Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004318.1

Orthogroup ID

OG0004566

Physical Location & Seq

Genomic Coordinates Reverse (-)

20229 .. 23092

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004318.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgacgatgggtgataacaagaaccagatgcttcaacacaaccaagtatttgatgtctcagtcaatatgccgccacagggaggctccaagtgctttgatgatgatggccgtctcaaaagaactggaactgtttggactgccagtgctcacataattactgctgtaattgggtctggagttctatccttggcttgggccatagctcagcttggatgggtggctggccctgctgtcatgttcttgttctctttggtgacttactacacttcaactctgctctctgcttgctaccgctccaatgatcctgacactggaaaaaggaactacacttacatggatgctgttcaatctaacctaggtggagctaaggtcaagatttgtggatatgttcagtacttgaacctttttggagttgccattggatacactatagcatcatctattagcatgatggcaatcaagaggtctaactgcttccacaaaagtggtggaaaagatccatgccatgtcaacagcaacccctacatgattgcatttggcatagcagaaattatattctctcagattccagactttgatcagttgtggtggctttccattgttgctgcagtcatgtccttcacttactccacaattggacttgcccttggaattgctaaagttgcagaaactggaacaatcatgggaagtatgaccggaataagcattggcactgtgactgaaacccaaaagatgtggaggagcttccaagctcttggtgacatagcttttgcctactcttactctcttattttgattgaaattcaggacacagttagatctccaccatctgaagccaagacaatgaagaaggccactataattagtgttgcagtgacaacccttttctacatgctatgtggctgcatgggctatgctgcttttggagacttatcccctggaaacttgctcactggttttggcttctataacccatattggctcttagacattgccaacgttgctatagtagtccaccttgttggtgcataccaagtttactgccaacccttatttgcctttgttgagaaagcagcagcgaaaaagtatccggagagcgaatttatctcaagagaaatcaaaatcccaattcccggtcttggccattgcaatcttaacctcttcagattggtgtggaggactgcctttgtgattgtgaccactgtaatctctatgctcctcccattctttaatgatgtggttggacttcttggagctttgggattctggccattgactgtttacttcccagttgagatgtacattgtgcagaagaggataccaaagtggagcacaagatggctttgcctccaaatcctaagtgttgcttgccttataataaccatagctgctgctgctggctcaattgctggggtgatttctgacctgaagatctacaagccattcaagaccagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

486

Amino Acids

53.27

Weight (kDa)

8.8

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44100 AT1G77380
fragaria_vesca	FvH4_2g27662 FvH4_2g27662 FvH4_2g27662 FvH4_2g27662
rosa_chinensis	RchiOBHm_Chr5g0038211 RchiOBHm_Chr5g0038231 RchiOBHm_Chr6g0296521
rosa_laevigata	RLG00000011685 RLG00000033839
rosa_multiflora	Rmu_co8258539.1_g000001 Rmu_sc0004318.1_g000008 Rmu_sc0006174.1_g000010 Rmu_sc0012148.1_g000005 Rmu_sc0015248.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171470 Rroxscaffold_7G00178660
rosa_rugosa	Rorug05G0171300 Rorug06G0262900 Rorug06G0262900 Rorug06G0262900
rosa_samantha	Rh2CG368900 Rh5BG262300 Rh5DG271400 Rh6AG374500 Rh6BG382900 Rh6CG387900 Rh6DG375600
rosa_wichuraiana	Rw5G024220 Rw6G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1376
AccBSI	CCGCTC	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	1090
AciI	CCGC	2 cut(s)	71, 292
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	2 cut(s)	296, 491
AcoI	YGGCCR	3 cut(s)	106, 1141, 1268
AcsI	RAATTY	2 cut(s)	801, 1100
AcuI	CTGAAG	3 cut(s)	852, 1147, 1448
AfaI	GTAC	2 cut(s)	395, 1301
AfiI	CCNNNNNNNGG	6 cut(s)	77, 80, 192, 311, 1133, 1139
AgsI	TTSAA	6 cut(s)	35, 270, 347, 400, 800, 1447
AjnI	CCWGG	1 cut(s)	937
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	9 cut(s)	203, 208, 365, 744, 752, 767, 1256, 1388, 1455
AluI	AGCT	9 cut(s)	203, 208, 365, 744, 752, 767, 1256, 1388, 1455
Alw21I	GWGCWC	2 cut(s)	148, 1334
Alw26I	GTCTC	3 cut(s)	61, 116, 921
AlwI	GGATC	2 cut(s)	296, 491
AlwNI	CAGNNNCTG	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	1090
AoxI	GGCC	6 cut(s)	106, 195, 223, 852, 1141, 1268
ApeKI	GCWGC	8 cut(s)	605, 903, 917, 1073, 1076, 1388, 1391, 1394
ApoI	RAATTY	2 cut(s)	801, 1100
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AspA2I	CCTAGG	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	195, 224
AsuC2I	CCSGG	1 cut(s)	1134
AsuHPI	GGTGA	4 cut(s)	23, 265, 770, 1426
AvrII	CCTAGG	1 cut(s)	355
BaeI	ACNNNNGTAYC	2 cut(s)	1310, 1343
BalI	TGGCCA	2 cut(s)	1143, 1270
Bbv12I	GWGCWC	2 cut(s)	148, 1334
BbvI	GCAGC	8 cut(s)	592, 890, 904, 1085, 1088, 1375, 1378, 1381
BccI	CCATC	5 cut(s)	98, 207, 445, 835, 1332
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	3 cut(s)	416, 1098, 1311
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	1134
BcoDI	GTCTC	3 cut(s)	61, 116, 921
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	3 cut(s)	429, 606, 1005
BfuI	GTATCC	3 cut(s)	416, 1098, 1311
BglII	AGATCT	2 cut(s)	818, 1431
BisI	GCNGC	9 cut(s)	71, 606, 904, 918, 1074, 1077, 1389, 1392, 1395
BlnI	CCTAGG	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	9 cut(s)	72, 607, 905, 919, 1075, 1078, 1390, 1393, 1396
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	939, 1134
BmgT120I	GGNCC	2 cut(s)	195, 224
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	939, 1134
BmrI	ACTGGG	1 cut(s)	1283
BmsI	GCATC	3 cut(s)	18, 328, 443
BmuI	ACTGGG	1 cut(s)	1283
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	1093
BpuMI	CCSGG	1 cut(s)	1134
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	186, 355, 646, 937
BsaWI	WCCGGW	2 cut(s)	695, 1090
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 80, 192, 311, 1133, 1139
Bse1I	ACTGG	6 cut(s)	127, 141, 316, 676, 958, 1289
Bse3DI	GCAATG	2 cut(s)	990, 1144
Bse8I	GATNNNNATC	1 cut(s)	455
BseAI	TCCGGA	1 cut(s)	1090
BseBI	CCWGG	1 cut(s)	939
BseDI	CCNNGG	4 cut(s)	186, 355, 646, 937
BseGI	GGATG	2 cut(s)	218, 343
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	6 cut(s)	77, 80, 192, 311, 1133, 1139
BseMI	GCAATG	2 cut(s)	990, 1144
BseMII	CTCAG	3 cut(s)	72, 218, 575
BseNI	ACTGG	6 cut(s)	127, 141, 316, 676, 958, 1289
BseRI	GAGGAG	2 cut(s)	754, 1208
BseXI	GCAGC	8 cut(s)	592, 890, 904, 1085, 1088, 1375, 1378, 1381
BseYI	CCCAGC	1 cut(s)	1409
BsgI	GTGCAG	1 cut(s)	1328
BshFI	GGCC	6 cut(s)	108, 197, 225, 854, 1143, 1270
BsiHKAI	GWGCWC	2 cut(s)	148, 1334
BsiSI	CCGG	3 cut(s)	696, 1091, 1134
BslI	CCNNNNNNNGG	6 cut(s)	77, 80, 192, 311, 1133, 1139
BsmAI	GTCTC	3 cut(s)	61, 116, 921
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	108, 197, 225, 854, 1143, 1270
Bsp1286I	GDGCHC	2 cut(s)	148, 1334
Bsp13I	TCCGGA	1 cut(s)	1090
Bsp1407I	TGTACA	1 cut(s)	1299
Bsp143I	GATC	5 cut(s)	301, 496, 577, 818, 1431
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	71, 292
BspANI	GGCC	6 cut(s)	108, 197, 225, 854, 1143, 1270
BspCNI	CTCAG	3 cut(s)	71, 217, 574
BspEI	TCCGGA	1 cut(s)	1090
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	2 cut(s)	296, 491
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	990, 1144
BsrGI	TGTACA	1 cut(s)	1299
BsrI	ACTGG	6 cut(s)	127, 141, 316, 676, 958, 1289
BssECI	CCNNGG	4 cut(s)	186, 355, 646, 937
BssMI	GATC	5 cut(s)	301, 496, 577, 818, 1431
BssT1I	CCWWGG	3 cut(s)	186, 355, 646
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	5 cut(s)	130, 715, 814, 1204, 1279
Bst6I	CTCTTC	2 cut(s)	1166, 1307
BstAUI	TGTACA	1 cut(s)	1299
BstC8I	GCNNGC	4 cut(s)	223, 286, 1369, 1399
BstDEI	CTNAG	6 cut(s)	58, 204, 366, 561, 985, 1358
BstF5I	GGATG	2 cut(s)	218, 343
BstKTI	GATC	5 cut(s)	304, 499, 580, 821, 1434
BstMAI	GTCTC	3 cut(s)	61, 116, 921
BstMBI	GATC	5 cut(s)	301, 496, 577, 818, 1431
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 227, 662, 909, 1001, 1394
BstNI	CCWGG	1 cut(s)	939
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	2 cut(s)	937, 1132
BstSFI	CTRYAG	3 cut(s)	429, 606, 1005
BstV1I	GCAGC	8 cut(s)	592, 890, 904, 1085, 1088, 1375, 1378, 1381
BstX2I	RGATCY	3 cut(s)	496, 818, 1431
BstXI	CCANNNNNNTGG	3 cut(s)	485, 755, 1022
BstYI	RGATCY	3 cut(s)	496, 818, 1431
BsuI	GTATCC	3 cut(s)	416, 1098, 1311
BsuRI	GGCC	6 cut(s)	108, 197, 225, 854, 1143, 1270
BtsCI	GGATG	2 cut(s)	218, 343
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	6 cut(s)	148, 309, 711, 879, 951, 1200
Cac8I	GCNNGC	4 cut(s)	223, 286, 1369, 1399
CaiI	CAGNNNCTG	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	195, 224
Csp6I	GTAC	2 cut(s)	394, 1300
CspCI	CAANNNNNGTGG	6 cut(s)	361, 396, 469, 504, 716, 751
CviQI	GTAC	2 cut(s)	394, 1300
DdeI	CTNAG	6 cut(s)	58, 204, 366, 561, 985, 1358
DpnI	GATC	5 cut(s)	303, 498, 579, 820, 1433
DpnII	GATC	5 cut(s)	301, 496, 577, 818, 1431
EaeI	YGGCCR	3 cut(s)	106, 1141, 1268
Eam1104I	CTCTTC	2 cut(s)	1166, 1307
EarI	CTCTTC	2 cut(s)	1166, 1307
Eco130I	CCWWGG	3 cut(s)	186, 355, 646
Eco57I	CTGAAG	3 cut(s)	852, 1147, 1448
EcoRII	CCWGG	1 cut(s)	937
EcoT14I	CCWWGG	3 cut(s)	186, 355, 646
ErhI	CCWWGG	3 cut(s)	186, 355, 646
Esp3I	CGTCTC	1 cut(s)	116
FalI	AAGNNNNNCTT	2 cut(s)	1351, 1383
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	9 cut(s)	71, 606, 904, 918, 1074, 1077, 1389, 1392, 1395
FokI	GGATG	2 cut(s)	225, 350
Fsp4HI	GCNGC	9 cut(s)	71, 606, 904, 918, 1074, 1077, 1389, 1392, 1395
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	9 cut(s)	71, 606, 904, 918, 1074, 1077, 1389, 1392, 1395
GsaI	CCCAGC	1 cut(s)	1413
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	6 cut(s)	108, 197, 225, 854, 1143, 1270
HapII	CCGG	3 cut(s)	696, 1091, 1134
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	565, 1263
HpaII	CCGG	3 cut(s)	696, 1091, 1134
HphI	GGTGA	4 cut(s)	23, 265, 770, 1426
Hpy166II	GTNNAC	4 cut(s)	511, 1015, 1039, 1282
Hpy188I	TCNGA	4 cut(s)	564, 832, 1166, 1423
Hpy188III	TCNNGA	9 cut(s)	174, 305, 373, 460, 569, 806, 1091, 1110, 1447
Hpy8I	GTNNAC	4 cut(s)	511, 1015, 1039, 1282
HpyAV	CCTTC	2 cut(s)	628, 844
HpyCH4III	ACNGT	5 cut(s)	130, 715, 814, 1204, 1279
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	8 cut(s)	533, 608, 665, 872, 906, 1028, 1149, 1309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 227, 662, 909, 1001, 1394
HpyF3I	CTNAG	6 cut(s)	58, 204, 366, 561, 985, 1358
HpySE526I	ACGT	1 cut(s)	999
Kpn2I	TCCGGA	1 cut(s)	1090
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	5 cut(s)	301, 496, 577, 818, 1431
LmnI	GCTCC	7 cut(s)	89, 299, 362, 741, 1221, 1253, 1329
Lsp1109I	GCAGC	8 cut(s)	592, 890, 904, 1085, 1088, 1375, 1378, 1381
LweI	GCATC	3 cut(s)	18, 328, 443
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	5 cut(s)	253, 715, 758, 874, 1195
MalI	GATC	5 cut(s)	303, 498, 579, 820, 1433
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	5 cut(s)	301, 496, 577, 818, 1431
MboII	GAAGA	4 cut(s)	859, 1153, 1324, 1441
MfeI	CAATTG	2 cut(s)	633, 1404
MflI	RGATCY	3 cut(s)	496, 818, 1431
MhlI	GDGCHC	2 cut(s)	148, 1334
MlsI	TGGCCA	2 cut(s)	1143, 1270
MluNI	TGGCCA	2 cut(s)	1143, 1270
MmeI	TCCRAC	1 cut(s)	1222
MnlI	CCTC	8 cut(s)	74, 456, 732, 1169, 1170, 1229, 1308, 1358
Mox20I	TGGCCA	2 cut(s)	1143, 1270
MroI	TCCGGA	1 cut(s)	1090
MscI	TGGCCA	2 cut(s)	1143, 1270
MseI	TTAA	2 cut(s)	1155, 1230
MslI	CAYNNNNRTG	2 cut(s)	332, 483
Msp20I	TGGCCA	2 cut(s)	1143, 1270
MspI	CCGG	3 cut(s)	696, 1091, 1134
MspR9I	CCNGG	2 cut(s)	939, 1134
MunI	CAATTG	2 cut(s)	633, 1404
MvaI	CCWGG	1 cut(s)	939
MwoI	GCNNNNNNNGC	6 cut(s)	90, 227, 662, 909, 1001, 1394
NciI	CCSGG	1 cut(s)	1134
NdeII	GATC	5 cut(s)	301, 496, 577, 818, 1431
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	5 cut(s)	253, 715, 758, 874, 1195
NspI	RCATGY	1 cut(s)	895
OliI	CACNNNNGTG	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	565, 1263
PkrI	GCNGC	9 cut(s)	72, 607, 905, 919, 1075, 1078, 1390, 1393, 1396
PsiI	TTATAA	1 cut(s)	1376
Psp1406I	AACGTT	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	937
PspFI	CCCAGC	1 cut(s)	1409
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	195, 224
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	3 cut(s)	496, 818, 1431
RsaI	GTAC	2 cut(s)	395, 1301
RsaNI	GTAC	2 cut(s)	394, 1300
RseI	CAYNNNNRTG	2 cut(s)	332, 483
SaqAI	TTAA	2 cut(s)	1155, 1230
SatI	GCNGC	9 cut(s)	71, 606, 904, 918, 1074, 1077, 1389, 1392, 1395
Sau3AI	GATC	5 cut(s)	301, 496, 577, 818, 1431
Sau96I	GGNCC	2 cut(s)	195, 224
ScaI	AGTACT	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	939, 1134
SduI	GDGCHC	2 cut(s)	148, 1334
SfaNI	GCATC	3 cut(s)	18, 328, 443
SfcI	CTRYAG	3 cut(s)	429, 606, 1005
SmiMI	CAYNNNNRTG	2 cut(s)	332, 483
SmlI	CTYRAG	1 cut(s)	1108
SmoI	CTYRAG	1 cut(s)	1108
SsiI	CCGC	2 cut(s)	71, 292
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	937, 1132
StyI	CCWWGG	3 cut(s)	186, 355, 646
TaaI	ACNGT	5 cut(s)	130, 715, 814, 1204, 1279
TaiI	ACGT	1 cut(s)	1002
TatI	WGTACW	2 cut(s)	393, 1299
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	565, 1263
Tru1I	TTAA	2 cut(s)	1155, 1230
Tru9I	TTAA	2 cut(s)	1155, 1230
TscAI	CASTG	6 cut(s)	148, 316, 718, 879, 958, 1207
TseFI	GTSAC	5 cut(s)	253, 715, 758, 874, 1195
TseI	GCWGC	8 cut(s)	605, 903, 917, 1073, 1076, 1388, 1391, 1394
Tsp45I	GTSAC	5 cut(s)	253, 715, 758, 874, 1195
TspDTI	ATGAA	1 cut(s)	860
TspRI	CASTG	6 cut(s)	148, 316, 718, 879, 958, 1207
XapI	RAATTY	2 cut(s)	801, 1100
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmaJI	CCTAGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.