Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

61273848 .. 61274653

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCTGGTGGTGGGCTGGAGCTATTGGCGCTGCTAAGTTGAAGTGCCACAAACACCAAAAGAGTGTTGGGTTAGTGATCGGTGTGATTGGCCAAGTGGGCAACAGGCTCGCCGAAATCCTATCAATCTCAGACATACATGGCGGTCCATGGAAGGTCTACGACGTGGCGCGCAGTCACCGTCCAAACTGGGACGTCGACCACCCAGTCGAGTGTGTCCTCCGGTCCACTAAGGCCGAGAGTTGCTCGGTCAACCGCGCCGAGGGGTTGCAGTTGAGATTTTCAGGGAGGAGAGAGGATTGGGAATCGTATTCGGAGGCTTCGGATGTGGATCTGATAGCGGAGCAGCAAATCTGGGCTGTGGTTGACCCGTATGCGCGGAACGAAAGGTTTAACATCAACAACAGGGTCGTGTTCAAGTGGAAGCATATATGGAAGGTGTTGGTAGAGCAGTATGAGATTGAGGAGTATGGTTTTGATCAGGATTTCAGCTTGGTGGAGATGATAAAGGATAAAGGTAGTGTGTGGGATGAGATAAAGGAGAATCAGCTGTGGCTGACGAAGTTGGAGGAGGTGGGAATGTGGCCCGAAAAGGTGGAAGAAGAAGAGATTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

206

Amino Acids

24.03

Weight (kDa)

5.35

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	198
AccI	GTMKAC	2 cut(s)	159, 198
AccII	CGCG	3 cut(s)	172, 258, 379
AciI	CCGC	4 cut(s)	144, 256, 341, 379
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	43, 418
AjiI	CACGTC	1 cut(s)	166
AluBI	AGCT	4 cut(s)	6, 23, 492, 550
AluI	AGCT	4 cut(s)	6, 23, 492, 550
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	3 cut(s)	91, 234, 584
ApeKI	GCWGC	2 cut(s)	32, 346
AspLEI	GCGC	5 cut(s)	32, 172, 174, 260, 379
AspS9I	GGNCC	3 cut(s)	146, 225, 585
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	146, 225
BalI	TGGCCA	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	19, 358
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BclI	TGATCA	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	33, 347
BlsI	GCNGC	2 cut(s)	34, 348
Bme18I	GGWCC	2 cut(s)	146, 225
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	146, 225, 585
BmrI	ACTGGG	2 cut(s)	199, 200
BmuI	ACTGGG	2 cut(s)	199, 200
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	149, 261
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	194, 206
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	149, 261
BseGI	GGATG	2 cut(s)	331, 535
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	194, 206
BsePI	GCGCGC	1 cut(s)	170
BseRI	GAGGAG	3 cut(s)	304, 479, 584
BseXI	GCAGC	2 cut(s)	19, 358
Bsh1236I	CGCG	3 cut(s)	172, 258, 379
BshFI	GGCC	3 cut(s)	93, 236, 586
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	93, 236, 586
Bsp143I	GATC	3 cut(s)	78, 331, 478
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	4 cut(s)	144, 256, 341, 379
BspANI	GGCC	3 cut(s)	93, 236, 586
BspCNI	CTCAG	1 cut(s)	143
BspFNI	CGCG	3 cut(s)	172, 258, 379
BspPI	GGATC	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	194, 206
BssECI	CCNNGG	2 cut(s)	149, 261
BssHII	GCGCGC	1 cut(s)	170
BssMI	GATC	3 cut(s)	78, 331, 478
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	111, 172
BstDEI	CTNAG	3 cut(s)	36, 130, 231
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	331, 535
BstFNI	CGCG	3 cut(s)	172, 258, 379
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	5 cut(s)	32, 172, 174, 260, 379
BstKTI	GATC	3 cut(s)	81, 334, 481
BstMBI	GATC	3 cut(s)	78, 331, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 99
BstUI	CGCG	3 cut(s)	172, 258, 379
BstV1I	GCAGC	2 cut(s)	19, 358
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	93, 236, 586
BtgI	CCRYGG	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	331, 535
Cac8I	GCNNGC	2 cut(s)	111, 172
CfoI	GCGC	5 cut(s)	32, 172, 174, 260, 379
Cfr13I	GGNCC	3 cut(s)	146, 225, 585
CviAII	CATG	2 cut(s)	140, 150
DdeI	CTNAG	3 cut(s)	36, 130, 231
DpnI	GATC	3 cut(s)	80, 333, 480
DpnII	GATC	3 cut(s)	78, 331, 478
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	146, 225
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	143, 153
FaiI	YATR	9 cut(s)	137, 141, 151, 375, 429, 431, 433, 456, 471
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	139, 149
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	159, 198
Fnu4HI	GCNGC	2 cut(s)	33, 347
FokI	GGATG	2 cut(s)	338, 542
Fsp4HI	GCNGC	2 cut(s)	33, 347
GlaI	GCGC	5 cut(s)	31, 171, 173, 259, 378
GluI	GCNGC	2 cut(s)	33, 347
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	93, 236, 586
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	5 cut(s)	32, 172, 174, 260, 379
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	143, 153
Hin6I	GCGC	5 cut(s)	30, 170, 172, 258, 377
HinP1I	GCGC	5 cut(s)	30, 170, 172, 258, 377
HincII	GTYRAC	3 cut(s)	199, 253, 367
HindII	GTYRAC	3 cut(s)	199, 253, 367
HinfI	GANTC	2 cut(s)	305, 544
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	5 cut(s)	160, 199, 228, 253, 367
Hpy188I	TCNGA	4 cut(s)	133, 316, 325, 336
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	5 cut(s)	160, 199, 228, 253, 367
Hpy99I	CGWCG	2 cut(s)	167, 200
HpyAV	CCTTC	2 cut(s)	148, 430
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	165, 195
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 99
HpyF3I	CTNAG	3 cut(s)	36, 130, 231
HpySE526I	ACGT	2 cut(s)	165, 195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	143, 153
HspAI	GCGC	5 cut(s)	30, 170, 172, 258, 377
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	78, 331, 478
LmnI	GCTCC	2 cut(s)	20, 343
LpnPI	CCDG	9 cut(s)	3, 91, 175, 219, 236, 270, 340, 391, 467
Lsp1109I	GCAGC	2 cut(s)	19, 358
MaeII	ACGT	2 cut(s)	165, 195
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	80, 333, 480
MboI	GATC	3 cut(s)	78, 331, 478
MboII	GAAGA	3 cut(s)	611, 614, 617
MflI	RGATCY	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	230, 256, 282, 289, 310, 457, 562, 565
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	2 cut(s)	393, 612
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	1 cut(s)	223
MvnI	CGCG	3 cut(s)	172, 258, 379
MwoI	GCNNNNNNNGC	2 cut(s)	29, 99
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	78, 331, 478
NlaIII	CATG	2 cut(s)	143, 153
NmeAIII	GCCGAG	2 cut(s)	262, 286
NmuCI	GTSAC	1 cut(s)	176
PauI	GCGCGC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	305, 544
PkrI	GCNGC	2 cut(s)	34, 348
PspPI	GGNCC	3 cut(s)	146, 225, 585
PsuI	RGATCY	1 cut(s)	331
PteI	GCGCGC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	550
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	393, 612
SatI	GCNGC	2 cut(s)	33, 347
Sau3AI	GATC	3 cut(s)	78, 331, 478
Sau96I	GGNCC	3 cut(s)	146, 225, 585
SinI	GGWCC	2 cut(s)	146, 225
SsiI	CCGC	4 cut(s)	144, 256, 341, 379
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	168, 198
TaqI	TCGA	2 cut(s)	198, 210
TaqII	GACCGA	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	305, 544
Tru1I	TTAA	2 cut(s)	393, 612
Tru9I	TTAA	2 cut(s)	393, 612
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	32, 346
Tsp45I	GTSAC	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	146, 225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	159, 198
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.