Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015248.1

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Reverse (-)

23853 .. 25286

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015248.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgtttcccaacaacaaagtttgtgatgtctcaatagacataccgccacagggaaactccgaatgctttgatgatgatggacgacccagaagaagtggaacgctttggactgcaagtgctcacataacaacggcagtaattggctctggggttctttccttggcttgggcaatagctcagcttggatggattgctggcccagttgtcattctcttgttctcttgggtgacttactacacttcaactctgctctccgattgctatcgcaacaatgatcctgacaccggaaaaaggaactacacatacatggatgctgttaaatccaacctaggtggtgctaaggtcaagatttgtggagttgttcagtacttgaacctagtcggaagtgccattggatacactatagcagcatctataagcatgatggcaataaagagatcaaactgcttccacaagagtggcgggaaagatccatgccatatcaacagcaacccgtacatgattgctttcggcatcatgcaaatcgtattgtcgcagattccaaacttcgaccagttgtggtggctctccattgttgcggcggttatgtcattcacttactccacaattggactaggacttggaattgccaaagttgcagaaaccggaaccatcatgggaagtatgactggaataagcattggaagtgtgactgaaacccaaaagatgtggaggagattccaagcacttggtaacatagcttttgcctactctttctctcttattttattggaaattcaggacacaattagatcaccaccatctgaagccaagacaatgaagaaggccacaataattagcattgcagtttcaaccgttttctacatgctatgtggctgcatgggctacgctgcttttggagacttagcccctgggaacttgctcactggttttggcttctacaacccttattggctcctagacattgccaacgttgccatagtagtccaccttgttggcggataccaagtcttttgccaaccctttttcgcctttgttgagaaagcagcagccgaaaagtacccggacagtaatttcattacaagagaaatcagggtacgtgtcccctgtttctgccactacaacattaacctcttcagatcagtgtggaggactgcctttgtgattgtggccactctaatatctatgctcctcccattctttaacgatgtcgttggacttctcggtgctttgggattctggcctctcacaatttacttcccaatagagatgtacattgagcagaagaggatacgaaagtggagcaaaaggtggatttgcctccagatcctaagtgttgtttgtctcataataaccatatcatctgctgctggctccattgctggtgtgattcttgatctcaaatccttcaagccattcaagaccagttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

477

Amino Acids

52.65

Weight (kDa)

8.98

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	44, 462, 578, 581, 999
AclI	AACGTT	1 cut(s)	972
AclWI	GGATC	3 cut(s)	269, 464, 1321
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	1 cut(s)	774
AcuI	CTGAAG	2 cut(s)	825, 1120
AfaI	GTAC	5 cut(s)	368, 497, 1061, 1098, 1274
AfiI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
AflIII	ACRYGT	1 cut(s)	1099
AgsI	TTSAA	5 cut(s)	243, 373, 852, 1411, 1420
AjnI	CCWGG	1 cut(s)	910
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	176, 181, 740
AluI	AGCT	3 cut(s)	176, 181, 740
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	34, 894, 1349
AlwI	GGATC	3 cut(s)	269, 464, 1321
AoxI	GGCC	4 cut(s)	196, 825, 1170, 1241
ApeKI	GCWGC	6 cut(s)	407, 876, 890, 1046, 1049, 1367
ApoI	RAATTY	1 cut(s)	774
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	2 cut(s)	238, 786
AvrII	CCTAGG	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	1283, 1316
BalI	TGGCCA	1 cut(s)	1172
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BccI	CCATC	5 cut(s)	71, 180, 418, 659, 808
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	912
BciVI	GTATCC	3 cut(s)	389, 995, 1284
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	3 cut(s)	34, 894, 1349
BfaI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	3 cut(s)	389, 995, 1284
BisI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
BlnI	CCTAGG	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	7 cut(s)	409, 580, 878, 892, 1048, 1051, 1369
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	912, 1064
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	649, 956, 1375
BmrFI	CCNGG	2 cut(s)	912, 1064
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	301, 419, 522
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	1307
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	1064
BsaAI	YACGTR	1 cut(s)	1100
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	159, 328, 910, 911
BsaWI	WCCGGW	2 cut(s)	284, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
Bse1I	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
Bse3DI	GCAATG	3 cut(s)	840, 963, 1377
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	4 cut(s)	159, 328, 910, 911
BseGI	GGATG	2 cut(s)	191, 316
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
BseMI	GCAATG	3 cut(s)	840, 963, 1377
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
BseRI	GAGGAG	2 cut(s)	727, 1181
BseXI	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BshFI	GGCC	4 cut(s)	198, 827, 1172, 1243
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	285, 645, 1064
BslFI	GGGAC	1 cut(s)	1088
BslI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
BsmAI	GTCTC	3 cut(s)	34, 894, 1349
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	4 cut(s)	198, 827, 1172, 1243
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	1272
Bsp143I	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	44, 462, 578, 581, 999
BspANI	GGCC	4 cut(s)	198, 827, 1172, 1243
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	649, 956, 1375
BspPI	GGATC	3 cut(s)	269, 464, 1321
BsrDI	GCAATG	3 cut(s)	840, 963, 1377
BsrGI	TGTACA	1 cut(s)	1272
BsrI	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
BssECI	CCNNGG	4 cut(s)	159, 328, 910, 911
BssMI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
BssT1I	CCWWGG	2 cut(s)	159, 328
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	2 cut(s)	856, 1070
Bst6I	CTCTTC	2 cut(s)	1139, 1280
BstAUI	TGTACA	1 cut(s)	1272
BstBAI	YACGTR	1 cut(s)	1100
BstC8I	GCNNGC	2 cut(s)	196, 1372
BstDEI	CTNAG	4 cut(s)	177, 339, 904, 1331
BstF5I	GGATG	2 cut(s)	191, 316
BstKTI	GATC	7 cut(s)	277, 440, 472, 794, 1142, 1329, 1399
BstMAI	GTCTC	3 cut(s)	34, 894, 1349
BstMBI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	910, 1062
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BstX2I	RGATCY	2 cut(s)	469, 1326
BstXI	CCANNNNNNTGG	3 cut(s)	458, 728, 995
BstYI	RGATCY	2 cut(s)	469, 1326
BsuI	GTATCC	3 cut(s)	389, 995, 1284
BsuRI	GGCC	4 cut(s)	198, 827, 1172, 1243
BtsCI	GGATG	2 cut(s)	191, 316
BtsIMutI	CAGTG	2 cut(s)	924, 1149
Cac8I	GCNNGC	2 cut(s)	196, 1372
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	5 cut(s)	367, 496, 1060, 1097, 1273
CspCI	CAANNNNNGTGG	6 cut(s)	313, 334, 348, 369, 689, 724
CviAII	CATG	8 cut(s)	307, 421, 474, 499, 517, 655, 865, 880
CviQI	GTAC	5 cut(s)	367, 496, 1060, 1097, 1273
DdeI	CTNAG	4 cut(s)	177, 339, 904, 1331
DpnI	GATC	7 cut(s)	276, 439, 471, 793, 1141, 1328, 1398
DpnII	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	2 cut(s)	1139, 1280
EarI	CTCTTC	2 cut(s)	1139, 1280
EciI	GGCGGA	1 cut(s)	1014
Eco130I	CCWWGG	2 cut(s)	159, 328
Eco57I	CTGAAG	2 cut(s)	825, 1120
EcoRII	CCWGG	1 cut(s)	910
EcoT14I	CCWWGG	2 cut(s)	159, 328
ErhI	CCWWGG	2 cut(s)	159, 328
FaeI	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
FaqI	GGGAC	1 cut(s)	1088
FatI	CATG	8 cut(s)	306, 420, 473, 498, 516, 654, 864, 879
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
FokI	GGATG	2 cut(s)	198, 323
Fsp4HI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
FspBI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
GluI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
GsuI	CTGGAG	1 cut(s)	1307
HaeIII	GGCC	4 cut(s)	198, 827, 1172, 1243
HapII	CCGG	3 cut(s)	285, 645, 1064
Hin1II	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
HinfI	GANTC	4 cut(s)	538, 717, 1236, 1390
HpaII	CCGG	3 cut(s)	285, 645, 1064
HphI	GGTGA	2 cut(s)	238, 786
Hpy166II	GTNNAC	1 cut(s)	988
Hpy188I	TCNGA	5 cut(s)	61, 256, 383, 805, 1139
Hpy188III	TCNNGA	6 cut(s)	278, 346, 779, 1324, 1394, 1420
Hpy8I	GTNNAC	1 cut(s)	988
HpyAV	CCTTC	2 cut(s)	817, 1417
HpyCH4III	ACNGT	2 cut(s)	856, 1070
HpyCH4IV	ACGT	2 cut(s)	972, 1099
HpyCH4V	TGCA	5 cut(s)	113, 520, 638, 845, 879
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
HpyF3I	CTNAG	4 cut(s)	177, 339, 904, 1331
HpySE526I	ACGT	2 cut(s)	972, 1099
Hsp92II	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
Kzo9I	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
LmnI	GCTCC	4 cut(s)	960, 1194, 1302, 1379
Lsp1109I	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
LweI	GCATC	3 cut(s)	301, 419, 522
MaeI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
MaeII	ACGT	2 cut(s)	972, 1099
MaeIII	GTNAC	4 cut(s)	226, 688, 731, 1427
MalI	GATC	7 cut(s)	276, 439, 471, 793, 1141, 1328, 1398
MboI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
MboII	GAAGA	4 cut(s)	102, 832, 1126, 1297
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	469, 1326
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	1172
MluCI	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
MluNI	TGGCCA	1 cut(s)	1172
MmeI	TCCRAC	3 cut(s)	348, 361, 1195
MnlI	CCTC	7 cut(s)	705, 1142, 1143, 1202, 1254, 1281, 1331
Mox20I	TGGCCA	1 cut(s)	1172
MscI	TGGCCA	1 cut(s)	1172
MseI	TTAA	3 cut(s)	318, 1128, 1203
MslI	CAYNNNNRTG	2 cut(s)	305, 456
Msp20I	TGGCCA	1 cut(s)	1172
MspI	CCGG	3 cut(s)	285, 645, 1064
MspR9I	CCNGG	2 cut(s)	912, 1064
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
NciI	CCSGG	1 cut(s)	1064
NdeII	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
NlaIII	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
NlaIV	GGNNCC	3 cut(s)	649, 956, 1375
NmuCI	GTSAC	2 cut(s)	226, 688
NspI	RCATGY	1 cut(s)	868
OliI	CACNNNNGTG	1 cut(s)	456
PasI	CCCWGGG	1 cut(s)	911
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	4 cut(s)	538, 717, 1236, 1390
PkrI	GCNGC	7 cut(s)	409, 580, 878, 892, 1048, 1051, 1369
Ppu21I	YACGTR	1 cut(s)	1100
Psp1406I	AACGTT	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	3 cut(s)	649, 956, 1375
PspPI	GGNCC	1 cut(s)	197
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PsuI	RGATCY	2 cut(s)	469, 1326
RsaI	GTAC	5 cut(s)	368, 497, 1061, 1098, 1274
RsaNI	GTAC	5 cut(s)	367, 496, 1060, 1097, 1273
RseI	CAYNNNNRTG	2 cut(s)	305, 456
SaqAI	TTAA	3 cut(s)	318, 1128, 1203
SatI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
Sau3AI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	912, 1064
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	3 cut(s)	301, 419, 522
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	2 cut(s)	305, 456
Sse9I	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
SsiI	CCGC	5 cut(s)	44, 462, 578, 581, 999
SspMI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
StyD4I	CCNGG	2 cut(s)	910, 1062
StyI	CCWWGG	2 cut(s)	159, 328
TaaI	ACNGT	2 cut(s)	856, 1070
TaiI	ACGT	2 cut(s)	975, 1102
TaqI	TCGA	1 cut(s)	549
TasI	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
TatI	WGTACW	2 cut(s)	366, 1272
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	538, 717, 1236, 1390
Tru1I	TTAA	3 cut(s)	318, 1128, 1203
Tru9I	TTAA	3 cut(s)	318, 1128, 1203
TscAI	CASTG	2 cut(s)	931, 1149
TseFI	GTSAC	2 cut(s)	226, 688
TseI	GCWGC	6 cut(s)	407, 876, 890, 1046, 1049, 1367
Tsp45I	GTSAC	2 cut(s)	226, 688
TspDTI	ATGAA	2 cut(s)	833, 1066
TspRI	CASTG	2 cut(s)	931, 1149
XapI	RAATTY	1 cut(s)	774
XceI	RCATGY	1 cut(s)	868
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.