Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Forward (+)

57352502 .. 57353635

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATTGCATTTGGCATAGCAGAAATTATATTCTCTCAGATTCCAGACTTTGATCAGTTGTGGTGGCTTTCCATTGTTGCTGCAGTCATGTCCTTCACTTACTCCACAATTGGACTTGCCCTTGGAATTGCTAAAGTTGCAGAAACTGGAACAATCATGGGAAGTATGACCGGAATAAGCATTGGCACTGTGACTGAAACCCAAAAGATGTGGAGGAGCTTCCAAGCTCTTGGTGACATAGCTTTTGCCTACTCTTACTCTCTTATTTTGATTGAAATTCAGGACACAGTTAGATCTCCACCATCTGAAGCCAAGACAATGAAGAAGGCCACTATAATTAGTGTTGCAGTGACAACCCTTTTCTACATGCTATGTGGCTGCATGGGCTATGCTGCTTTTGGAGACTTATCCCCTGGAAACTTGCTCACTGGTTTTGGCTTCTATAACCCATATTGGCTCTTAGACATTGCCAACGTTGCTATAGTAGTCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCTTATTTGCCTTTGTTGAGAAAGCAGCAGCGAAAAAGTATCCGGAGAGCGAATTTATCTCAAGAGAAATCAAAATCCCAATTCCCGGTCTTGGCCACTGCAATCTTAACCTCTTCAGATTGGTGTGGAGGACTGCCTTTGTGATTGTGACCACTGTAATCTCTATGCTCCTCCCATTCTTTAATGATGTGGTTGGACTTCTTGGAGCTTTGGGATTCTGGCCATTGACTGTTTACTTCCCAGTTGAGATGTACATTGTGCAGAAGAGGATACCAAAGTGGAGCACAAGATGGCTTTGCCTCCAAATCCTAAGTGTTGCTTGCCTTATAATAACCATAGCCGCTGCTGCTGGCTCAATTGCTGGGGTGATTTCTGACCTCAAGACCTACAAGCCATTCAAGACCAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

311

Amino Acids

34.3

Weight (kDa)

8.44

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 298	1.4e-78	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	1 cut(s)	864
AclI	AACGTT	1 cut(s)	474
AcoI	YGGCCR	2 cut(s)	616, 743
AcsI	RAATTY	2 cut(s)	276, 575
AcuI	CTGAAG	2 cut(s)	327, 622
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	2 cut(s)	608, 614
AgsI	TTSAA	2 cut(s)	275, 922
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	5 cut(s)	219, 227, 242, 731, 930
AluI	AGCT	5 cut(s)	219, 227, 242, 731, 930
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	3 cut(s)	327, 616, 743
ApeKI	GCWGC	7 cut(s)	80, 378, 392, 548, 551, 866, 869
ApoI	RAATTY	2 cut(s)	276, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	245, 901
BaeI	ACNNNNGTAYC	2 cut(s)	785, 818
BalI	TGGCCA	2 cut(s)	618, 745
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	7 cut(s)	67, 365, 379, 560, 563, 853, 856
BccI	CCATC	2 cut(s)	310, 807
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	2 cut(s)	573, 786
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	396
BfmI	CTRYAG	2 cut(s)	81, 480
BfuI	GTATCC	2 cut(s)	573, 786
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	8 cut(s)	81, 379, 393, 549, 552, 864, 867, 870
BlsI	GCNGC	8 cut(s)	82, 380, 394, 550, 553, 865, 868, 871
Bme1390I	CCNGG	2 cut(s)	414, 609
BmrFI	CCNGG	2 cut(s)	414, 609
BmrI	ACTGGG	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	758
BpuEI	CTTGAG	2 cut(s)	568, 887
BpuMI	CCSGG	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	121, 412
BsaWI	WCCGGW	2 cut(s)	170, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 614
Bse1I	ACTGG	3 cut(s)	151, 433, 764
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	121, 412
BseLI	CCNNNNNNNGG	2 cut(s)	608, 614
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	3 cut(s)	151, 433, 764
BseRI	GAGGAG	2 cut(s)	229, 683
BseXI	GCAGC	7 cut(s)	67, 365, 379, 560, 563, 853, 856
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	803
BshFI	GGCC	3 cut(s)	329, 618, 745
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	3 cut(s)	171, 566, 609
BslI	CCNNNNNNNGG	2 cut(s)	608, 614
BsmAI	GTCTC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	329, 618, 745
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp13I	TCCGGA	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	52, 293
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	3 cut(s)	329, 618, 745
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	3 cut(s)	151, 433, 764
BssECI	CCNNGG	2 cut(s)	121, 412
BssMI	GATC	2 cut(s)	52, 293
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	190, 289, 679, 754
Bst6I	CTCTTC	2 cut(s)	641, 782
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	844, 874
BstDEI	CTNAG	3 cut(s)	36, 460, 833
BstKTI	GATC	2 cut(s)	55, 296
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	52, 293
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 384, 476, 869
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	412, 607
BstSFI	CTRYAG	2 cut(s)	81, 480
BstV1I	GCAGC	7 cut(s)	67, 365, 379, 560, 563, 853, 856
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	2 cut(s)	230, 497
BstYI	RGATCY	1 cut(s)	293
BsuI	GTATCC	2 cut(s)	573, 786
BsuRI	GGCC	3 cut(s)	329, 618, 745
BtsI	GCAGTG	2 cut(s)	354, 619
BtsIMutI	CAGTG	5 cut(s)	186, 354, 426, 619, 675
Cac8I	GCNNGC	2 cut(s)	844, 874
CaiI	CAGNNNCTG	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	775
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CviAII	CATG	4 cut(s)	88, 157, 367, 382
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	3 cut(s)	36, 460, 833
DpnI	GATC	2 cut(s)	54, 295
DpnII	GATC	2 cut(s)	52, 293
EaeI	YGGCCR	2 cut(s)	616, 743
Eam1104I	CTCTTC	2 cut(s)	641, 782
EarI	CTCTTC	2 cut(s)	641, 782
Eco130I	CCWWGG	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	327, 622
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	91, 160, 370, 385
FalI	AAGNNNNNCTT	2 cut(s)	826, 858
FatI	CATG	4 cut(s)	87, 156, 366, 381
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	8 cut(s)	81, 379, 393, 549, 552, 864, 867, 870
Fsp4HI	GCNGC	8 cut(s)	81, 379, 393, 549, 552, 864, 867, 870
GluI	GCNGC	8 cut(s)	81, 379, 393, 549, 552, 864, 867, 870
GsaI	CCCAGC	1 cut(s)	888
HaeIII	GGCC	3 cut(s)	329, 618, 745
HapII	CCGG	3 cut(s)	171, 566, 609
Hin1II	CATG	4 cut(s)	91, 160, 370, 385
HinfI	GANTC	2 cut(s)	40, 738
HpaII	CCGG	3 cut(s)	171, 566, 609
HphI	GGTGA	2 cut(s)	245, 901
Hpy166II	GTNNAC	3 cut(s)	490, 514, 757
Hpy188I	TCNGA	4 cut(s)	39, 307, 641, 898
Hpy188III	TCNNGA	6 cut(s)	44, 281, 566, 585, 904, 922
Hpy8I	GTNNAC	3 cut(s)	490, 514, 757
HpyAV	CCTTC	2 cut(s)	103, 319
HpyCH4III	ACNGT	4 cut(s)	190, 289, 679, 754
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	8 cut(s)	8, 83, 140, 347, 381, 503, 624, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 384, 476, 869
HpyF3I	CTNAG	3 cut(s)	36, 460, 833
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	91, 160, 370, 385
Kpn2I	TCCGGA	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	52, 293
LmnI	GCTCC	4 cut(s)	216, 696, 728, 804
Lsp1109I	GCAGC	7 cut(s)	67, 365, 379, 560, 563, 853, 856
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	4 cut(s)	190, 233, 349, 670
MalI	GATC	2 cut(s)	54, 295
MboI	GATC	2 cut(s)	52, 293
MboII	GAAGA	3 cut(s)	334, 628, 799
MfeI	CAATTG	2 cut(s)	108, 879
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	809
MlsI	TGGCCA	2 cut(s)	618, 745
MluCI	AATT	8 cut(s)	24, 108, 126, 276, 336, 575, 603, 879
MluNI	TGGCCA	2 cut(s)	618, 745
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	7 cut(s)	207, 644, 645, 704, 783, 833, 911
Mox20I	TGGCCA	2 cut(s)	618, 745
MroI	TCCGGA	1 cut(s)	565
MscI	TGGCCA	2 cut(s)	618, 745
MseI	TTAA	2 cut(s)	630, 705
Msp20I	TGGCCA	2 cut(s)	618, 745
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	3 cut(s)	171, 566, 609
MspR9I	CCNGG	2 cut(s)	414, 609
MunI	CAATTG	2 cut(s)	108, 879
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	137, 384, 476, 869
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	52, 293
NlaIII	CATG	4 cut(s)	91, 160, 370, 385
NmuCI	GTSAC	4 cut(s)	190, 233, 349, 670
NspI	RCATGY	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	40, 738
PkrI	GCNGC	8 cut(s)	82, 380, 394, 550, 553, 865, 868, 871
PsiI	TTATAA	1 cut(s)	851
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SaqAI	TTAA	2 cut(s)	630, 705
SatI	GCNGC	8 cut(s)	81, 379, 393, 549, 552, 864, 867, 870
Sau3AI	GATC	2 cut(s)	52, 293
ScrFI	CCNGG	2 cut(s)	414, 609
SduI	GDGCHC	1 cut(s)	809
SfcI	CTRYAG	2 cut(s)	81, 480
SmlI	CTYRAG	2 cut(s)	583, 902
SmoI	CTYRAG	2 cut(s)	583, 902
Sse9I	AATT	8 cut(s)	24, 108, 126, 276, 336, 575, 603, 879
SsiI	CCGC	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	412, 607
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	4 cut(s)	190, 289, 679, 754
TaiI	ACGT	1 cut(s)	477
TasI	AATT	8 cut(s)	24, 108, 126, 276, 336, 575, 603, 879
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	2 cut(s)	40, 738
Tru1I	TTAA	2 cut(s)	630, 705
Tru9I	TTAA	2 cut(s)	630, 705
TscAI	CASTG	5 cut(s)	193, 354, 433, 626, 682
TseFI	GTSAC	4 cut(s)	190, 233, 349, 670
TseI	GCWGC	7 cut(s)	80, 378, 392, 548, 551, 866, 869
Tsp45I	GTSAC	4 cut(s)	190, 233, 349, 670
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	5 cut(s)	193, 354, 433, 626, 682
XapI	RAATTY	2 cut(s)	276, 575
XceI	RCATGY	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.