Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

9204099 .. 9204705

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTTGGTGGTGGGCAAGAGCTATAGGAGCTGCAAAGAAAAAGTTTGATCCCGCCGATGCACCGCCCAAATACCAGGACCAGGGCGTGGCCCTGGTACTTGGGGTTACCGGACTCGTCGGAAACAGTCTCGCCGAGATTCTTCCACTGCCCGACACTCCCGGCGGGCCGTGGAAGGTCTACGGCGTGGCCCGGCGGCCCCGGCCGCAGTGGAACGCTGACCACCCGATTCAGTACATCCAGTGTGACCTCTCTGACTCTACACAGACCGAGGCAGAGCTCTCCCAGCTCACTGATGTCACTCACATTTTTATGTCACGTGGGCGAGCAAGCCAACTGAAGCTGAGAACTGTGAGGCTAATGGCAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

124

Amino Acids

13.79

Weight (kDa)

9.34

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	5 cut(s)	54, 65, 165, 196, 206
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	359
AcvI	CACGTG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	99, 236
AfiI	CCNNNNNNNGG	2 cut(s)	82, 88
AjnI	CCWGG	3 cut(s)	75, 81, 93
AluBI	AGCT	5 cut(s)	23, 32, 280, 289, 343
AluI	AGCT	5 cut(s)	23, 32, 280, 289, 343
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	5 cut(s)	90, 167, 189, 197, 203
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	5 cut(s)	79, 91, 167, 190, 198
AsuC2I	CCSGG	3 cut(s)	162, 193, 202
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	154, 199
BciT130I	CCWGG	3 cut(s)	77, 83, 95
BcnI	CCSGG	3 cut(s)	162, 193, 202
BcoDI	GTCTC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	3 cut(s)	33, 197, 206
BlsI	GCNGC	3 cut(s)	34, 198, 207
Bme1390I	CCNGG	6 cut(s)	77, 83, 95, 162, 193, 202
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	5 cut(s)	79, 91, 167, 190, 198
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	6 cut(s)	77, 83, 95, 162, 193, 202
BmsI	GCATC	1 cut(s)	49
BpuMI	CCSGG	3 cut(s)	162, 193, 202
BsaAI	YACGTR	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	82, 93, 170, 200, 270
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 88
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	3 cut(s)	77, 83, 95
BseDI	CCNNGG	5 cut(s)	82, 93, 170, 200, 270
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	82, 88
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	241
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	92, 169, 191, 199, 205
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	4 cut(s)	111, 162, 193, 202
BslI	CCNNNNNNNGG	2 cut(s)	82, 88
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	5 cut(s)	92, 169, 191, 199, 205
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	5 cut(s)	54, 65, 165, 196, 206
BspANI	GGCC	5 cut(s)	92, 169, 191, 199, 205
BspCNI	CTCAG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	5 cut(s)	82, 93, 170, 200, 270
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	3 cut(s)	77, 83, 95
Bst4CI	ACNGT	2 cut(s)	128, 352
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	167, 327, 331
BstDEI	CTNAG	1 cut(s)	344
BstDSI	CCRYGG	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 202, 205, 286
BstNI	CCWGG	3 cut(s)	77, 83, 95
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	6 cut(s)	75, 81, 93, 160, 191, 200
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	203
BsuRI	GGCC	5 cut(s)	92, 169, 191, 199, 205
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	2 cut(s)	146, 215
BtsIMutI	CAGTG	4 cut(s)	146, 215, 248, 291
Cac8I	GCNNGC	3 cut(s)	167, 327, 331
Cfr13I	GGNCC	5 cut(s)	79, 91, 167, 190, 198
Csp6I	GTAC	2 cut(s)	98, 235
CviQI	GTAC	2 cut(s)	98, 235
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	203
EagI	CGGCCG	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	75, 81, 93
EcoT38I	GRGCYC	1 cut(s)	282
FaiI	YATR	2 cut(s)	26, 314
FauI	CCCGC	2 cut(s)	61, 158
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	33, 197, 206
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	33, 197, 206
GluI	GCNGC	3 cut(s)	33, 197, 206
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	5 cut(s)	92, 169, 191, 199, 205
HapII	CCGG	4 cut(s)	111, 162, 193, 202
HinfI	GANTC	4 cut(s)	114, 139, 229, 257
HpaII	CCGG	4 cut(s)	111, 162, 193, 202
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	122, 256
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	128, 352
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	35, 62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 202, 205, 286
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	4 cut(s)	106, 245, 298, 315
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	108, 251
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	260, 265, 348
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	4 cut(s)	111, 162, 193, 202
MspR9I	CCNGG	6 cut(s)	77, 83, 95, 162, 193, 202
MvaI	CCWGG	3 cut(s)	77, 83, 95
MwoI	GCNNNNNNNGC	4 cut(s)	29, 202, 205, 286
NciI	CCSGG	3 cut(s)	162, 193, 202
NdeII	GATC	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	3 cut(s)	245, 298, 315
PfeI	GAWTC	2 cut(s)	139, 229
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	34, 198, 207
PleI	GAGTC	2 cut(s)	108, 251
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
PpsI	GAGTC	2 cut(s)	108, 251
Ppu21I	YACGTR	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	3 cut(s)	75, 81, 93
PspCI	CACGTG	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	3 cut(s)	75, 81, 93
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	5 cut(s)	79, 91, 167, 190, 198
RsaI	GTAC	2 cut(s)	99, 236
RsaNI	GTAC	2 cut(s)	98, 235
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	282
SatI	GCNGC	3 cut(s)	33, 197, 206
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	5 cut(s)	79, 91, 167, 190, 198
SchI	GAGTC	2 cut(s)	108, 251
ScrFI	CCNGG	6 cut(s)	77, 83, 95, 162, 193, 202
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	8 cut(s)	25, 34, 180, 252, 282, 291, 322, 345
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	311
SsiI	CCGC	5 cut(s)	54, 65, 165, 196, 206
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	6 cut(s)	75, 81, 93, 160, 191, 200
TaaI	ACNGT	2 cut(s)	128, 352
TaiI	ACGT	1 cut(s)	322
TaqII	GACCGA	1 cut(s)	284
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	199, 208
TfiI	GAWTC	2 cut(s)	139, 229
TscAI	CASTG	4 cut(s)	153, 215, 248, 298
TseFI	GTSAC	3 cut(s)	245, 298, 315
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	3 cut(s)	245, 298, 315
TspRI	CASTG	4 cut(s)	153, 215, 248, 298
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.