Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Reverse (-)

40870853 .. 40877295

Gene Structure 6443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGTGTCTTGATGTTTTCATTAGGGTTCATAAGGAAGAGTTAAAGTCCTCTGATCAACATTTGATAAAAGCACCAAAACTGCTAGAGAAAAGACATTTGGAGACATTTGTTGAATGGTTACAAGCTAAGAAGATGGAAAGAGTGAAAAAAAGAGGCAGAACCGGATATACAGAAGATGCAAGTGCTAGACAGCCAGATGATTGTTCAGAATCAAATCCTGAAGTTGAGCTTACTCCTAATCTTGCTAACAATGGAAAAAAGGTTGTAAGAGGTAAAACTACATTACAGGTCATTCCAACGGGGGAATCTAATCGACAATCTGTTGAGTGGAATGAAAGAGGACAACCTGTTGGGGATTTTTCAAAAAGGTTTAGCTCAACTATTGGGGTTTTAGTAAGAGAGAGTATCCCAATCAACATACAAAATTGGCCTGCTGTGGATGGTGTAACTAAGAATAGTGTCTGGGGTCTTTTGATGCAAAAATATGTAGTGGATCTGACTCATAAGACATTTATCTTACAACAAATGGGAAGGCTGTGGAGAGCTTGGAAATCTGATCTCTCGACTAACATCAAAAGAATTGTAGATACTAGATGCACTAAGTCAGAAACTACAAGGCTACTTGGCATTCTGAAGCCCTCTGATGTGCCACAAAAAGAGTGGGATGAGTTCGTGGCAGAACGTAGTTCAGAGTCATGGCAAGAAAAGAGTGAGAAAATGAAAAAAATAAGAGCAAATCAGACTTTAACACACACAATGAGCCGAAAAGGTTATGCAAGGTTGGAAGATGAATATAAAAAGGAAAATCCTGGAAAATCATTGAGTAGGGCAGAATTATGGATTAAAGGACACGAGCAGAAGAAGTCAAAAAATGAGCATGTGGCTGCCAAAATTATTGAAATACAAGCTAAACTTGATGCGCAACCACCTAGTGAAGGGCGTATTCCGATAAAATATGATACACTAAGTCAGGTTCTTGGTAAGGAGCGTCCTGGCCGTGTTAGAGGTTTGGGATCAGGGGTTACACCTTCAAAGGTAGATGCTCAACTAGAAAGTAGCTCATGGAAACAAACATTAGAGAATAAAATTGATGCAATGAGTGAGCGCACAAAGATTCTGGAGGATATAATTTTAAAGATGAGCCAAAATGGGAATGGTGGTGGTGGTGGTGGTGATGGTGAAAATATGCATGCTGATTCTGTTGGTACTCCACAAAATGGGCATGGATATGGTGAAGCAGGAAGTATGAACCTTGGTACTGGAAATTCTAAGTCAGAACAAGATAGCACCAAACTTTCTATTAACGATAAGTGCAAGTTGCTAAACTGGGAGGGCACAAGTGAAGTAGTGGCTAGAGGACACATTTCTGATATTAACCCTGAATCAAAAGTGCATGGCTACAAACTTGGACCTGACTGTTATAGAATTGCTATTGAGGAAGTTGTCATGCTTGATGCTGTATTTTATCGAAGTCAGCCCGAATTTGTGACTATGGAAGATGCACTTGGAAGTACTGTTGCTTGGCCGATTAAGTACATTGTCTGTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

517

Amino Acids

58.06

Weight (kDa)

8.82

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	219 - 343	6.3e-18	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	432 - 514	1.6e-10	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	921
AccB7I	CCANNNNNTGG	1 cut(s)	1217
AclWI	GGATC	2 cut(s)	501, 1021
AcoI	YGGCCR	2 cut(s)	994, 1523
AcsI	RAATTY	2 cut(s)	1264, 1481
AcuI	CTGAAG	2 cut(s)	240, 653
AdeI	CACNNNGTG	1 cut(s)	932
AfaI	GTAC	4 cut(s)	1207, 1258, 1513, 1535
AfiI	CCNNNNNNNGG	2 cut(s)	935, 1217
AgsI	TTSAA	4 cut(s)	113, 363, 899, 1032
AjnI	CCWGG	2 cut(s)	808, 991
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 1488, 1520
AluBI	AGCT	6 cut(s)	125, 229, 375, 545, 908, 1059
AluI	AGCT	6 cut(s)	125, 229, 375, 545, 908, 1059
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	501, 1021
AoxI	GGCC	3 cut(s)	428, 994, 1523
ApeKI	GCWGC	1 cut(s)	884
ApoI	RAATTY	2 cut(s)	1264, 1481
AspLEI	GCGC	2 cut(s)	922, 1107
AspS9I	GGNCC	1 cut(s)	1409
AsuHPI	GGTGA	3 cut(s)	1184, 1190, 1244
AvaII	GGWCC	1 cut(s)	1409
BaeGI	GKGCMC	1 cut(s)	1337
BauI	CACGAG	1 cut(s)	851
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	3 cut(s)	127, 434, 1169
BceAI	ACGGC	1 cut(s)	981
BciT130I	CCWGG	2 cut(s)	810, 993
BciVI	GTATCC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	6 cut(s)	83, 186, 591, 930, 1049, 1353
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	886
BmcAI	AGTACT	1 cut(s)	1513
Bme1390I	CCNGG	2 cut(s)	810, 993
Bme18I	GGWCC	1 cut(s)	1409
BmgT120I	GGNCC	1 cut(s)	1409
BmrFI	CCNGG	2 cut(s)	810, 993
BmrI	ACTGGG	1 cut(s)	1336
BmsI	GCATC	8 cut(s)	166, 465, 584, 907, 1030, 1081, 1444, 1489
BmuI	ACTGGG	1 cut(s)	1336
BpmI	CTGGAG	1 cut(s)	1139
BsaJI	CCNNGG	1 cut(s)	1252
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	935, 1217
Bse1I	ACTGG	2 cut(s)	1264, 1331
Bse3DI	GCAATG	1 cut(s)	1101
BseBI	CCWGG	2 cut(s)	810, 993
BseDI	CCNNGG	1 cut(s)	1252
BseGI	GGATG	2 cut(s)	445, 670
BseLI	CCNNNNNNNGG	2 cut(s)	935, 1217
BseMI	GCAATG	1 cut(s)	1101
BseNI	ACTGG	2 cut(s)	1264, 1331
BseSI	GKGCMC	1 cut(s)	1337
BseXI	GCAGC	1 cut(s)	871
BshFI	GGCC	3 cut(s)	430, 996, 1525
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	935, 1217
BsmAI	GTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	3 cut(s)	430, 996, 1525
Bsp1286I	GDGCHC	1 cut(s)	1337
Bsp143I	GATC	4 cut(s)	52, 493, 556, 1013
BspANI	GGCC	3 cut(s)	430, 996, 1525
BspPI	GGATC	2 cut(s)	501, 1021
BsrDI	GCAATG	1 cut(s)	1101
BsrI	ACTGG	2 cut(s)	1264, 1331
BssECI	CCNNGG	1 cut(s)	1252
BssMI	GATC	4 cut(s)	52, 493, 556, 1013
BssSI	CACGAG	1 cut(s)	851
BssT1I	CCWWGG	1 cut(s)	1252
Bst2BI	CACGAG	1 cut(s)	851
Bst2UI	CCWGG	2 cut(s)	810, 993
Bst4CI	ACNGT	2 cut(s)	1418, 1516
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	432, 1191
BstDEI	CTNAG	5 cut(s)	126, 450, 600, 965, 1269
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	2 cut(s)	445, 670
BstHHI	GCGC	2 cut(s)	922, 1107
BstKTI	GATC	4 cut(s)	55, 496, 559, 1016
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	52, 493, 556, 1013
BstNI	CCWGG	2 cut(s)	810, 993
BstNSI	RCATGY	2 cut(s)	881, 1193
BstSCI	CCNGG	2 cut(s)	808, 991
BstSLI	GKGCMC	1 cut(s)	1337
BstV1I	GCAGC	1 cut(s)	871
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	430, 996, 1525
BtsCI	GGATG	2 cut(s)	445, 670
Cac8I	GCNNGC	2 cut(s)	432, 1191
CfoI	GCGC	2 cut(s)	922, 1107
Cfr13I	GGNCC	1 cut(s)	1409
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	4 cut(s)	1206, 1257, 1512, 1534
CspCI	CAANNNNNGTGG	2 cut(s)	641, 676
CviAII	CATG	7 cut(s)	696, 878, 1062, 1190, 1223, 1394, 1447
CviQI	GTAC	4 cut(s)	1206, 1257, 1512, 1534
DdeI	CTNAG	5 cut(s)	126, 450, 600, 965, 1269
DpnI	GATC	4 cut(s)	54, 495, 558, 1015
DpnII	GATC	4 cut(s)	52, 493, 556, 1013
DraI	TTTAAA	1 cut(s)	1134
DraIII	CACNNNGTG	1 cut(s)	932
EaeI	YGGCCR	2 cut(s)	994, 1523
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	1252
Eco47I	GGWCC	1 cut(s)	1409
Eco57I	CTGAAG	2 cut(s)	240, 653
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoRII	CCWGG	2 cut(s)	808, 991
EcoT14I	CCWWGG	1 cut(s)	1252
EcoT22I	ATGCAT	1 cut(s)	1191
ErhI	CCWWGG	1 cut(s)	1252
FaeI	CATG	7 cut(s)	699, 881, 1065, 1193, 1226, 1397, 1450
FalI	AAGNNNNNCTT	6 cut(s)	213, 245, 897, 929, 1488, 1520
FatI	CATG	7 cut(s)	695, 877, 1061, 1189, 1222, 1393, 1446
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	885
FokI	GGATG	2 cut(s)	452, 677
Fsp4HI	GCNGC	1 cut(s)	885
FspBI	CTAG	6 cut(s)	83, 186, 591, 930, 1049, 1353
FspI	TGCGCA	1 cut(s)	921
GlaI	GCGC	2 cut(s)	921, 1106
GluI	GCNGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	1139
HaeIII	GGCC	3 cut(s)	430, 996, 1525
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	2 cut(s)	922, 1107
Hin1II	CATG	7 cut(s)	699, 881, 1065, 1193, 1226, 1397, 1450
Hin6I	GCGC	2 cut(s)	920, 1105
HinP1I	GCGC	2 cut(s)	920, 1105
HinfI	GANTC	7 cut(s)	209, 305, 499, 692, 1114, 1196, 1382
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	1184, 1190, 1244
Hpy188III	TCNNGA	4 cut(s)	8, 218, 562, 1118
HpyAV	CCTTC	3 cut(s)	525, 929, 1038
HpyCH4III	ACNGT	2 cut(s)	1418, 1516
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	9 cut(s)	179, 478, 597, 776, 1094, 1189, 1314, 1393, 1502
HpyF3I	CTNAG	5 cut(s)	126, 450, 600, 965, 1269
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	7 cut(s)	699, 881, 1065, 1193, 1226, 1397, 1450
HspAI	GCGC	2 cut(s)	920, 1105
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 493, 556, 1013
LmnI	GCTCC	1 cut(s)	985
Lsp1109I	GCAGC	1 cut(s)	871
LweI	GCATC	8 cut(s)	166, 465, 584, 907, 1030, 1081, 1444, 1489
MaeI	CTAG	6 cut(s)	83, 186, 591, 930, 1049, 1353
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	5 cut(s)	117, 445, 1021, 1486, 1544
MalI	GATC	4 cut(s)	54, 495, 558, 1015
MboI	GATC	4 cut(s)	52, 493, 556, 1013
MboII	GAAGA	6 cut(s)	47, 142, 185, 797, 871, 1508
MfeI	CAATTG	1 cut(s)	1549
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	1337
MlyI	GAGTC	2 cut(s)	493, 701
MmeI	TCCRAC	2 cut(s)	320, 762
Mph1103I	ATGCAT	1 cut(s)	1191
MseI	TTAA	7 cut(s)	41, 746, 843, 1133, 1302, 1374, 1530
MslI	CAYNNNNRTG	1 cut(s)	1227
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	810, 993
MunI	CAATTG	1 cut(s)	1549
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	810, 993
NdeII	GATC	4 cut(s)	52, 493, 556, 1013
NlaIII	CATG	7 cut(s)	699, 881, 1065, 1193, 1226, 1397, 1450
NmuCI	GTSAC	2 cut(s)	1486, 1544
NsbI	TGCGCA	1 cut(s)	921
NsiI	ATGCAT	1 cut(s)	1191
NspI	RCATGY	2 cut(s)	881, 1193
PaeI	GCATGC	1 cut(s)	1193
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	5 cut(s)	209, 305, 1114, 1196, 1382
PflMI	CCANNNNNTGG	1 cut(s)	1217
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	886
PleI	GAGTC	2 cut(s)	493, 700
PpsI	GAGTC	2 cut(s)	493, 700
Psp6I	CCWGG	2 cut(s)	808, 991
PspGI	CCWGG	2 cut(s)	808, 991
PspPI	GGNCC	1 cut(s)	1409
PsrI	GAACNNNNNNTAC	2 cut(s)	151, 183
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	4 cut(s)	1207, 1258, 1513, 1535
RsaNI	GTAC	4 cut(s)	1206, 1257, 1512, 1534
RseI	CAYNNNNRTG	1 cut(s)	1227
SaqAI	TTAA	7 cut(s)	41, 746, 843, 1133, 1302, 1374, 1530
SatI	GCNGC	1 cut(s)	885
Sau3AI	GATC	4 cut(s)	52, 493, 556, 1013
Sau96I	GGNCC	1 cut(s)	1409
ScaI	AGTACT	1 cut(s)	1513
SchI	GAGTC	2 cut(s)	493, 701
ScrFI	CCNGG	2 cut(s)	810, 993
SduI	GDGCHC	1 cut(s)	1337
SfaNI	GCATC	8 cut(s)	166, 465, 584, 907, 1030, 1081, 1444, 1489
SinI	GGWCC	1 cut(s)	1409
SmiMI	CAYNNNNRTG	1 cut(s)	1227
SphI	GCATGC	1 cut(s)	1193
SspMI	CTAG	6 cut(s)	83, 186, 591, 930, 1049, 1353
StyD4I	CCNGG	2 cut(s)	808, 991
StyI	CCWWGG	1 cut(s)	1252
TaaI	ACNGT	2 cut(s)	1418, 1516
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	3 cut(s)	313, 563, 1468
TatI	WGTACW	2 cut(s)	1511, 1533
TfiI	GAWTC	5 cut(s)	209, 305, 1114, 1196, 1382
Tru1I	TTAA	7 cut(s)	41, 746, 843, 1133, 1302, 1374, 1530
Tru9I	TTAA	7 cut(s)	41, 746, 843, 1133, 1302, 1374, 1530
TseFI	GTSAC	2 cut(s)	1486, 1544
TseI	GCWGC	1 cut(s)	884
Tsp45I	GTSAC	2 cut(s)	1486, 1544
TspDTI	ATGAA	6 cut(s)	7, 17, 348, 734, 804, 1262
Van91I	CCANNNNNTGG	1 cut(s)	1217
VpaK11BI	GGWCC	1 cut(s)	1409
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	1264, 1481
XceI	RCATGY	2 cut(s)	881, 1193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	657, 1151
XspI	CTAG	6 cut(s)	83, 186, 591, 930, 1049, 1353
ZrmI	AGTACT	1 cut(s)	1513
Zsp2I	ATGCAT	1 cut(s)	1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.