Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

8529372 .. 8529683

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG057800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGCTGGTGGTGGGCTGGAGCTATTGGCGCTGCTAAGAAAAAGTACGAAGAAGTTGAAGTGCCACAAACACCAAAGAGCGTTGGGTTAGTGATCGGTGTGATAGGCCAAGTGGGCAATAGCCTCGCCGAAATCCTATCCATCTCAGACACACTAGGCGGTCCATGGAAGGTCTACGACGTCGCGTGCCGTCGCCATCCAAACTGGGACGTCGACCACCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

75

Amino Acids

8.21

Weight (kDa)

6.02

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	2 cut(s)	183, 213
AccI	GTMKAC	2 cut(s)	174, 213
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	180, 210
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	2 cut(s)	6, 23
AluI	AGCT	2 cut(s)	6, 23
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	149, 204
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BfaI	CTAG	2 cut(s)	155, 226
BfoI	RGCGCY	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrI	ACTGGG	2 cut(s)	214, 215
BmuI	ACTGGG	2 cut(s)	214, 215
BpmI	CTGGAG	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	180, 210
BsaJI	CCNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	209, 221
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	209, 221
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	209, 221
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	2 cut(s)	180, 210
BssT1I	CCWWGG	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	180, 210
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	36, 145
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 114
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	5 cut(s)	6, 17, 23, 108, 123
CviKI_1	RGCY	5 cut(s)	6, 17, 23, 108, 123
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	36, 145
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	164
FblI	GTMKAC	2 cut(s)	174, 213
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	155, 226
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	2 cut(s)	180, 210
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	175, 214
Hpy188I	TCNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	175, 214
Hpy99I	CGWCG	4 cut(s)	182, 185, 195, 215
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	180, 210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 114
HpyF3I	CTNAG	2 cut(s)	36, 145
HpySE526I	ACGT	2 cut(s)	180, 210
Hsp92I	GRCGYC	2 cut(s)	180, 210
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	2 cut(s)	3, 190
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	155, 226
MaeII	ACGT	2 cut(s)	180, 210
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	62
MnlI	CCTC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	29, 114
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	5 cut(s)	8, 25, 174, 183, 213
SgeI	CNNG	9 cut(s)	19, 30, 122, 137, 167, 177, 196, 198, 217
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	155, 226
StyI	CCWWGG	1 cut(s)	164
TaiI	ACGT	2 cut(s)	183, 213
TaqI	TCGA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	174, 213
XspI	CTAG	2 cut(s)	155, 226
ZraI	GACGTC	2 cut(s)	181, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.