Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018197

Physical Location & Seq

Genomic Coordinates Forward (+)

61257597 .. 61258399

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGCTGGTGGTGGGCTGGAGCTATTGGCGCTGCTAAGAAAAAGTACGAAGAAGTTGAAGTGCCACAAACACCAAAGAGTGTTGGGTTAGTGATCGGTGTGATAGGCCAAGTGGACAACAGGCTCGCCGAAATCCTATCAATCTCAGACATACCTGGCGGTCCATGGAAGGTCTATGACGTGGCGCACCGTCACCATCCAAACTGGGACGTTGACCACCCAGTCGAGTGTGTCCTGTGCGACATCTCCGACGTCGAAGACCTCAAGACCAAGATTTCTTCTTTGACTGACGTCACCCACATCTTCTACAGTTGCTCGGTCAACGGCGCCGAGGGGTTGCAGTTGAGATTTTCAGGGAGGAGAGAGGATTGGGAATCGTATTCGGAGGCTTCGGATGTGGATCTGATAGCGGAGCAGCAAATCTGGGCGGTGGTTGACCCGGTCGTGTTCAAGTGGAAGCATATATGGAAGGTGTTGGCGGAGCAGTATGAGATTGAGGAGTATGGTTATGATCAAGATTTCAGCTTGATAGTAAAGGAGAATCAACTGCGGCTGATGAAGTTGGAGGAGGTGGGAATGTGGCCCGAAAAGGTGGAAGAAGAAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

203

Amino Acids

23.35

Weight (kDa)

4.58

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018197)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057341 RchiOBHm_Chr6g0254171
rosa_multiflora	Rmu_co8201886.1_g000001 Rmu_sc0010004.1_g000004
rosa_samantha	Rh1BG057800 Rh3BG263200 Rh6AG066800 Rh6BG059900 Rh6CG497500
rosa_wichuraiana	Rw5G035420 Rw5G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	2 cut(s)	255, 294
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	5 cut(s)	159, 410, 428, 479, 550
AclWI	GGATC	1 cut(s)	408
AcyI	GRCGYC	3 cut(s)	252, 291, 327
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	59, 451
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	6, 23, 525
AluI	AGCT	3 cut(s)	6, 23, 525
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	106, 581
ApeKI	GCWGC	2 cut(s)	32, 415
AspLEI	GCGC	3 cut(s)	32, 187, 329
AspS9I	GGNCC	2 cut(s)	161, 582
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	185, 286
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	19, 427
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	307
BfoI	RGCGCY	2 cut(s)	33, 330
BisI	GCNGC	3 cut(s)	33, 416, 551
BlsI	GCNGC	3 cut(s)	34, 417, 552
Bme1390I	CCNGG	2 cut(s)	156, 440
Bme18I	GGWCC	1 cut(s)	161
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	161, 582
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	156, 440
BmrI	ACTGGG	2 cut(s)	214, 215
BmuI	ACTGGG	2 cut(s)	214, 215
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	3 cut(s)	252, 291, 327
BsaJI	CCNNGG	2 cut(s)	164, 330
Bse1I	ACTGG	2 cut(s)	209, 221
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	164, 330
BseGI	GGATG	2 cut(s)	196, 400
BseJI	GATNNNNATC	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	209, 221
BseRI	GAGGAG	3 cut(s)	373, 512, 581
BseXI	GCAGC	2 cut(s)	19, 427
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	108, 583
BshNI	GGYRCC	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	108, 583
Bsp143I	GATC	3 cut(s)	93, 400, 511
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	5 cut(s)	159, 410, 428, 479, 550
BspANI	GGCC	2 cut(s)	108, 583
BspCNI	CTCAG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	209, 221
BssECI	CCNNGG	2 cut(s)	164, 330
BssMI	GATC	3 cut(s)	93, 400, 511
BssNI	GRCGYC	3 cut(s)	252, 291, 327
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	191, 311
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	3 cut(s)	252, 291, 327
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	36, 145
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	196, 400
BstH2I	RGCGCY	2 cut(s)	33, 330
BstHHI	GCGC	3 cut(s)	32, 187, 329
BstKTI	GATC	3 cut(s)	96, 403, 514
BstMBI	GATC	3 cut(s)	93, 400, 511
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	154, 438
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	19, 427
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	108, 583
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	196, 400
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	3 cut(s)	32, 187, 329
Cfr13I	GGNCC	2 cut(s)	161, 582
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	9 cut(s)	6, 17, 23, 108, 124, 389, 525, 553, 583
CviKI_1	RGCY	9 cut(s)	6, 17, 23, 108, 124, 389, 525, 553, 583
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	36, 145
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	3 cut(s)	95, 402, 513
DpnII	GATC	3 cut(s)	93, 400, 511
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	164
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	9 cut(s)	152, 166, 177, 462, 464, 466, 489, 504, 510
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	33, 416, 551
FokI	GGATG	2 cut(s)	183, 407
Fsp4HI	GCNGC	3 cut(s)	33, 416, 551
GlaI	GCGC	3 cut(s)	31, 186, 328
GluI	GCNGC	3 cut(s)	33, 416, 551
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	2 cut(s)	33, 330
HaeIII	GGCC	2 cut(s)	108, 583
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	3 cut(s)	32, 187, 329
Hin1I	GRCGYC	3 cut(s)	252, 291, 327
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	3 cut(s)	30, 185, 327
HinP1I	GCGC	3 cut(s)	30, 185, 327
HincII	GTYRAC	3 cut(s)	214, 322, 436
HindII	GTYRAC	3 cut(s)	214, 322, 436
HinfI	GANTC	2 cut(s)	374, 541
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	185, 286
Hpy166II	GTNNAC	4 cut(s)	115, 214, 322, 436
Hpy188I	TCNGA	5 cut(s)	148, 250, 385, 394, 405
Hpy188III	TCNNGA	2 cut(s)	265, 515
Hpy8I	GTNNAC	4 cut(s)	115, 214, 322, 436
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyAV	CCTTC	2 cut(s)	163, 463
HpyCH4III	ACNGT	2 cut(s)	191, 311
HpyCH4IV	ACGT	4 cut(s)	180, 210, 252, 291
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	36, 145
HpySE526I	ACGT	4 cut(s)	180, 210, 252, 291
Hsp92I	GRCGYC	3 cut(s)	252, 291, 327
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	3 cut(s)	30, 185, 327
KasI	GGCGCC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	93, 400, 511
LmnI	GCTCC	3 cut(s)	20, 412, 481
Lsp1109I	GCAGC	2 cut(s)	19, 427
MaeII	ACGT	4 cut(s)	180, 210, 252, 291
MaeIII	GTNAC	2 cut(s)	191, 292
MalI	GATC	3 cut(s)	95, 402, 513
MboI	GATC	3 cut(s)	93, 400, 511
MboII	GAAGA	6 cut(s)	62, 269, 270, 295, 608, 611
MflI	RGATCY	1 cut(s)	400
Mly113I	GGCGCC	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	273, 543
MnlI	CCTC	8 cut(s)	272, 325, 351, 358, 379, 490, 559, 562
MseI	TTAA	1 cut(s)	610
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	156, 440
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	93, 400, 511
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	191, 292
PfeI	GAWTC	2 cut(s)	374, 541
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	34, 417, 552
PluTI	GGCGCC	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	161, 582
PsuI	RGATCY	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	3 cut(s)	33, 416, 551
Sau3AI	GATC	3 cut(s)	93, 400, 511
Sau96I	GGNCC	2 cut(s)	161, 582
ScrFI	CCNGG	2 cut(s)	156, 440
SfcI	CTRYAG	1 cut(s)	307
SfoI	GGCGCC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	5 cut(s)	159, 410, 428, 479, 550
SspDI	GGCGCC	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	154, 438
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	191, 311
TaiI	ACGT	4 cut(s)	183, 213, 255, 294
TaqI	TCGA	2 cut(s)	225, 255
TaqII	GACCGA	1 cut(s)	307
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	374, 541
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	191, 292
TseI	GCWGC	2 cut(s)	32, 415
Tsp45I	GTSAC	2 cut(s)	191, 292
TspDTI	ATGAA	1 cut(s)	572
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	161
ZraI	GACGTC	2 cut(s)	253, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.