Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201886.1

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 355

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 274 bp

atgagctggtggtgggctggagctattggcgctgccaagaaaaagtatgaagaagttgaagcgccacgaacaccaaagagcgtggggttagtgatcggtgtgacaggccaagtgggcaacagcctcgccgaaatcctaccagtctcagacacacccggcggtccatggaaggtctacggcgtcgcgcgccgtccccggccaaactgggacatcgaccacccggtagagtacgtccggtgcgacatctgcgacgccgaagacgtcaaaaccaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

91

Amino Acids

10.02

Weight (kDa)

6.56

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	185, 187
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	197
AcyI	GRCGYC	3 cut(s)	180, 252, 261
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	2 cut(s)	6, 23
AluI	AGCT	2 cut(s)	6, 23
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	2 cut(s)	106, 197
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	4 cut(s)	32, 64, 187, 189
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	3 cut(s)	156, 196, 221
AvaII	GGWCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	174, 193
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcnI	CCSGG	3 cut(s)	156, 196, 221
BcoDI	GTCTC	1 cut(s)	148
BfoI	RGCGCY	2 cut(s)	33, 65
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	3 cut(s)	156, 196, 221
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	3 cut(s)	156, 196, 221
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	3 cut(s)	156, 196, 221
BsaHI	GRCGYC	3 cut(s)	180, 252, 261
BsaJI	CCNNGG	2 cut(s)	164, 194
BsaWI	WCCGGW	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	140, 209
BseDI	CCNNGG	2 cut(s)	164, 194
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	140, 209
BsePI	GCGCGC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	2 cut(s)	185, 187
BshFI	GGCC	2 cut(s)	108, 199
BsiSI	CCGG	4 cut(s)	156, 196, 221, 235
BslFI	GGGAC	2 cut(s)	177, 221
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	177, 221
BsnI	GGCC	2 cut(s)	108, 199
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	108, 199
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	185, 187
BsrI	ACTGG	2 cut(s)	140, 209
BssECI	CCNNGG	2 cut(s)	164, 194
BssHII	GCGCGC	1 cut(s)	185
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	3 cut(s)	180, 252, 261
BssT1I	CCWWGG	1 cut(s)	164
BstACI	GRCGYC	3 cut(s)	180, 252, 261
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	185, 187
BstH2I	RGCGCY	2 cut(s)	33, 65
BstHHI	GCGC	4 cut(s)	32, 64, 187, 189
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 246
BstSCI	CCNGG	3 cut(s)	154, 194, 219
BstUI	CGCG	2 cut(s)	185, 187
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	108, 199
BtgI	CCRYGG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	4 cut(s)	32, 64, 187, 189
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	2 cut(s)	169, 260
Csp6I	GTAC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	6 cut(s)	6, 17, 23, 108, 123, 199
CviKI_1	RGCY	6 cut(s)	6, 17, 23, 108, 123, 199
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	2 cut(s)	48, 166
FaqI	GGGAC	2 cut(s)	177, 221
FatI	CATG	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	4 cut(s)	31, 63, 186, 188
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	2 cut(s)	33, 65
HaeIII	GGCC	2 cut(s)	108, 199
HapII	CCGG	4 cut(s)	156, 196, 221, 235
HgaI	GACGC	2 cut(s)	169, 260
HhaI	GCGC	4 cut(s)	32, 64, 187, 189
Hin1I	GRCGYC	3 cut(s)	180, 252, 261
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	4 cut(s)	30, 62, 185, 187
HinP1I	GCGC	4 cut(s)	30, 62, 185, 187
HpaII	CCGG	4 cut(s)	156, 196, 221, 235
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	185, 254
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	231, 261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 246
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	2 cut(s)	231, 261
Hsp92I	GRCGYC	3 cut(s)	180, 252, 261
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	4 cut(s)	30, 62, 185, 187
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	8 cut(s)	3, 90, 153, 169, 190, 209, 234, 248
Lsp1109I	GCAGC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	231, 261
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	62, 269
MnlI	CCTC	1 cut(s)	134
MspI	CCGG	4 cut(s)	156, 196, 221, 235
MspR9I	CCNGG	3 cut(s)	156, 196, 221
MvnI	CGCG	2 cut(s)	185, 187
MwoI	GCNNNNNNNGC	4 cut(s)	29, 114, 186, 246
NciI	CCSGG	3 cut(s)	156, 196, 221
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	100
PauI	GCGCGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 258
PkrI	GCNGC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	156, 196, 221
SetI	ASST	5 cut(s)	8, 25, 174, 234, 264
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	154, 194, 219
StyI	CCWWGG	1 cut(s)	164
TaiI	ACGT	2 cut(s)	234, 264
TaqI	TCGA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	174
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.