RchiOBHm_Chr5g0066361

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007711
Physical Location & Seq
Forward (+)
72452858 .. 72458775
5918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34213

Sequence Viewer

Length: 2574 bp
ATGTCGGGCGGGTTTTTTAGGGGTACTTCGGCTGATCAGGACACGAGGTTTTCTAATAAGCAAGCCAAGCTGCTGAAGTCGCAGAAATTTGCACCTGAATTGGAACATTTGGTGGACATGAGGAAGGTGAATATGGATGTGCTCCGTCCATGGATTGCTAATAGGGTAACTGAGCTTCTTGGGTTCGAAGATGAAGTTCTTATCAACTTCATTTATGGTCTTTTGGATGTGAAGGAAGTGAATGGAAAGGAGATTCAAATTTCACTGACTGGCTTTATGGAGAAAAATACGGTGAAGTTTATGAGAGAGCTTTGGACACTTCTTCTCAGTGCGCAAAACAATGCCAGTGGTGTCCCTCAACAGTTCTTGGATGCCAAACAAGAGGAAGCACGAAAAAAGAAGGAGGAGGCAGACGCAATTGAAACTCAGAGGAAGAAAGATAAGGAGACGCTTGAACTAGAGAGATCGAAGAAGATGGATGGAGGGGTTGATAAAAAATCAAGCAATGCTGCTTTGGAGCCAAACTCAAATCGTGTGTCACCAATGGCTTCAAGTGATCGTCCTGATGATGAAAGAGGGAATGGCAAGAGGAATGGTGTGAAGCCAAGTAACAAGGTTTCTAGATCTCCAGATTCAGCAGATTCAGATTCATCTTTGTCCCCTCGGTTTGGTGAACGAGACAGGTCAAGAAGTGTATCCATTTCACCAAAAGCACGAGGACGGTCCATTTCTTCTGAAAGGGGAAGGGGTTATCGCTCTCCACAAAGACGACCGATTACGCCTAGGAGGCGTTCACCTGAGGGATCACTCTCCCCAAAAGGAAGATCACTCTCCCCAAAAGGAAGATCACCTTATTCCAGGCGAGGATCAAGATCAAAATCACCACGCAGATCGCGCTCTCCTATAGTGCGTCGAGCTCGTTCTCCCTATCATCGTAGGTCACGATCTCCTGGACGTCGCAGGTCACCTCCTCCTTTCCGAAGCCGCAGATCACCCTCACCTTTTCGAGGCCGTAGATCACCCTATCGGCGCCGAAGATCACCCTCGCCTCCCCGCCGCCGCAGATTACCCTCACCTATTCGTAATCGCAGATCACCATCACCTATCCGACGTCGCAGATCACCCTCCCCTCTGCGGCGACGGACGTCACCTCTTGTACGGCGTCGCAGGTCCCCCTCACCCGCACGTCGCAGATCACCCTCTCCTGTTCGATCATCATATCGAAGATCTCCACGGAACAGGTATGCATCTCCATTGCAACGGAGGTCACCAGTTCGTGGTGGCAGAAGGTCCCCACCTCTTCGACGTAGGTCTCCTTCGCCTTCTGATCGAAGTTCTTCATCTCCTATTCGGCGTGATTCCCCTTCACCAATCAGGAGAACAACAAAGCAGCAGAGATCTCCCCTGCAATCCCACCAAGAAAGAACAAGGTCCATTGAGAACCTGTCTCCAGCGCCACAACAATCTTCTGGTTCTGAGGGGTCACTGCAGAGGGAATCGAAGAATGGAAATGATTACCGCAAAAGAGTTGCAGCTTTGTCACCATCACCAGAGAAGTCTCCTCCAATGTCAGAATCTCCACCAGGTGCAAGGAGTGTGAGGGAAAAGAGGAGATTGTCCAGTCCATATGAAAGTCCTGTGAAACGACCAAGGGAGCAAATTGCTCATTATGGTAGCTCAAGTCCTTCAAGGAAACCAAGAGAACAAAAACTTCGTTGTGACAGTCCCAAAGAAAGTGAAGAAGAGGAGGATGCGGGTCGCAGACCCCAGTCCTTAGAGAGAAGATCAAGAGACACATCACGGATCAGTAAGCAGATAATTTCTCCTGCTAAGATTCCTAATAAGGAAGAGTACTCTCCTGAAAGAGTAGCATCTGGTCAAAGGTTTACTGAATCTAAAAGCTATGTGGATAATACTGAAAGCAGAAACAAAGAGCAGGAAATGAAGAGTGGAAAATCCTCTGGGAGGGGGTCAAATGTACCAATTGTCCATAAAGACTCTCTGCCAGGTGAGACACAACGGGCATCAAATCCTGGTGAAGGTAAAAAAGCTGATGATAAGAACCGCTCTCATTTAAAGAATACCAAGGACAGCGAACATCGTAAACCTGGATCTTTACGCTCATCTGTTGAAATGATTGATCATAGTAATCAGAGTGGCGGTTTGGATTCTGGTTCTGAGGACAGTGACAAAGGCAGAAGCGAAGACAAGGAAAAGAGAAAGAATAAGAGATCAGAGAGGCAAGAAGTGACTTCAGATGATGATTACAGTTATGATTCTGCAATTGAGGACAGAAAGGAGGCTAAAAGGAGGAGGAAAGAGGAAAAGAGGTTGCGGAAGGAGAAGAAGCGCCGAAGACGTGAGGAGCGACGACGCAGAAGAGAAGAACGTCGTGCAGAGAAGCAGAAAGTGAAGAACTCCAGTGATGCTTCTGGTTCAGATGGTGAACATGTCACCGGAAGGGGGTTTCATTCAAGTGACAATGAAGAAGAGGCTGTTCAGAAGAAACTTGAGATTGAATTGCGCAAGAAGGCTATCGAATCACTCAAAGCAAAAAAGGGCATCAGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

857

Amino Acids

98.12

Weight (kDa)

11.24

Isoelectric Point (pI)

125.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWI PF01480 46 - 115 5.8e-27 PWI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 958, 1114, 1148
Acc16I TGCGCA 2 cut(s) 333, 2525
Acc36I ACCTGC 2 cut(s) 951, 1158
AccB1I GGYRCC 1 cut(s) 1029
AccB7I CCANNNNNTGG 1 cut(s) 1277
AccBSI CCGCTC 1 cut(s) 2067
AccII CGCG 1 cut(s) 895
AclWI GGATC 4 cut(s) 811, 874, 1811, 2119
AcsI RAATTY 2 cut(s) 86, 258
AcuI CTGAAG 2 cut(s) 95, 2238
AcyI GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
AdeI CACNNNGTG 1 cut(s) 1586
AfaI GTAC 4 cut(s) 25, 1158, 1853, 1980
AfiI CCNNNNNNNGG 7 cut(s) 668, 1007, 1134, 1277, 1965, 2039, 2463
AflIII ACRYGT 1 cut(s) 2449
AgsI TTSAA 8 cut(s) 257, 422, 455, 552, 1689, 2132, 2475, 2519
AjiI CACGTC 2 cut(s) 1187, 2360
AjnI CCWGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
AluBI AGCT 8 cut(s) 70, 175, 310, 917, 1535, 1677, 1902, 2051
AluI AGCT 8 cut(s) 70, 175, 310, 917, 1535, 1677, 1902, 2051
Alw21I GWGCWC 2 cut(s) 144, 919
Alw26I GTCTC 7 cut(s) 440, 672, 1317, 1452, 1563, 1785, 2006
AlwI GGATC 4 cut(s) 811, 874, 1811, 2119
AoxI GGCC 1 cut(s) 1009
ApeKI GCWGC 4 cut(s) 70, 509, 1390, 1532
ApoI RAATTY 2 cut(s) 86, 258
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
Asp700I GAANNNNTTC 1 cut(s) 1336
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 6 cut(s) 334, 897, 1032, 1456, 2352, 2526
AspS9I GGNCC 4 cut(s) 723, 1170, 1290, 1431
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 4 cut(s) 723, 1170, 1290, 1431
AvrII CCTAGG 1 cut(s) 782
AxyI CCTNAGG 1 cut(s) 798
BanI GGYRCC 1 cut(s) 1029
BanII GRGCYC 1 cut(s) 919
BarI GAAGNNNNNNTAC 4 cut(s) 159, 191, 1300, 1332
BauI CACGAG 2 cut(s) 43, 714
BbsI GAAGAC 2 cut(s) 2211, 2362
Bbv12I GWGCWC 2 cut(s) 144, 919
BbvI GCAGC 4 cut(s) 57, 496, 1402, 1544
BccI CCATC 5 cut(s) 469, 473, 1105, 1552, 2435
BceAI ACGGC 2 cut(s) 996, 1175
BciT130I CCWGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 2 cut(s) 34, 2140
BcoDI GTCTC 7 cut(s) 440, 672, 1317, 1452, 1563, 1785, 2006
BfaI CTAG 3 cut(s) 458, 621, 783
BfmI CTRYAG 2 cut(s) 903, 1487
BfoI RGCGCY 3 cut(s) 1033, 1457, 2353
BfuAI ACCTGC 2 cut(s) 951, 1158
BfuI GTATCC 1 cut(s) 706
BglI GCCNNNNNGGC 1 cut(s) 787
BglII AGATCT 3 cut(s) 623, 1226, 1397
BisI GCNGC 8 cut(s) 71, 510, 985, 1057, 1060, 1136, 1391, 1533
BlnI CCTAGG 1 cut(s) 782
BlsI GCNGC 8 cut(s) 72, 511, 986, 1058, 1061, 1137, 1392, 1534
BmcAI AGTACT 1 cut(s) 1853
Bme1390I CCNGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
Bme18I GGWCC 4 cut(s) 723, 1170, 1290, 1431
BmgBI CACGTC 2 cut(s) 1187, 2360
BmgT120I GGNCC 4 cut(s) 723, 1170, 1290, 1431
BmiI GGNNCC 4 cut(s) 519, 1031, 1172, 1292
BmrFI CCNGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
BmrI ACTGGG 1 cut(s) 1762
BmsI GCATC 6 cut(s) 361, 1256, 1741, 1880, 2033, 2416
BmuI ACTGGG 1 cut(s) 1762
BoxI GACNNNNGTC 3 cut(s) 1144, 1309, 1768
BpiI GAAGAC 2 cut(s) 2211, 2362
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 3 cut(s) 612, 1434, 2404
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 1663, 2531
BsaBI GATNNNNATC 3 cut(s) 871, 877, 1096
BsaHI GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
BsaI GGTCTC 1 cut(s) 1317
BsaJI CCNNGG 6 cut(s) 149, 662, 782, 1232, 1649, 2085
BsaWI WCCGGW 1 cut(s) 2456
Bsc4I CCNNNNNNNGG 7 cut(s) 668, 1007, 1134, 1277, 1965, 2039, 2463
Bse1I ACTGG 6 cut(s) 274, 345, 1271, 1620, 1768, 2421
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 2 cut(s) 511, 1253
Bse8I GATNNNNATC 3 cut(s) 871, 877, 1096
BseBI CCWGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
BseDI CCNNGG 6 cut(s) 149, 662, 782, 1232, 1649, 2085
BseGI GGATG 5 cut(s) 142, 232, 376, 484, 1756
BseJI GATNNNNATC 3 cut(s) 871, 877, 1096
BseLI CCNNNNNNNGG 7 cut(s) 668, 1007, 1134, 1277, 1965, 2039, 2463
BseMI GCAATG 2 cut(s) 511, 1253
BseMII CTCAG 6 cut(s) 162, 340, 440, 789, 1467, 2169
BseNI ACTGG 6 cut(s) 274, 345, 1271, 1620, 1768, 2421
BseRI GAGGAG 7 cut(s) 419, 960, 1551, 1624, 1760, 2326, 2378
BseXI GCAGC 4 cut(s) 57, 496, 1402, 1544
BsgI GTGCAG 1 cut(s) 2415
Bsh1236I CGCG 1 cut(s) 895
Bsh1285I CGRYCG 1 cut(s) 773
BshFI GGCC 1 cut(s) 1011
BshNI GGYRCC 1 cut(s) 1029
BsiEI CGRYCG 1 cut(s) 773
BsiHKAI GWGCWC 2 cut(s) 144, 919
BsiSI CCGG 1 cut(s) 2457
BslFI GGGAC 5 cut(s) 338, 643, 1156, 1276, 1710
BslI CCNNNNNNNGG 7 cut(s) 668, 1007, 1134, 1277, 1965, 2039, 2463
BsmAI GTCTC 7 cut(s) 440, 672, 1317, 1452, 1563, 1785, 2006
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 5 cut(s) 338, 643, 1156, 1276, 1710
BsnI GGCC 1 cut(s) 1011
Bso31I GGTCTC 1 cut(s) 1317
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 144, 919
Bsp19I CCATGG 1 cut(s) 149
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 6 cut(s) 163, 339, 439, 790, 1468, 2170
BspFNI CGCG 1 cut(s) 895
BspLI GGNNCC 4 cut(s) 519, 1031, 1172, 1292
BspMAI CTGCAG 1 cut(s) 1491
BspMI ACCTGC 2 cut(s) 951, 1158
BspPI GGATC 4 cut(s) 811, 874, 1811, 2119
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 1029
BspTNI GGTCTC 1 cut(s) 1317
BsrBI CCGCTC 1 cut(s) 2067
BsrDI GCAATG 2 cut(s) 511, 1253
BsrI ACTGG 6 cut(s) 274, 345, 1271, 1620, 1768, 2421
BssECI CCNNGG 6 cut(s) 149, 662, 782, 1232, 1649, 2085
BssNI GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
BssSI CACGAG 2 cut(s) 43, 714
BssT1I CCWWGG 4 cut(s) 149, 782, 1649, 2085
Bst2BI CACGAG 2 cut(s) 43, 714
Bst2UI CCWGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
Bst4CI ACNGT 6 cut(s) 292, 363, 723, 1724, 2186, 2270
Bst6I CTCTTC 6 cut(s) 1305, 1737, 1842, 1940, 2374, 2484
BstACI GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 8 cut(s) 171, 326, 426, 798, 1476, 1774, 1830, 2178
BstDSI CCRYGG 2 cut(s) 149, 1232
BstEII GGTNACC 2 cut(s) 963, 1266
BstENI CCTNNNNNAGG 3 cut(s) 1005, 1963, 2037
BstF5I GGATG 5 cut(s) 142, 232, 376, 484, 1756
BstFNI CGCG 1 cut(s) 895
BstH2I RGCGCY 3 cut(s) 1033, 1457, 2353
BstHHI GCGC 6 cut(s) 334, 897, 1032, 1456, 2352, 2526
BstMAI GTCTC 7 cut(s) 440, 672, 1317, 1452, 1563, 1785, 2006
BstMCI CGRYCG 1 cut(s) 773
BstMWI GCNNNNNNNGC 4 cut(s) 67, 79, 787, 894
BstNI CCWGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
BstNSI RCATGY 1 cut(s) 2453
BstPAI GACNNNNGTC 3 cut(s) 1144, 1309, 1768
BstPI GGTNACC 2 cut(s) 963, 1266
BstSCI CCNGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
BstSFI CTRYAG 2 cut(s) 903, 1487
BstUI CGCG 1 cut(s) 895
BstV1I GCAGC 4 cut(s) 57, 496, 1402, 1544
BstV2I GAAGAC 2 cut(s) 2211, 2362
BstX2I RGATCY 4 cut(s) 623, 1226, 1397, 2111
BstYI RGATCY 4 cut(s) 623, 1226, 1397, 2111
Bsu36I CCTNAGG 1 cut(s) 798
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 1 cut(s) 1011
BtgI CCRYGG 2 cut(s) 149, 1232
BtrI CACGTC 2 cut(s) 1187, 2360
BtsCI GGATG 5 cut(s) 142, 232, 376, 484, 1756
BtsI GCAGTG 1 cut(s) 1484
BtsIMutI CAGTG 6 cut(s) 263, 334, 352, 1484, 2191, 2428
BveI ACCTGC 2 cut(s) 951, 1158
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 6 cut(s) 334, 897, 1032, 1456, 2352, 2526
Cfr13I GGNCC 4 cut(s) 723, 1170, 1290, 1431
CseI GACGC 5 cut(s) 422, 457, 899, 1151, 2382
CsiI ACCWGGT 1 cut(s) 1582
Csp6I GTAC 4 cut(s) 24, 1157, 1852, 1979
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 3 cut(s) 118, 150, 2450
CviQI GTAC 4 cut(s) 24, 1157, 1852, 1979
DdeI CTNAG 8 cut(s) 171, 326, 426, 798, 1476, 1774, 1830, 2178
DinI GGCGCC 1 cut(s) 1031
DraI TTTAAA 1 cut(s) 2076
DraIII CACNNNGTG 1 cut(s) 1586
Eam1104I CTCTTC 6 cut(s) 1305, 1737, 1842, 1940, 2374, 2484
EarI CTCTTC 6 cut(s) 1305, 1737, 1842, 1940, 2374, 2484
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 4 cut(s) 149, 782, 1649, 2085
Eco24I GRGCYC 1 cut(s) 919
Eco31I GGTCTC 1 cut(s) 1317
Eco47I GGWCC 4 cut(s) 723, 1170, 1290, 1431
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 2 cut(s) 95, 2238
Eco81I CCTNAGG 1 cut(s) 798
Eco91I GGTNACC 2 cut(s) 963, 1266
EcoICRI GAGCTC 1 cut(s) 917
EcoNI CCTNNNNNAGG 3 cut(s) 1005, 1963, 2037
EcoO109I RGGNCCY 2 cut(s) 1170, 1290
EcoO65I GGTNACC 2 cut(s) 963, 1266
EcoRII CCWGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
EcoT14I CCWWGG 4 cut(s) 149, 782, 1649, 2085
EcoT22I ATGCAT 1 cut(s) 1249
EcoT38I GRGCYC 1 cut(s) 919
EgeI GGCGCC 1 cut(s) 1031
EheI GGCGCC 1 cut(s) 1031
ErhI CCWWGG 4 cut(s) 149, 782, 1649, 2085
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 3 cut(s) 121, 153, 2453
FalI AAGNNNNNCTT 2 cut(s) 835, 867
FaqI GGGAC 5 cut(s) 338, 643, 1156, 1276, 1710
FatI CATG 3 cut(s) 117, 149, 2449
FauI CCCGC 4 cut(s) 2, 1061, 1189, 1747
FauNDI CATATG 1 cut(s) 1627
FbaI TGATCA 2 cut(s) 34, 2140
Fnu4HI GCNGC 8 cut(s) 71, 510, 985, 1057, 1060, 1136, 1391, 1533
FokI GGATG 5 cut(s) 149, 239, 383, 491, 1763
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 8 cut(s) 71, 510, 985, 1057, 1060, 1136, 1391, 1533
FspBI CTAG 3 cut(s) 458, 621, 783
FspI TGCGCA 2 cut(s) 333, 2525
GlaI GCGC 6 cut(s) 333, 896, 1031, 1455, 2351, 2525
GluI GCNGC 8 cut(s) 71, 510, 985, 1057, 1060, 1136, 1391, 1533
GsuI CTGGAG 3 cut(s) 612, 1434, 2404
HaeII RGCGCY 3 cut(s) 1033, 1457, 2353
HaeIII GGCC 1 cut(s) 1011
HapII CCGG 1 cut(s) 2457
HgaI GACGC 5 cut(s) 422, 457, 899, 1151, 2382
HhaI GCGC 6 cut(s) 334, 897, 1032, 1456, 2352, 2526
Hin1I GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
Hin1II CATG 3 cut(s) 121, 153, 2453
Hin6I GCGC 6 cut(s) 332, 895, 1030, 1454, 2350, 2524
HinP1I GCGC 6 cut(s) 332, 895, 1030, 1454, 2350, 2524
HpaII CCGG 1 cut(s) 2457
Hpy166II GTNNAC 6 cut(s) 115, 674, 794, 1887, 2105, 2447
Hpy8I GTNNAC 6 cut(s) 115, 674, 794, 1887, 2105, 2447
HpyCH4III ACNGT 6 cut(s) 292, 363, 723, 1724, 2186, 2270
HpyCH4IV ACGT 7 cut(s) 955, 1111, 1145, 1186, 1306, 2359, 2389
HpyCH4V TGCA 9 cut(s) 92, 1247, 1258, 1408, 1489, 1532, 1589, 2282, 2396
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 79, 787, 894
HpyF3I CTNAG 8 cut(s) 171, 326, 426, 798, 1476, 1774, 1830, 2178
HpySE526I ACGT 7 cut(s) 955, 1111, 1145, 1186, 1306, 2359, 2389
Hsp92I GRCGYC 5 cut(s) 955, 1030, 1111, 1145, 1162
Hsp92II CATG 3 cut(s) 121, 153, 2453
HspAI GCGC 6 cut(s) 332, 895, 1030, 1454, 2350, 2524
KasI GGCGCC 1 cut(s) 1029
Ksp22I TGATCA 2 cut(s) 34, 2140
LmnI GCTCC 4 cut(s) 147, 517, 1654, 2365
Lsp1109I GCAGC 4 cut(s) 57, 496, 1402, 1544
LweI GCATC 6 cut(s) 361, 1256, 1741, 1880, 2033, 2416
MabI ACCWGGT 1 cut(s) 1582
MaeI CTAG 3 cut(s) 458, 621, 783
MaeII ACGT 7 cut(s) 955, 1111, 1145, 1186, 1306, 2359, 2389
MbiI CCGCTC 1 cut(s) 2067
MfeI CAATTG 3 cut(s) 417, 1983, 2283
MflI RGATCY 4 cut(s) 623, 1226, 1397, 2111
MhlI GDGCHC 2 cut(s) 144, 919
MluCI AATT 9 cut(s) 86, 98, 258, 417, 1659, 1818, 1983, 2283, 2519
Mly113I GGCGCC 1 cut(s) 1030
MlyI GAGTC 1 cut(s) 1991
MmeI TCCRAC 1 cut(s) 1132
Mph1103I ATGCAT 1 cut(s) 1249
MroXI GAANNNNTTC 1 cut(s) 1336
MseI TTAA 1 cut(s) 2075
MslI CAYNNNNRTG 1 cut(s) 2475
MspI CCGG 1 cut(s) 2457
MspR9I CCNGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
MunI CAATTG 3 cut(s) 417, 1983, 2283
MvaI CCWGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
MvnI CGCG 1 cut(s) 895
MwoI GCNNNNNNNGC 4 cut(s) 67, 79, 787, 894
NarI GGCGCC 1 cut(s) 1030
NcoI CCATGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 1627
NlaIII CATG 3 cut(s) 121, 153, 2453
NlaIV GGNNCC 4 cut(s) 519, 1031, 1172, 1292
NsbI TGCGCA 2 cut(s) 333, 2525
NsiI ATGCAT 1 cut(s) 1249
NspI RCATGY 1 cut(s) 2453
NspV TTCGAA 1 cut(s) 186
PciI ACATGT 1 cut(s) 2449
PcsI WCGNNNNNNNCGW 2 cut(s) 940, 2365
PdmI GAANNNNTTC 1 cut(s) 1336
PflMI CCANNNNNTGG 1 cut(s) 1277
PfoI TCCNGGA 1 cut(s) 949
PkrI GCNGC 8 cut(s) 72, 511, 986, 1058, 1061, 1137, 1392, 1534
PleI GAGTC 1 cut(s) 1991
PluTI GGCGCC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1991
PpuMI RGGWCCY 2 cut(s) 1170, 1290
PscI ACATGT 1 cut(s) 2449
PshAI GACNNNNGTC 3 cut(s) 1144, 1309, 1768
Psp124BI GAGCTC 1 cut(s) 919
Psp5II RGGWCCY 2 cut(s) 1170, 1290
Psp6I CCWGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
PspEI GGTNACC 2 cut(s) 963, 1266
PspGI CCWGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
PspN4I GGNNCC 4 cut(s) 519, 1031, 1172, 1292
PspPI GGNCC 4 cut(s) 723, 1170, 1290, 1431
PspPPI RGGWCCY 2 cut(s) 1170, 1290
PstI CTGCAG 1 cut(s) 1491
PsuI RGATCY 4 cut(s) 623, 1226, 1397, 2111
RsaI GTAC 4 cut(s) 25, 1158, 1853, 1980
RsaNI GTAC 4 cut(s) 24, 1157, 1852, 1979
RseI CAYNNNNRTG 1 cut(s) 2475
SacI GAGCTC 1 cut(s) 919
SaqAI TTAA 1 cut(s) 2075
SatI GCNGC 8 cut(s) 71, 510, 985, 1057, 1060, 1136, 1391, 1533
Sau96I GGNCC 4 cut(s) 723, 1170, 1290, 1431
ScaI AGTACT 1 cut(s) 1853
SchI GAGTC 1 cut(s) 1991
ScrFI CCNGG 6 cut(s) 859, 951, 1584, 2007, 2034, 2109
SduI GDGCHC 2 cut(s) 144, 919
SexAI ACCWGGT 1 cut(s) 1582
SfaNI GCATC 6 cut(s) 361, 1256, 1741, 1880, 2033, 2416
SfcI CTRYAG 2 cut(s) 903, 1487
SfoI GGCGCC 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 4 cut(s) 723, 1170, 1290, 1431
SmiMI CAYNNNNRTG 1 cut(s) 2475
SmlI CTYRAG 2 cut(s) 1678, 2510
SmoI CTYRAG 2 cut(s) 1678, 2510
Sse9I AATT 9 cut(s) 86, 98, 258, 417, 1659, 1818, 1983, 2283, 2519
SspDI GGCGCC 1 cut(s) 1029
SspMI CTAG 3 cut(s) 458, 621, 783
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 6 cut(s) 857, 949, 1582, 2005, 2032, 2107
StyI CCWWGG 4 cut(s) 149, 782, 1649, 2085
TaaI ACNGT 6 cut(s) 292, 363, 723, 1724, 2186, 2270
TaiI ACGT 7 cut(s) 958, 1114, 1148, 1189, 1309, 2362, 2392
TaqII GACCGA 1 cut(s) 787
TasI AATT 9 cut(s) 86, 98, 258, 417, 1659, 1818, 1983, 2283, 2519
TatI WGTACW 1 cut(s) 1851
TauI GCSGC 4 cut(s) 987, 1059, 1062, 1138
Tru1I TTAA 1 cut(s) 2075
Tru9I TTAA 1 cut(s) 2075
TscAI CASTG 6 cut(s) 270, 334, 352, 1491, 2191, 2428
TseI GCWGC 4 cut(s) 70, 509, 1390, 1532
TspDTI ATGAA 9 cut(s) 199, 207, 585, 639, 1329, 1644, 1958, 2459, 2499
TspGWI ACGGA 5 cut(s) 134, 1156, 1249, 1276, 1816
TspRI CASTG 6 cut(s) 270, 334, 352, 1491, 2191, 2428
Van91I CCANNNNNTGG 1 cut(s) 1277
VpaK11BI GGWCC 4 cut(s) 723, 1170, 1290, 1431
XagI CCTNNNNNAGG 3 cut(s) 1005, 1963, 2037
XapI RAATTY 2 cut(s) 86, 258
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 2453
XmaJI CCTAGG 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 1336
XspI CTAG 3 cut(s) 458, 621, 783
ZraI GACGTC 3 cut(s) 956, 1112, 1146
ZrmI AGTACT 1 cut(s) 1853
Zsp2I ATGCAT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.