Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

66244498 .. 66245051

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG497500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCTGGTGGTGGGCTGGAGCTATTGGCGCTGCCAAGAAAAAGTATGAAGAAGTTGAAGCGCCACGAACACCAAAGAGCGTGGGGTTAGTGATCGGTGTGACAGGCCAAGTGGGCAACAGCCTCGCCGAAATCCTACCAGTCTCAGACACACCCGGCGGTCCATGGAAGGTCTACGGCGTCGCGCGCCGTCCCCGGCCAAACTGGGACATCGACCACCCGGTAGAGTATGTCCGGTGCGACATCTCTGACGCCGAAGACGTCAAAACCAAGCTTTCTCCGTTGACTGACGTCACCCACATCTTCTACGTCACCTGGACGAGCCGGTCCTCCGAGGCCGAGAATTGCTCCGTCAACGGCGCCATGCTGCGCAACGTTTTGAGCTCCGTCATCCCGAACGAGCCGAATCTCCGCCACGTGTGCCTCCTCACCGGGACCAAGCACTACGACGGGCCGTTCGACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

6.06

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AatII	GACGTC	2 cut(s)	264, 294
Acc16I	TGCGCA	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	3 cut(s)	185, 187, 464
AciI	CCGC	2 cut(s)	159, 412
AclI	AACGTT	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	197
AcvI	CACGTG	1 cut(s)	418
AcyI	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
AflIII	ACRYGT	2 cut(s)	417, 462
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	4 cut(s)	6, 23, 274, 384
AluI	AGCT	4 cut(s)	6, 23, 274, 384
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	4 cut(s)	106, 197, 336, 452
ApeKI	GCWGC	2 cut(s)	32, 367
ArsI	GACNNNNNNTTYG	1 cut(s)	440
AspLEI	GCGC	6 cut(s)	32, 64, 187, 189, 362, 372
AspS9I	GGNCC	4 cut(s)	161, 327, 435, 452
AsuC2I	CCSGG	4 cut(s)	156, 196, 221, 433
AsuHPI	GGTGA	3 cut(s)	286, 304, 421
AvaII	GGWCC	3 cut(s)	161, 327, 435
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	19, 354
BceAI	ACGGC	4 cut(s)	174, 193, 373, 439
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	316
BcnI	CCSGG	4 cut(s)	156, 196, 221, 433
BcoDI	GTCTC	1 cut(s)	148
BfoI	RGCGCY	3 cut(s)	33, 65, 363
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	33, 368
BlsI	GCNGC	2 cut(s)	34, 369
Bme1390I	CCNGG	5 cut(s)	156, 196, 221, 316, 433
Bme18I	GGWCC	3 cut(s)	161, 327, 435
BmgT120I	GGNCC	4 cut(s)	161, 327, 435, 452
BmiI	GGNNCC	2 cut(s)	361, 436
BmrFI	CCNGG	5 cut(s)	156, 196, 221, 316, 433
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	4 cut(s)	156, 196, 221, 433
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
BsaJI	CCNNGG	3 cut(s)	164, 194, 333
BsaWI	WCCGGW	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	140, 209
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	3 cut(s)	164, 194, 333
BseGI	GGATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	140, 209
BsePI	GCGCGC	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	19, 354
Bsh1236I	CGCG	3 cut(s)	185, 187, 464
BshFI	GGCC	4 cut(s)	108, 199, 338, 454
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	6 cut(s)	156, 196, 221, 235, 325, 432
BslFI	GGGAC	3 cut(s)	177, 221, 448
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	3 cut(s)	177, 221, 448
BsnI	GGCC	4 cut(s)	108, 199, 338, 454
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	2 cut(s)	159, 412
BspANI	GGCC	4 cut(s)	108, 199, 338, 454
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	3 cut(s)	185, 187, 464
BspLI	GGNNCC	2 cut(s)	361, 436
BspT107I	GGYRCC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	140, 209
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	3 cut(s)	164, 194, 333
BssHII	GCGCGC	1 cut(s)	185
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	316
BstACI	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	3 cut(s)	185, 187, 464
BstH2I	RGCGCY	3 cut(s)	33, 65, 363
BstHHI	GCGC	6 cut(s)	32, 64, 187, 189, 362, 372
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 420
BstNI	CCWGG	1 cut(s)	316
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	5 cut(s)	154, 194, 219, 314, 431
BstUI	CGCG	3 cut(s)	185, 187, 464
BstV1I	GCAGC	2 cut(s)	19, 354
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	108, 199, 338, 454
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	6 cut(s)	32, 64, 187, 189, 362, 372
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	4 cut(s)	161, 327, 435, 452
CseI	GACGC	2 cut(s)	169, 260
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	2 cut(s)	165, 364
DdeI	CTNAG	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	3 cut(s)	161, 327, 435
Eco53kI	GAGCTC	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	386
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	168, 367
FaiI	YATR	4 cut(s)	48, 166, 231, 365
FaqI	GGGAC	3 cut(s)	177, 221, 448
FatI	CATG	2 cut(s)	164, 363
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	33, 368
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	33, 368
FspI	TGCGCA	1 cut(s)	371
GlaI	GCGC	6 cut(s)	31, 63, 186, 188, 361, 371
GluI	GCNGC	2 cut(s)	33, 368
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	3 cut(s)	33, 65, 363
HaeIII	GGCC	4 cut(s)	108, 199, 338, 454
HapII	CCGG	6 cut(s)	156, 196, 221, 235, 325, 432
HgaI	GACGC	2 cut(s)	169, 260
HhaI	GCGC	6 cut(s)	32, 64, 187, 189, 362, 372
Hin1I	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
Hin1II	CATG	2 cut(s)	168, 367
Hin6I	GCGC	6 cut(s)	30, 62, 185, 187, 360, 370
HinP1I	GCGC	6 cut(s)	30, 62, 185, 187, 360, 370
HincII	GTYRAC	2 cut(s)	285, 355
HindII	GTYRAC	2 cut(s)	285, 355
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	156, 196, 221, 235, 325, 432
HphI	GGTGA	3 cut(s)	286, 304, 421
Hpy166II	GTNNAC	3 cut(s)	175, 285, 355
Hpy188I	TCNGA	3 cut(s)	148, 250, 334
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	3 cut(s)	175, 285, 355
Hpy99I	CGWCG	3 cut(s)	185, 452, 464
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	5 cut(s)	261, 291, 309, 375, 417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 420
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	5 cut(s)	261, 291, 309, 375, 417
Hsp92I	GRCGYC	5 cut(s)	180, 252, 261, 291, 360
Hsp92II	CATG	2 cut(s)	168, 367
HspAI	GCGC	6 cut(s)	30, 62, 185, 187, 360, 370
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	3 cut(s)	20, 353, 389
Lsp1109I	GCAGC	2 cut(s)	19, 354
MaeII	ACGT	5 cut(s)	261, 291, 309, 375, 417
MaeIII	GTNAC	3 cut(s)	100, 292, 310
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	62, 269, 295
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	1 cut(s)	343
MluI	ACGCGT	1 cut(s)	462
Mly113I	GGCGCC	1 cut(s)	360
MnlI	CCTC	5 cut(s)	134, 328, 340, 434, 437
MspI	CCGG	6 cut(s)	156, 196, 221, 235, 325, 432
MspR9I	CCNGG	5 cut(s)	156, 196, 221, 316, 433
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	3 cut(s)	185, 187, 464
MwoI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 420
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	4 cut(s)	156, 196, 221, 433
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	168, 367
NlaIV	GGNNCC	2 cut(s)	361, 436
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	100, 292, 310
NsbI	TGCGCA	1 cut(s)	371
PauI	GCGCGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 456
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	34, 369
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	361, 436
PspPI	GGNCC	4 cut(s)	161, 327, 435, 452
PteI	GCGCGC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	386
SatI	GCNGC	2 cut(s)	33, 368
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	4 cut(s)	161, 327, 435, 452
ScrFI	CCNGG	5 cut(s)	156, 196, 221, 316, 433
SduI	GDGCHC	1 cut(s)	386
SfoI	GGCGCC	1 cut(s)	361
SinI	GGWCC	3 cut(s)	161, 327, 435
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	159, 412
SspDI	GGCGCC	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	386
StyD4I	CCNGG	5 cut(s)	154, 194, 219, 314, 431
StyI	CCWWGG	1 cut(s)	164
TaiI	ACGT	5 cut(s)	264, 294, 312, 378, 420
TaqI	TCGA	2 cut(s)	213, 459
TasI	AATT	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	406
TseFI	GTSAC	3 cut(s)	100, 292, 310
TseI	GCWGC	2 cut(s)	32, 367
Tsp45I	GTSAC	3 cut(s)	100, 292, 310
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	3 cut(s)	270, 340, 376
VpaK11BI	GGWCC	3 cut(s)	161, 327, 435
XmiI	GTMKAC	1 cut(s)	174
ZraI	GACGTC	2 cut(s)	262, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.