Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010004.1

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Forward (+)

26445 .. 26920

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010004.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcatggctgacgcacaacggcgtaaacctgcaagttaaaaaggaagcagcagaacagcgaagatccaaaaatcatgagctgaaaaagtacgaagaagttgaagtgccacaaacaccaaagagtgttgggttagtgatcggtgtgataggccaagtggacaacaggctcgccgaaatcctatcaatctcagacatacctggcggtccatggaaggtctacgacgtggcgcatcgtcaccgtccaaactgggacgttgaccacccagtcgagtgtgtcctatgcgacatctctgacgccgaagacctcaagaccaagatttcttctttgactgacgtcacccacatcttctacgtcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

5.82

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	297, 336
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	104
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	230, 331, 349
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	2 cut(s)	259, 260
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	2 cut(s)	259, 260
BoxI	GACNNNNGTC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	297, 336
BsaJI	CCNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	254, 266
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	254, 266
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	65, 138
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	254, 266
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	65, 138
BssNI	GRCGYC	2 cut(s)	297, 336
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	2 cut(s)	297, 336
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	68, 141
BstMBI	GATC	2 cut(s)	65, 138
BstNI	CCWGG	1 cut(s)	201
BstPAI	GACNNNNGTC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	2 cut(s)	22, 305
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	6, 77, 210
CviJI	RGCY	4 cut(s)	10, 82, 153, 169
CviKI_1	RGCY	4 cut(s)	10, 82, 153, 169
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	2 cut(s)	67, 140
DpnII	GATC	2 cut(s)	65, 138
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	9, 80, 213
FaiI	YATR	5 cut(s)	7, 78, 197, 211, 283
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	5, 76, 209
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	2 cut(s)	22, 305
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	2 cut(s)	297, 336
Hin1II	CATG	3 cut(s)	9, 80, 213
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HphI	GGTGA	3 cut(s)	230, 331, 349
Hpy166II	GTNNAC	4 cut(s)	28, 160, 220, 259
Hpy188I	TCNGA	2 cut(s)	193, 295
Hpy188III	TCNNGA	2 cut(s)	77, 310
Hpy8I	GTNNAC	4 cut(s)	28, 160, 220, 259
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	4 cut(s)	225, 255, 336, 354
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	4 cut(s)	225, 255, 336, 354
Hsp92I	GRCGYC	2 cut(s)	297, 336
Hsp92II	CATG	3 cut(s)	9, 80, 213
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	65, 138
LpnPI	CCDG	6 cut(s)	44, 151, 186, 213, 235, 279
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	4 cut(s)	225, 255, 336, 354
MaeIII	GTNAC	3 cut(s)	236, 337, 355
MalI	GATC	2 cut(s)	67, 140
MboI	GATC	2 cut(s)	65, 138
MboII	GAAGA	5 cut(s)	75, 107, 314, 315, 340
MflI	RGATCY	1 cut(s)	65
MnlI	CCTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	65, 138
NlaIII	CATG	3 cut(s)	9, 80, 213
NmuCI	GTSAC	3 cut(s)	236, 337, 355
PagI	TCATGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	65, 138
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	4 cut(s)	228, 258, 339, 357
TaqI	TCGA	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	3 cut(s)	236, 337, 355
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	3 cut(s)	236, 337, 355
VpaK11BI	GGWCC	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	219
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.