
BsrGI	TGTACA	1 cut(s)	1326
BsrI	ACTGG	5 cut(s)	254, 607, 727, 985, 1479
BssECI	CCNNGG	4 cut(s)	213, 382, 964, 965
BssMI	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
BssT1I	CCWWGG	2 cut(s)	213, 382
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	2 cut(s)	910, 1124
Bst6I	CTCTTC	2 cut(s)	1193, 1334
BstAUI	TGTACA	1 cut(s)	1326
BstBAI	YACGTR	1 cut(s)	1154
BstC8I	GCNNGC	2 cut(s)	250, 1426
BstDEI	CTNAG	4 cut(s)	231, 393, 958, 1385
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	245, 370
BstKTI	GATC	7 cut(s)	331, 494, 526, 848, 1196, 1383, 1453
BstMAI	GTCTC	3 cut(s)	88, 948, 1403
BstMBI	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
BstMWI	GCNNNNNNNGC	3 cut(s)	689, 936, 1028
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	2 cut(s)	58, 922
BstSCI	CCNGG	2 cut(s)	964, 1116
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	6 cut(s)	473, 917, 931, 1112, 1115, 1408
BstX2I	RGATCY	2 cut(s)	523, 1380
BstXI	CCANNNNNNTGG	3 cut(s)	512, 782, 1049
BstYI	RGATCY	2 cut(s)	523, 1380
BsuI	GTATCC	4 cut(s)	11, 443, 1049, 1338
BsuRI	GGCC	4 cut(s)	252, 881, 1226, 1297
BtsCI	GGATG	2 cut(s)	245, 370
BtsIMutI	CAGTG	3 cut(s)	43, 978, 1203
Cac8I	GCNNGC	2 cut(s)	250, 1426
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	5 cut(s)	421, 550, 1114, 1151, 1327
CspCI	CAANNNNNGTGG	6 cut(s)	367, 388, 402, 423, 743, 778
CviAII	CATG	9 cut(s)	55, 361, 475, 528, 553, 571, 709, 919, 934
CviQI	GTAC	5 cut(s)	421, 550, 1114, 1151, 1327
DdeI	CTNAG	4 cut(s)	231, 393, 958, 1385
DpnI	GATC	7 cut(s)	330, 493, 525, 847, 1195, 1382, 1452
DpnII	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
EaeI	YGGCCR	1 cut(s)	1224
Eam1104I	CTCTTC	2 cut(s)	1193, 1334
EarI	CTCTTC	2 cut(s)	1193, 1334
EciI	GGCGGA	1 cut(s)	1068
Eco130I	CCWWGG	2 cut(s)	213, 382
Eco57I	CTGAAG	2 cut(s)	879, 1174
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	964
EcoT14I	CCWWGG	2 cut(s)	213, 382
ErhI	CCWWGG	2 cut(s)	213, 382
FaeI	CATG	9 cut(s)	58, 364, 478, 531, 556, 574, 712, 922, 937
FaqI	GGGAC	1 cut(s)	1142
FatI	CATG	9 cut(s)	54, 360, 474, 527, 552, 570, 708, 918, 933
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	7 cut(s)	462, 633, 931, 945, 1101, 1104, 1422
FokI	GGATG	2 cut(s)	252, 377
Fsp4HI	GCNGC	7 cut(s)	462, 633, 931, 945, 1101, 1104, 1422
FspBI	CTAG	5 cut(s)	383, 431, 668, 1013, 1486
GluI	GCNGC	7 cut(s)	462, 633, 931, 945, 1101, 1104, 1422
GsuI	CTGGAG	1 cut(s)	1361
HaeIII	GGCC	4 cut(s)	252, 881, 1226, 1297
HapII	CCGG	2 cut(s)	699, 1118
Hin1II	CATG	9 cut(s)	58, 364, 478, 531, 556, 574, 712, 922, 937
HinfI	GANTC	4 cut(s)	592, 771, 1290, 1444
HpaII	CCGG	2 cut(s)	699, 1118
HphI	GGTGA	2 cut(s)	292, 840
Hpy166II	GTNNAC	1 cut(s)	1042
Hpy188I	TCNGA	5 cut(s)	115, 310, 437, 859, 1193
Hpy188III	TCNNGA	6 cut(s)	332, 400, 833, 1378, 1448, 1474
Hpy8I	GTNNAC	1 cut(s)	1042
HpyAV	CCTTC	3 cut(s)	37, 871, 1471
HpyCH4III	ACNGT	2 cut(s)	910, 1124
HpyCH4IV	ACGT	2 cut(s)	1026, 1153
HpyCH4V	TGCA	5 cut(s)	167, 574, 692, 899, 933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	689, 936, 1028
HpyF3I	CTNAG	4 cut(s)	231, 393, 958, 1385
HpySE526I	ACGT	2 cut(s)	1026, 1153
Hsp92II	CATG	9 cut(s)	58, 364, 478, 531, 556, 574, 712, 922, 937
Kzo9I	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
LmnI	GCTCC	4 cut(s)	1014, 1248, 1356, 1433
Lsp1109I	GCAGC	6 cut(s)	473, 917, 931, 1112, 1115, 1408
LweI	GCATC	3 cut(s)	355, 473, 576
MaeI	CTAG	5 cut(s)	383, 431, 668, 1013, 1486
MaeII	ACGT	2 cut(s)	1026, 1153
MaeIII	GTNAC	4 cut(s)	280, 742, 785, 1481
MalI	GATC	7 cut(s)	330, 493, 525, 847, 1195, 1382, 1452
MboI	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
MboII	GAAGA	4 cut(s)	156, 886, 1180, 1351
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	2 cut(s)	523, 1380
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	1226
MluCI	AATT	8 cut(s)	192, 660, 678, 828, 840, 888, 1126, 1305
MluNI	TGGCCA	1 cut(s)	1226
MmeI	TCCRAC	3 cut(s)	402, 415, 1249
MnlI	CCTC	7 cut(s)	759, 1196, 1197, 1256, 1308, 1335, 1385
Mox20I	TGGCCA	1 cut(s)	1226
MscI	TGGCCA	1 cut(s)	1226
MseI	TTAA	3 cut(s)	372, 1182, 1257
MslI	CAYNNNNRTG	2 cut(s)	359, 510
Msp20I	TGGCCA	1 cut(s)	1226
MspI	CCGG	2 cut(s)	699, 1118
MspR9I	CCNGG	2 cut(s)	966, 1118
MunI	CAATTG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	966
MwoI	GCNNNNNNNGC	3 cut(s)	689, 936, 1028
NciI	CCSGG	1 cut(s)	1118
NdeII	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
NlaIII	CATG	9 cut(s)	58, 364, 478, 531, 556, 574, 712, 922, 937
NlaIV	GGNNCC	3 cut(s)	703, 1010, 1429
NmuCI	GTSAC	2 cut(s)	280, 742
NspI	RCATGY	2 cut(s)	58, 922
OliI	CACNNNNGTG	1 cut(s)	510
PasI	CCCWGGG	1 cut(s)	965
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	592, 771, 1290, 1444
PkrI	GCNGC	7 cut(s)	463, 634, 932, 946, 1102, 1105, 1423
Ppu21I	YACGTR	1 cut(s)	1154
PscI	ACATGT	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	1026
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	3 cut(s)	703, 1010, 1429
PspPI	GGNCC	1 cut(s)	251
PsrI	GAACNNNNNNTAC	2 cut(s)	341, 373
PsuI	RGATCY	2 cut(s)	523, 1380
RsaI	GTAC	5 cut(s)	422, 551, 1115, 1152, 1328
RsaNI	GTAC	5 cut(s)	421, 550, 1114, 1151, 1327
RseI	CAYNNNNRTG	2 cut(s)	359, 510
SaqAI	TTAA	3 cut(s)	372, 1182, 1257
SatI	GCNGC	7 cut(s)	462, 633, 931, 945, 1101, 1104, 1422
Sau3AI	GATC	7 cut(s)	328, 491, 523, 845, 1193, 1380, 1450
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	966, 1118
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	355, 473, 576
SfcI	CTRYAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	359, 510
Sse9I	AATT	8 cut(s)	192, 660, 678, 828, 840, 888, 1126, 1305
SsiI	CCGC	5 cut(s)	98, 516, 632, 635, 1053
SspMI	CTAG	5 cut(s)	383, 431, 668, 1013, 1486
StyD4I	CCNGG	2 cut(s)	964, 1116
StyI	CCWWGG	2 cut(s)	213, 382
TaaI	ACNGT	2 cut(s)	910, 1124
TaiI	ACGT	2 cut(s)	1029, 1156
TaqI	TCGA	1 cut(s)	603
TasI	AATT	8 cut(s)	192, 660, 678, 828, 840, 888, 1126, 1305
TatI	WGTACW	2 cut(s)	420, 1326
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	592, 771, 1290, 1444
Tru1I	TTAA	3 cut(s)	372, 1182, 1257
Tru9I	TTAA	3 cut(s)	372, 1182, 1257
TscAI	CASTG	3 cut(s)	43, 985, 1203
TseFI	GTSAC	2 cut(s)	280, 742
TseI	GCWGC	6 cut(s)	461, 930, 944, 1100, 1103, 1421
Tsp45I	GTSAC	2 cut(s)	280, 742
TspDTI	ATGAA	2 cut(s)	887, 1120
TspRI	CASTG	3 cut(s)	43, 985, 1203
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	828
XceI	RCATGY	2 cut(s)	58, 922
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	5 cut(s)	383, 431, 668, 1013, 1486
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.