Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012148.1

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Reverse (-)

29360 .. 36104

Gene Structure 6745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012148.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

atgcttgctggcatgacggggatgatggatggatggtggaatggccaacacttgcttggaacggcgagcacgccaacggtgattaggagaggtggtgatgctcgccgaaaactggagctgcgatcagggaggaggaaaagaaggctaaagagcagagaggaggaagaggaagaagagccggtgaccggattccggcgaaagttggccggattccggcggccggtgaccggattcctgcggccggtgacgggctccggcggccgtgataacaagaagcacatgtttcccaacaacaaagtttgtgatgtctcaatagacataccgccacagggaaactccgaatgctttgatgatgatggacgacccagaagaagtggaacgctttggactgcaagtgctcacataacaacggcagtaattggctctggggttctttccttggcttgggcaatagctcagcttggatggattgctggcccagttgtcattctcttgttctcttgggtgacttactacacttcaactctgctctccgattgctatcgcaacaatgatcctgacaccggaaaaaggaactacacatacatggatgctgttaaatccaacctaggtggtgctaaggtcaagatttgtggagttgttcagtacttgaacctagtcggaagtgccattggatacactatagcagcatctataagcatgatggcaataaagagatcaaactgcttccacaagagtggcgggaaagatccatgccatatcaacagcaacccgtacatgattgctttcggcatcatgcaaatcgtattgtcgcagattccaaacttcgaccagttgtggtggctctccattgttgcggcggttatgtcattcacttactccacaattggactaggacttggaattgccaaagttgcagaaaccggaaccatcatgggaagtatgactggaataagcattggaagtgtgactgaaacccaaaagatgtggaggagattccaagcacttggtaacatagcttttgcctactctttctctcttattttattggaaattcaggacacaattagatcaccaccatctgaagccaagacaatgaagaaggccacaataattagcattgcagtttcaaccgttttctacatgctatgtggctgcatgggctacgctgcttttggagacttagcccctgggaacttgctcactggttttggcttctacaacccttattggctcctagacattgccaacgttgccatagtagtccaccttgttggcggataccaagtcttttgccaaccctttttcgcctttgttgagaaagcagcagccgaaaagtacccggacagtaatttcattacaagagaaatcagggtacgtgtcccctgtttctgccactacaacattaacctcttcagatcagtgtggaggactgcctttgtgattgtggccactctaatatctatgctcctcccattctttaacgatgtcgttggacttctcggtgctttgggattctggcctctcacaatttacttcccaatagagatgtacattgagcagaagaggatacgaaagtggagcaaaaggtggatttgcctccagatcctaagtgttgtttgtctcataataaccatatcatctgctgctggctccattgctggtgtgattcttgatctcaaatccttcaagccattcaagaccagttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

570

Amino Acids

63.21

Weight (kDa)

9.49

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	217, 238, 258, 323, 741, 857, 860, 1278
AclI	AACGTT	1 cut(s)	1251
AclWI	GGATC	3 cut(s)	548, 743, 1600
AcoI	YGGCCR	6 cut(s)	43, 204, 218, 239, 259, 1449
AcsI	RAATTY	1 cut(s)	1053
AcuI	CTGAAG	2 cut(s)	1104, 1399
AfaI	GTAC	5 cut(s)	647, 776, 1340, 1377, 1553
AflIII	ACRYGT	2 cut(s)	279, 1378
AgsI	TTSAA	5 cut(s)	522, 652, 1131, 1690, 1699
AjnI	CCWGG	1 cut(s)	1189
AleI	CACNNNNGTG	1 cut(s)	735
AluBI	AGCT	4 cut(s)	118, 455, 460, 1019
AluI	AGCT	4 cut(s)	118, 455, 460, 1019
Alw21I	GWGCWC	2 cut(s)	71, 400
Alw26I	GTCTC	3 cut(s)	313, 1173, 1628
AlwI	GGATC	3 cut(s)	548, 743, 1600
AoxI	GGCC	9 cut(s)	43, 204, 218, 239, 259, 475, 1104, 1449, 1520
ApeKI	GCWGC	7 cut(s)	118, 686, 1155, 1169, 1325, 1328, 1646
ApoI	RAATTY	1 cut(s)	1053
AspA2I	CCTAGG	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	1343
AsuHPI	GGTGA	7 cut(s)	91, 107, 193, 235, 256, 517, 1065
AvrII	CCTAGG	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	1562, 1595
BalI	TGGCCA	2 cut(s)	45, 1451
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	71, 400
BbvI	GCAGC	7 cut(s)	105, 698, 1142, 1156, 1337, 1340, 1633
BccI	CCATC	8 cut(s)	19, 23, 27, 350, 459, 697, 938, 1087
BceAI	ACGGC	3 cut(s)	78, 246, 426
BciT130I	CCWGG	1 cut(s)	1191
BciVI	GTATCC	3 cut(s)	668, 1274, 1563
BcnI	CCSGG	1 cut(s)	1343
BcoDI	GTCTC	3 cut(s)	313, 1173, 1628
BfaI	CTAG	5 cut(s)	608, 656, 893, 1238, 1711
BfmI	CTRYAG	1 cut(s)	681
BfuI	GTATCC	3 cut(s)	668, 1274, 1563
BlnI	CCTAGG	1 cut(s)	607
BlpI	GCTNAGC	1 cut(s)	456
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	1191, 1343
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	4 cut(s)	253, 928, 1235, 1654
BmrFI	CCNGG	2 cut(s)	1191, 1343
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	4 cut(s)	88, 580, 698, 801
BmuI	ACTGGG	1 cut(s)	473
BpmI	CTGGAG	2 cut(s)	134, 1586
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	1343
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	438, 607, 1189, 1190
BsaWI	WCCGGW	4 cut(s)	185, 227, 563, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse118I	RCCGGY	3 cut(s)	178, 220, 241
Bse1I	ACTGG	6 cut(s)	117, 479, 832, 952, 1210, 1704
Bse3DI	GCAATG	3 cut(s)	1119, 1242, 1656
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	1191
BseDI	CCNNGG	4 cut(s)	438, 607, 1189, 1190
BseGI	GGATG	5 cut(s)	27, 34, 38, 470, 595
BseJI	GATNNNNATC	1 cut(s)	540
BseMI	GCAATG	3 cut(s)	1119, 1242, 1656
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	6 cut(s)	117, 479, 832, 952, 1210, 1704
BseRI	GAGGAG	4 cut(s)	145, 173, 1006, 1460
BseX3I	CGGCCG	3 cut(s)	218, 239, 259
BseXI	GCAGC	7 cut(s)	105, 698, 1142, 1156, 1337, 1340, 1633
Bsh1285I	CGRYCG	3 cut(s)	221, 242, 262
BshFI	GGCC	9 cut(s)	45, 206, 220, 241, 261, 477, 1106, 1451, 1522
BsiEI	CGRYCG	3 cut(s)	221, 242, 262
BsiHKAI	GWGCWC	2 cut(s)	71, 400
BslFI	GGGAC	1 cut(s)	1367
BsmAI	GTCTC	3 cut(s)	313, 1173, 1628
BsmFI	GGGAC	1 cut(s)	1367
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	9 cut(s)	45, 206, 220, 241, 261, 477, 1106, 1451, 1522
Bsp1286I	GDGCHC	3 cut(s)	71, 254, 400
Bsp1407I	TGTACA	1 cut(s)	1551
Bsp143I	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	8 cut(s)	217, 238, 258, 323, 741, 857, 860, 1278
BspANI	GGCC	9 cut(s)	45, 206, 220, 241, 261, 477, 1106, 1451, 1522
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	253, 928, 1235, 1654
BspPI	GGATC	3 cut(s)	548, 743, 1600
BspQI	GCTCTTC	1 cut(s)	168
BsrDI	GCAATG	3 cut(s)	1119, 1242, 1656
BsrFI	RCCGGY	3 cut(s)	178, 220, 241
BsrGI	TGTACA	1 cut(s)	1551
BsrI	ACTGG	6 cut(s)	117, 479, 832, 952, 1210, 1704
BssAI	RCCGGY	3 cut(s)	178, 220, 241
BssECI	CCNNGG	4 cut(s)	438, 607, 1189, 1190
BssMI	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
BssT1I	CCWWGG	2 cut(s)	438, 607
Bst2UI	CCWGG	1 cut(s)	1191
Bst4CI	ACNGT	3 cut(s)	79, 1135, 1349
Bst6I	CTCTTC	4 cut(s)	159, 168, 1418, 1559
BstAUI	TGTACA	1 cut(s)	1551
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	7 cut(s)	6, 10, 67, 71, 103, 475, 1651
BstDEI	CTNAG	4 cut(s)	456, 618, 1183, 1610
BstEII	GGTNACC	2 cut(s)	181, 223
BstF5I	GGATG	5 cut(s)	27, 34, 38, 470, 595
BstKTI	GATC	8 cut(s)	125, 556, 719, 751, 1073, 1421, 1608, 1678
BstMAI	GTCTC	3 cut(s)	313, 1173, 1628
BstMBI	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
BstMCI	CGRYCG	3 cut(s)	221, 242, 262
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 914, 1161, 1253
BstNI	CCWGG	1 cut(s)	1191
BstNSI	RCATGY	2 cut(s)	283, 1147
BstPI	GGTNACC	2 cut(s)	181, 223
BstSCI	CCNGG	2 cut(s)	1189, 1341
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	7 cut(s)	105, 698, 1142, 1156, 1337, 1340, 1633
BstX2I	RGATCY	2 cut(s)	748, 1605
BstXI	CCANNNNNNTGG	3 cut(s)	737, 1007, 1274
BstYI	RGATCY	2 cut(s)	748, 1605
BstZI	CGGCCG	3 cut(s)	218, 239, 259
BsuI	GTATCC	3 cut(s)	668, 1274, 1563
BsuRI	GGCC	9 cut(s)	45, 206, 220, 241, 261, 477, 1106, 1451, 1522
BtsCI	GGATG	5 cut(s)	27, 34, 38, 470, 595
BtsIMutI	CAGTG	2 cut(s)	1203, 1428
Cac8I	GCNNGC	7 cut(s)	6, 10, 67, 71, 103, 475, 1651
Cfr10I	RCCGGY	3 cut(s)	178, 220, 241
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	5 cut(s)	646, 775, 1339, 1376, 1552
CspCI	CAANNNNNGTGG	6 cut(s)	592, 613, 627, 648, 968, 1003
CviQI	GTAC	5 cut(s)	646, 775, 1339, 1376, 1552
DdeI	CTNAG	4 cut(s)	456, 618, 1183, 1610
DpnI	GATC	8 cut(s)	124, 555, 718, 750, 1072, 1420, 1607, 1677
DpnII	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
EaeI	YGGCCR	6 cut(s)	43, 204, 218, 239, 259, 1449
EagI	CGGCCG	3 cut(s)	218, 239, 259
Eam1104I	CTCTTC	4 cut(s)	159, 168, 1418, 1559
EarI	CTCTTC	4 cut(s)	159, 168, 1418, 1559
EciI	GGCGGA	1 cut(s)	1293
EclXI	CGGCCG	3 cut(s)	218, 239, 259
Eco130I	CCWWGG	2 cut(s)	438, 607
Eco24I	GRGCYC	1 cut(s)	254
Eco52I	CGGCCG	3 cut(s)	218, 239, 259
Eco57I	CTGAAG	2 cut(s)	1104, 1399
Eco91I	GGTNACC	2 cut(s)	181, 223
EcoO65I	GGTNACC	2 cut(s)	181, 223
EcoRII	CCWGG	1 cut(s)	1189
EcoT14I	CCWWGG	2 cut(s)	438, 607
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	438, 607
FaqI	GGGAC	1 cut(s)	1367
FauI	CCCGC	1 cut(s)	734
FokI	GGATG	5 cut(s)	34, 41, 45, 477, 602
FriOI	GRGCYC	1 cut(s)	254
FspBI	CTAG	5 cut(s)	608, 656, 893, 1238, 1711
GsuI	CTGGAG	2 cut(s)	134, 1586
HaeIII	GGCC	9 cut(s)	45, 206, 220, 241, 261, 477, 1106, 1451, 1522
HinfI	GANTC	7 cut(s)	189, 210, 231, 817, 996, 1515, 1669
HphI	GGTGA	7 cut(s)	91, 107, 193, 235, 256, 517, 1065
Hpy166II	GTNNAC	1 cut(s)	1267
Hpy188I	TCNGA	5 cut(s)	340, 535, 662, 1084, 1418
Hpy188III	TCNNGA	6 cut(s)	557, 625, 1058, 1603, 1673, 1699
Hpy8I	GTNNAC	1 cut(s)	1267
HpyAV	CCTTC	3 cut(s)	135, 1096, 1696
HpyCH4III	ACNGT	3 cut(s)	79, 1135, 1349
HpyCH4IV	ACGT	2 cut(s)	1251, 1378
HpyCH4V	TGCA	5 cut(s)	392, 799, 917, 1124, 1158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 914, 1161, 1253
HpyF3I	CTNAG	4 cut(s)	456, 618, 1183, 1610
HpySE526I	ACGT	2 cut(s)	1251, 1378
Kzo9I	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	6 cut(s)	115, 257, 1239, 1473, 1581, 1658
Lsp1109I	GCAGC	7 cut(s)	105, 698, 1142, 1156, 1337, 1340, 1633
LweI	GCATC	4 cut(s)	88, 580, 698, 801
MaeI	CTAG	5 cut(s)	608, 656, 893, 1238, 1711
MaeII	ACGT	2 cut(s)	1251, 1378
MaeIII	GTNAC	7 cut(s)	181, 223, 244, 505, 967, 1010, 1706
MalI	GATC	8 cut(s)	124, 555, 718, 750, 1072, 1420, 1607, 1677
MboI	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
MboII	GAAGA	7 cut(s)	176, 182, 185, 381, 1111, 1405, 1576
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	2 cut(s)	748, 1605
MhlI	GDGCHC	3 cut(s)	71, 254, 400
MlsI	TGGCCA	2 cut(s)	45, 1451
MluCI	AATT	8 cut(s)	417, 885, 903, 1053, 1065, 1113, 1351, 1530
MluNI	TGGCCA	2 cut(s)	45, 1451
MmeI	TCCRAC	3 cut(s)	627, 640, 1474
Mox20I	TGGCCA	2 cut(s)	45, 1451
MscI	TGGCCA	2 cut(s)	45, 1451
MseI	TTAA	3 cut(s)	597, 1407, 1482
MslI	CAYNNNNRTG	2 cut(s)	584, 735
Msp20I	TGGCCA	2 cut(s)	45, 1451
MspR9I	CCNGG	2 cut(s)	1191, 1343
MunI	CAATTG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	4 cut(s)	258, 914, 1161, 1253
NciI	CCSGG	1 cut(s)	1343
NdeII	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
NlaIV	GGNNCC	4 cut(s)	253, 928, 1235, 1654
NmuCI	GTSAC	5 cut(s)	181, 223, 244, 505, 967
NspI	RCATGY	2 cut(s)	283, 1147
OliI	CACNNNNGTG	1 cut(s)	735
PasI	CCCWGGG	1 cut(s)	1190
PciI	ACATGT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	7 cut(s)	189, 210, 231, 817, 996, 1515, 1669
Ppu21I	YACGTR	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	1251
Psp6I	CCWGG	1 cut(s)	1189
PspEI	GGTNACC	2 cut(s)	181, 223
PspGI	CCWGG	1 cut(s)	1189
PspN4I	GGNNCC	4 cut(s)	253, 928, 1235, 1654
PspPI	GGNCC	1 cut(s)	476
PsrI	GAACNNNNNNTAC	2 cut(s)	566, 598
PsuI	RGATCY	2 cut(s)	748, 1605
RsaI	GTAC	5 cut(s)	647, 776, 1340, 1377, 1553
RsaNI	GTAC	5 cut(s)	646, 775, 1339, 1376, 1552
RseI	CAYNNNNRTG	2 cut(s)	584, 735
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	597, 1407, 1482
Sau3AI	GATC	8 cut(s)	122, 553, 716, 748, 1070, 1418, 1605, 1675
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	1191, 1343
SduI	GDGCHC	3 cut(s)	71, 254, 400
SfaNI	GCATC	4 cut(s)	88, 580, 698, 801
SfcI	CTRYAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	584, 735
Sse9I	AATT	8 cut(s)	417, 885, 903, 1053, 1065, 1113, 1351, 1530
SsiI	CCGC	8 cut(s)	217, 238, 258, 323, 741, 857, 860, 1278
SspMI	CTAG	5 cut(s)	608, 656, 893, 1238, 1711
StyD4I	CCNGG	2 cut(s)	1189, 1341
StyI	CCWWGG	2 cut(s)	438, 607
TaaI	ACNGT	3 cut(s)	79, 1135, 1349
TaiI	ACGT	2 cut(s)	1254, 1381
TaqI	TCGA	1 cut(s)	828
TasI	AATT	8 cut(s)	417, 885, 903, 1053, 1065, 1113, 1351, 1530
TatI	WGTACW	2 cut(s)	645, 1551
TauI	GCSGC	4 cut(s)	220, 241, 261, 860
TfiI	GAWTC	7 cut(s)	189, 210, 231, 817, 996, 1515, 1669
Tru1I	TTAA	3 cut(s)	597, 1407, 1482
Tru9I	TTAA	3 cut(s)	597, 1407, 1482
TscAI	CASTG	2 cut(s)	1210, 1428
TseFI	GTSAC	5 cut(s)	181, 223, 244, 505, 967
TseI	GCWGC	7 cut(s)	118, 686, 1155, 1169, 1325, 1328, 1646
Tsp45I	GTSAC	5 cut(s)	181, 223, 244, 505, 967
TspDTI	ATGAA	2 cut(s)	1112, 1345
TspRI	CASTG	2 cut(s)	1210, 1428
XapI	RAATTY	1 cut(s)	1053
XceI	RCATGY	2 cut(s)	283, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	607
XspI	CTAG	5 cut(s)	608, 656, 893, 1238, 1711
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.