Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

25487092 .. 25487494

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG263200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGCTGGTGGTGGGCTGGAGCTATTGGAGCTGCTAAGAAAAAGTACGAAGAAGTTGAAGTGCCACAAACACCAAAGAGCGTTGGGTTAGTGATCGGTGTGATAGGCCAAGTGGGCAACAGCCTCGCCGAAATCCTATCAATCTCAGACATACCTGGCGGTCCATGGAAGGTCTACGGTGTCGCGCGCCGTCGCCGTCCAAACTGGGACGTCGACCACCCAGTCGAGTGCGTCCTGTGCAACATCTCCGATGCCGAAGACCTCAAGACCAAGATTTCTTCTTTGACTGACGTCACCCACATCTTCTACGTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

105

Amino Acids

11.57

Weight (kDa)

6.06

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	2 cut(s)	213, 294
AccI	GTMKAC	2 cut(s)	174, 213
AccII	CGCG	2 cut(s)	185, 187
AciI	CCGC	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	210, 291
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	6, 23, 32
AluI	AGCT	3 cut(s)	6, 23, 32
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	187, 189
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	286, 304
AvaII	GGWCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	174, 180
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	2 cut(s)	214, 215
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	2 cut(s)	214, 215
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	248
BsaHI	GRCGYC	2 cut(s)	210, 291
BsaJI	CCNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	209, 221
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	209, 221
BsePI	GCGCGC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	2 cut(s)	185, 187
BshFI	GGCC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	185, 187
BsrI	ACTGG	2 cut(s)	209, 221
BssECI	CCNNGG	1 cut(s)	164
BssHII	GCGCGC	1 cut(s)	185
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	2 cut(s)	210, 291
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	210, 291
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	36, 145
BstDSI	CCRYGG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	185, 187
BstHHI	GCGC	2 cut(s)	187, 189
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 114, 237
BstNI	CCWGG	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	2 cut(s)	185, 187
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	2 cut(s)	187, 189
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	6 cut(s)	6, 17, 23, 32, 108, 123
CviKI_1	RGCY	6 cut(s)	6, 17, 23, 32, 108, 123
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	36, 145
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	2 cut(s)	152, 166
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	164
FblI	GTMKAC	2 cut(s)	174, 213
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	2 cut(s)	186, 188
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	187, 189
Hin1I	GRCGYC	2 cut(s)	210, 291
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	185, 187
HinP1I	GCGC	2 cut(s)	185, 187
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HphI	GGTGA	2 cut(s)	286, 304
Hpy166II	GTNNAC	2 cut(s)	175, 214
Hpy188I	TCNGA	2 cut(s)	148, 250
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	175, 214
Hpy99I	CGWCG	2 cut(s)	195, 215
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	3 cut(s)	210, 291, 309
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 114, 237
HpyF3I	CTNAG	2 cut(s)	36, 145
HpySE526I	ACGT	3 cut(s)	210, 291, 309
Hsp92I	GRCGYC	2 cut(s)	210, 291
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	2 cut(s)	185, 187
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	20, 29
LpnPI	CCDG	6 cut(s)	3, 141, 168, 190, 234, 248
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	3 cut(s)	210, 291, 309
MaeIII	GTNAC	2 cut(s)	292, 310
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	4 cut(s)	62, 269, 270, 295
MnlI	CCTC	2 cut(s)	134, 272
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	185, 187
MwoI	GCNNNNNNNGC	3 cut(s)	29, 114, 237
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	292, 310
PauI	GCGCGC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	34
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	3 cut(s)	213, 294, 312
TaqI	TCGA	2 cut(s)	213, 225
TseFI	GTSAC	2 cut(s)	292, 310
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	2 cut(s)	292, 310
VpaK11BI	GGWCC	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	174, 213
ZraI	GACGTC	2 cut(s)	211, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.