Rorug05G0377700

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007711
Physical Location & Seq
Reverse (-)
51173166 .. 51176554
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0377700.1

Sequence Viewer

Length: 2031 bp
ATGGTGCAATATAATTTCAAGAAGATGACTGTTGTTCCCGGTGGGAAGGATTTCATTGATATTATCCTTTCTCGCACCCAGCGGCAGACCCCAACTGTAGTCCACAAGGGTTCTGCCATTGACCGCGTGCGTAAGTTCTATACGCGCAAAGTCAAACATACCCAAACAAATTTTCATGAGAAGCTCTCTACTATCATTGATGAATTTCCTAGGCTGGATGACATCCACCCTTTCTACGGCGATCTTCTGCATGTTCTCTACAACAAGGACCACTACAAGCTCGCACTCGGTCAAATAAATACTGCAAGGAACCTTACTTCTAAGATTGCTAAAGATTATGTCAAGTTATTGAAGTATAGTGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTCTTGGTCGTATGTGCACGGTTGTAAAGAGGATTGGCCCTAGTTTAGCTTATCTGGAACAAATTAGACAACACATGGCAAGGCTGCCTTCAATTGATCCAAACACCCGGACAATATTGATTTGCGGCTATCCCAATGTCGGAAAGAGTTCATTCATCAACAAGATCACCAGAGCCGATGTTGATGTCCAGCCTTATGCTTTTACTACAAAGTCACTCTTTGTGGGGCATACAGATTATAAGTTCTTGAGGTACCAGGTTATTGATACACCTGGGATTTTGGACCGACCATTTCAAGACCGTAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATTTGAGAGCTGCTGTTTTGTTCTTCTTGGACATCTCAGGGTCTTGTGGTTATACCATTGCCCAACAAGCTGCCCTTTTTCACAGCATTAAGTCTCTGTTCATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAGGGCATATCTGAGGAAGACATGAAGTTGGTCACAGAGATGAAAGCTGAAGCTATGAAGACTGTGATTGGTCAAGGAGGTGAGGCTACGAATGATGATAGGGTACTCTTGACCATGAGCACTTTGACCGAGGAGGGGGTTATCTCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTTGAGTTGAAGATGAAATCTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCGATGCCAAAGCCACGTGACCAAAAGGAAAGGCCTCCATGTATACCTCAGGCTGTTTTAGAAGCTAAGGCTAAGCAAGCAGCAGAGAAGGAAAAGAGAACTACTGAAAAGGATTTGGAGAATGAAAATGGTGGTGCGGGTGTATACTCAGCCAGTTTGAAGAAGAATTATATCCTAGCTAATGATGAGTGGAAAGAGGATATCATACCTGAAATTCTTGATGGGCACAATGTATTTGACTTTGTTGATCCCGATATTTTGGATAGGCTTGAGGAGTTAAAACGAGAAGAAGGAATCATGCAGGCAGATGTGGATGATGATGTGGAGATGGGTGGAATGGAGTTGACTCCAGAAGAGCAGAAGACATTGGTTCAGATAAGGAAAAAGAACAGCTTGCTGATTCAACAACATATAATCAAGAAAAGTACAGCGGAGAGTCGGCCTACAGTACCTAGGAAATTTGACAAGGACAGGGAGTTCACAACAAAGAGAATGGGGAGGCAGCTGTCAGAGTTGGGAATTGATCCTAGTATGGCAATTAACCGAGCCCGCAGCAGATCTCTCTCTAGGAGGGGCCGAAAGAGAGAGCGATCATTTGACAAGGGTGATAGTGAAGGTGGTGGTGTCATGGATATGGATGTGGATACACTCAACAAGAAGCTGCGCTTGATGTCTAGACCCCGTTCAAGGTCAAGATCTAGACCGCCTACTGATGTTGTCCCTGGTGATGGCTTTAAGGACTCTGATCAAAAGTCTAAAGCACTAGACAAGGCCCGGAAATCTGTGAAGAACAGAAACAAGAATGCTAGACGTGGAGAGGCAGACAGAGTTACTCCCAATTTGAAACCTAAGCACTTGTTCTCTGGAAAACGATCAAATGGAAAAACCCAAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

676

Amino Acids

76.93

Weight (kDa)

9.63

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 6 - 165 5.6e-59 NOG1 N-terminal helical domain
FeoB_N PF02421 170 - 319 2e-09 Ferrous iron transport protein B
MMR_HSR1 PF01926 171 - 290 6.5e-18 50S ribosome-binding GTPase
NOG1 PF06858 236 - 292 6.7e-25 Nucleolar GTP-binding protein 1 (NOG1)
NOGCT PF08155 410 - 463 1.7e-27 NOGCT (NUC087) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 2 cut(s) 1174, 1275
AccII CGCG 2 cut(s) 126, 145
AciI CCGC 7 cut(s) 82, 124, 522, 1268, 1562, 1681, 1835
AclWI GGATC 3 cut(s) 488, 1373, 1649
AcsI RAATTY 4 cut(s) 169, 203, 1344, 1589
AcuI CTGAAG 1 cut(s) 957
AcvI CACGTG 1 cut(s) 1148
AfaI GTAC 4 cut(s) 650, 993, 1558, 1581
AfiI CCNNNNNNNGG 6 cut(s) 236, 536, 890, 1023, 1818, 1859
AjiI CACGTC 1 cut(s) 1943
AjnI CCWGG 3 cut(s) 651, 667, 1852
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 2 cut(s) 1592, 1624
Alw21I GWGCWC 2 cut(s) 416, 1010
Alw26I GTCTC 2 cut(s) 389, 834
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 3 cut(s) 488, 1373, 1649
AoxI GGCC 5 cut(s) 433, 1163, 1571, 1705, 1902
ApaLI GTGCAC 1 cut(s) 412
ApoI RAATTY 4 cut(s) 169, 203, 1344, 1589
Asp700I GAANNNNTTC 2 cut(s) 50, 544
Asp718I GGTACC 1 cut(s) 648
AspA2I CCTAGG 2 cut(s) 209, 1583
AspLEI GCGC 3 cut(s) 147, 1797, 2028
AspS9I GGNCC 5 cut(s) 268, 434, 679, 1705, 1903
AsuC2I CCSGG 3 cut(s) 39, 505, 1906
AsuHPI GGTGA 4 cut(s) 556, 980, 1748, 1868
AvaII GGWCC 2 cut(s) 268, 679
AvrII CCTAGG 2 cut(s) 209, 1583
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 2 cut(s) 416, 1359
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 1 cut(s) 1681
BbrPI CACGTG 1 cut(s) 1148
BbsI GAAGAC 3 cut(s) 912, 953, 1499
Bbv12I GWGCWC 2 cut(s) 416, 1010
BccI CCATC 3 cut(s) 1346, 1453, 1853
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 3 cut(s) 653, 669, 1854
BciVI GTATCC 1 cut(s) 1768
BclI TGATCA 1 cut(s) 1876
BcnI CCSGG 3 cut(s) 39, 505, 1906
BcoDI GTCTC 2 cut(s) 389, 834
BfmI CTRYAG 2 cut(s) 96, 1575
BfoI RGCGCY 1 cut(s) 2029
BfuI GTATCC 1 cut(s) 1768
BglII AGATCT 2 cut(s) 1688, 1826
BlnI CCTAGG 2 cut(s) 209, 1583
BlpI GCTNAGC 1 cut(s) 1203
Bme1390I CCNGG 6 cut(s) 39, 505, 653, 669, 1854, 1906
Bme18I GGWCC 2 cut(s) 268, 679
BmgBI CACGTC 1 cut(s) 1943
BmgT120I GGNCC 5 cut(s) 268, 434, 679, 1705, 1903
BmiI GGNNCC 3 cut(s) 311, 650, 1706
BmrFI CCNGG 6 cut(s) 39, 505, 653, 669, 1854, 1906
BmsI GCATC 3 cut(s) 365, 729, 1125
BpiI GAAGAC 3 cut(s) 912, 953, 1499
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 1464
Bpu10I CCTNAGC 2 cut(s) 1197, 1980
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 3 cut(s) 371, 664, 1421
BpuMI CCSGG 3 cut(s) 39, 505, 1906
BsaAI YACGTR 1 cut(s) 1148
BsaJI CCNNGG 5 cut(s) 209, 668, 1017, 1583, 1852
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 536, 890, 1023, 1818, 1859
Bse1I ACTGG 1 cut(s) 1284
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 3 cut(s) 653, 669, 1854
BseDI CCNNGG 5 cut(s) 209, 668, 1017, 1583, 1852
BseGI GGATG 4 cut(s) 222, 223, 1450, 1774
BseLI CCNNNNNNNGG 6 cut(s) 236, 536, 890, 1023, 1818, 1859
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 4 cut(s) 786, 891, 1193, 1293
BseNI ACTGG 1 cut(s) 1284
BseRI GAGGAG 2 cut(s) 1034, 1418
BseSI GKGCMC 2 cut(s) 416, 1359
BseYI CCCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 2 cut(s) 126, 145
BshFI GGCC 5 cut(s) 435, 1165, 1573, 1707, 1904
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 416, 1010
BsiSI CCGG 3 cut(s) 39, 505, 1906
BslFI GGGAC 1 cut(s) 1835
BslI CCNNNNNNNGG 6 cut(s) 236, 536, 890, 1023, 1818, 1859
BsmAI GTCTC 2 cut(s) 389, 834
BsmFI GGGAC 1 cut(s) 1835
BsmI GAATGC 2 cut(s) 1048, 1939
BsnI GGCC 5 cut(s) 435, 1165, 1573, 1707, 1904
Bsp1286I GDGCHC 4 cut(s) 416, 1010, 1359, 1681
Bsp1720I GCTNAGC 1 cut(s) 1203
BspACI CCGC 7 cut(s) 82, 124, 522, 1268, 1562, 1681, 1835
BspANI GGCC 5 cut(s) 435, 1165, 1573, 1707, 1904
BspCNI CTCAG 4 cut(s) 785, 892, 1192, 1292
BspFNI CGCG 2 cut(s) 126, 145
BspHI TCATGA 2 cut(s) 175, 837
BspLI GGNNCC 3 cut(s) 311, 650, 1706
BspPI GGATC 3 cut(s) 488, 1373, 1649
BspQI GCTCTTC 1 cut(s) 1479
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 1 cut(s) 1284
BssECI CCNNGG 5 cut(s) 209, 668, 1017, 1583, 1852
BssNAI GTATAC 2 cut(s) 1175, 1276
BssT1I CCWWGG 2 cut(s) 209, 1583
Bst1107I GTATAC 2 cut(s) 1175, 1276
Bst2UI CCWGG 3 cut(s) 653, 669, 1854
Bst4CI ACNGT 6 cut(s) 31, 97, 418, 698, 952, 1579
Bst6I CTCTTC 1 cut(s) 1479
BstBAI YACGTR 1 cut(s) 1148
BstC8I GCNNGC 6 cut(s) 128, 282, 1209, 1434, 1526, 1681
BstDEI CTNAG 8 cut(s) 321, 772, 900, 1179, 1197, 1203, 1279, 1980
BstF5I GGATG 4 cut(s) 222, 223, 1450, 1774
BstFNI CGCG 2 cut(s) 126, 145
BstH2I RGCGCY 1 cut(s) 2029
BstHHI GCGC 3 cut(s) 147, 1797, 2028
BstMAI GTCTC 2 cut(s) 389, 834
BstMWI GCNNNNNNNGC 2 cut(s) 803, 1208
BstNI CCWGG 3 cut(s) 653, 669, 1854
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 6 cut(s) 37, 503, 651, 667, 1852, 1904
BstSFI CTRYAG 2 cut(s) 96, 1575
BstSLI GKGCMC 2 cut(s) 416, 1359
BstUI CGCG 2 cut(s) 126, 145
BstV2I GAAGAC 3 cut(s) 912, 953, 1499
BstX2I RGATCY 2 cut(s) 1688, 1826
BstYI RGATCY 2 cut(s) 1688, 1826
BstZ17I GTATAC 2 cut(s) 1175, 1276
Bsu36I CCTNAGG 1 cut(s) 1179
BsuI GTATCC 1 cut(s) 1768
BsuRI GGCC 5 cut(s) 435, 1165, 1573, 1707, 1904
BtgZI GCGATG 1 cut(s) 1148
BtrI CACGTC 1 cut(s) 1943
BtsCI GGATG 4 cut(s) 222, 223, 1450, 1774
Cac8I GCNNGC 6 cut(s) 128, 282, 1209, 1434, 1526, 1681
CciI TCATGA 2 cut(s) 175, 837
CfoI GCGC 3 cut(s) 147, 1797, 2028
Cfr13I GGNCC 5 cut(s) 268, 434, 679, 1705, 1903
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 4 cut(s) 649, 992, 1557, 1580
CviQI GTAC 4 cut(s) 649, 992, 1557, 1580
DdeI CTNAG 8 cut(s) 321, 772, 900, 1179, 1197, 1203, 1279, 1980
DraI TTTAAA 1 cut(s) 1116
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
Eco130I CCWWGG 2 cut(s) 209, 1583
Eco147I AGGCCT 1 cut(s) 1165
Eco24I GRGCYC 1 cut(s) 1681
Eco32I GATATC 1 cut(s) 1333
Eco47I GGWCC 2 cut(s) 268, 679
Eco57I CTGAAG 1 cut(s) 957
Eco72I CACGTG 1 cut(s) 1148
Eco81I CCTNAGG 1 cut(s) 1179
EcoRII CCWGG 3 cut(s) 651, 667, 1852
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 2 cut(s) 209, 1583
EcoT38I GRGCYC 1 cut(s) 1681
ErhI CCWWGG 2 cut(s) 209, 1583
FaqI GGGAC 1 cut(s) 1835
FauI CCCGC 2 cut(s) 1261, 1688
FbaI TGATCA 1 cut(s) 1876
FblI GTMKAC 2 cut(s) 1174, 1275
FokI GGATG 4 cut(s) 209, 230, 1457, 1781
FriOI GRGCYC 1 cut(s) 1681
GlaI GCGC 3 cut(s) 146, 1796, 2027
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 1464
HaeII RGCGCY 1 cut(s) 2029
HaeIII GGCC 5 cut(s) 435, 1165, 1573, 1707, 1904
HapII CCGG 3 cut(s) 39, 505, 1906
HhaI GCGC 3 cut(s) 147, 1797, 2028
Hin6I GCGC 3 cut(s) 145, 1795, 2026
HinP1I GCGC 3 cut(s) 145, 1795, 2026
HincII GTYRAC 1 cut(s) 1476
HindII GTYRAC 1 cut(s) 1476
HinfI GANTC 8 cut(s) 362, 382, 1066, 1425, 1477, 1531, 1567, 1871
HpaII CCGG 3 cut(s) 39, 505, 1906
HphI GGTGA 4 cut(s) 556, 980, 1748, 1868
Hpy166II GTNNAC 6 cut(s) 103, 414, 1175, 1276, 1476, 1611
Hpy188I TCNGA 6 cut(s) 539, 901, 1071, 1506, 1642, 1876
Hpy8I GTNNAC 6 cut(s) 103, 414, 1175, 1276, 1476, 1611
HpyAV CCTTC 5 cut(s) 40, 495, 1213, 1415, 1739
HpyCH4III ACNGT 6 cut(s) 31, 97, 418, 698, 952, 1579
HpyCH4IV ACGT 2 cut(s) 1147, 1942
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 1208
HpyF3I CTNAG 8 cut(s) 321, 772, 900, 1179, 1197, 1203, 1279, 1980
HpySE526I ACGT 2 cut(s) 1147, 1942
HspAI GCGC 3 cut(s) 145, 1795, 2026
KpnI GGTACC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 1876
LguI GCTCTTC 1 cut(s) 1479
LweI GCATC 3 cut(s) 365, 729, 1125
MabI ACCWGGT 1 cut(s) 651
MaeII ACGT 2 cut(s) 1147, 1942
MaeIII GTNAC 5 cut(s) 609, 698, 919, 1148, 1960
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 1688, 1826
MhlI GDGCHC 4 cut(s) 416, 1010, 1359, 1681
MlyI GAGTC 4 cut(s) 391, 1471, 1576, 1865
MmeI TCCRAC 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 50, 544
MseI TTAA 5 cut(s) 825, 1115, 1409, 1671, 1866
MslI CAYNNNNRTG 2 cut(s) 926, 1763
MspA1I CMGCKG 3 cut(s) 82, 1562, 1636
MspI CCGG 3 cut(s) 39, 505, 1906
MspR9I CCNGG 6 cut(s) 39, 505, 653, 669, 1854, 1906
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 2 cut(s) 1048, 1939
MvaI CCWGG 3 cut(s) 653, 669, 1854
MvnI CGCG 2 cut(s) 126, 145
MwoI GCNNNNNNNGC 2 cut(s) 803, 1208
NciI CCSGG 3 cut(s) 39, 505, 1906
NlaIV GGNNCC 3 cut(s) 311, 650, 1706
NmuCI GTSAC 3 cut(s) 609, 919, 1148
NspI RCATGY 1 cut(s) 254
PagI TCATGA 2 cut(s) 175, 837
PceI AGGCCT 1 cut(s) 1165
PciSI GCTCTTC 1 cut(s) 1479
PctI GAATGC 2 cut(s) 1048, 1939
PdmI GAANNNNTTC 2 cut(s) 50, 544
PfeI GAWTC 4 cut(s) 362, 1066, 1425, 1531
PleI GAGTC 4 cut(s) 390, 1471, 1575, 1865
PmaCI CACGTG 1 cut(s) 1148
PmlI CACGTG 1 cut(s) 1148
PpsI GAGTC 4 cut(s) 390, 1471, 1575, 1865
Ppu21I YACGTR 1 cut(s) 1148
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 3 cut(s) 651, 667, 1852
PspCI CACGTG 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 3 cut(s) 651, 667, 1852
PspN4I GGNNCC 3 cut(s) 311, 650, 1706
PspPI GGNCC 5 cut(s) 268, 434, 679, 1705, 1903
PsuI RGATCY 2 cut(s) 1688, 1826
PvuII CAGCTG 1 cut(s) 1636
RsaI GTAC 4 cut(s) 650, 993, 1558, 1581
RsaNI GTAC 4 cut(s) 649, 992, 1557, 1580
RseI CAYNNNNRTG 2 cut(s) 926, 1763
SapI GCTCTTC 1 cut(s) 1479
SaqAI TTAA 5 cut(s) 825, 1115, 1409, 1671, 1866
Sau96I GGNCC 5 cut(s) 268, 434, 679, 1705, 1903
SchI GAGTC 4 cut(s) 391, 1471, 1576, 1865
ScrFI CCNGG 6 cut(s) 39, 505, 653, 669, 1854, 1906
SduI GDGCHC 4 cut(s) 416, 1010, 1359, 1681
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 3 cut(s) 365, 729, 1125
SfcI CTRYAG 2 cut(s) 96, 1575
SinI GGWCC 2 cut(s) 268, 679
SmiMI CAYNNNNRTG 2 cut(s) 926, 1763
SmlI CTYRAG 3 cut(s) 386, 643, 1400
SmoI CTYRAG 3 cut(s) 386, 643, 1400
SseBI AGGCCT 1 cut(s) 1165
SsiI CCGC 7 cut(s) 82, 124, 522, 1268, 1562, 1681, 1835
SspI AATATT 1 cut(s) 513
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 6 cut(s) 37, 503, 651, 667, 1852, 1904
StyI CCWWGG 2 cut(s) 209, 1583
TaaI ACNGT 6 cut(s) 31, 97, 418, 698, 952, 1579
TaiI ACGT 2 cut(s) 1150, 1945
TaqII GACCGA 3 cut(s) 278, 696, 1031
TatI WGTACW 1 cut(s) 1556
TauI GCSGC 2 cut(s) 85, 525
TfiI GAWTC 4 cut(s) 362, 1066, 1425, 1531
Tru1I TTAA 5 cut(s) 825, 1115, 1409, 1671, 1866
Tru9I TTAA 5 cut(s) 825, 1115, 1409, 1671, 1866
TseFI GTSAC 3 cut(s) 609, 919, 1148
Tsp45I GTSAC 3 cut(s) 609, 919, 1148
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 268, 679
XapI RAATTY 4 cut(s) 169, 203, 1344, 1589
XbaI TCTAGA 2 cut(s) 1805, 1829
XceI RCATGY 1 cut(s) 254
XmaJI CCTAGG 2 cut(s) 209, 1583
XmiI GTMKAC 2 cut(s) 1174, 1275
XmnI GAANNNNTTC 2 cut(s) 50, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.