Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007711

Physical Location & Seq

Genomic Coordinates Forward (+)

74196305 .. 74198068

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAGGAGAACAACAAAGCAGCAGAGATCTCCCCTGCAATCCCACCAAGAAAGAACAAGGTCCATTGAGAACCTGTCTCCAGCGCCACAACAATCTTCTGGTTCTGAGGGGTCACTGCAGAGGGAATCGAAGAATGGAAATGATTACCGCAAAAGAGTTGCAGCTTTGTCACCATCACCAGAGAAGTCTCCTCCAATGTCAGAATCTCCACCAGGTGCAAGGAGTGTGAGGGAAAAGAGGAGATTGTCCAGTCCATATGAAAGTCCTGTGAAACGACCAAGGGAGCAAATTGCTCGTTATGGTAGCTCAAGTCCTTCAAGGAAACCAAGAGAACAAAAACTTCGTCGTGACAGTCCCAAAGAAAGTGAAGAAGAGGAGGATGCGGGTAACAGACCCAAGTCCTTAGAGAGAAGATCAAGAGACACATCACGGATCAGTAAGCAGATAATTTCTCCTGCTAAGATTCCTAATAAGGAAGAGTACTCTCCTGAAAGAGTAGCATCTGGTCAAAGGTTTACTGAATCTAAAAGCTATTTGGATAATACTGAAAGAAGAAACAAAGAGCAGGAAATGAAGAGTGGAAAATCCTCTGGGAGGGGGTCAAATGTACCAATTGTCTATAAAGACTATCTGCCAGGTGAGACACAACGGGCATCAAATCCTGGTGAAGGTAAAAAAGCTGATGATAAGAACCGCTCTCAATTAAAGAATACCAAGGACAGCGAACATCGTAAACCTGGATCTTTACGCTCATCTGTTGAAATGATTGATCATAGTAATCAGAGTGGCGGTTTGGATTCTGGTTCTGAGGACAGTGACAAAGGCAGAAGCGAAGACAAGGAAAAGAGAAAGAATAAGAGATCAGAGAGGCAAGAAGTGACTTCAGATGATGATTACAGTTATGATTCTGCAATTGAGGACAGAAAGGAGGCTAAAAGGAGGAGGAAAGAGGAAAAGAGGTTGCGGAAGGAGAAGAAGCGCCGAAGACGTGAGGAGCGACGACGCAGAAGGGAAGAACGTCGTGCAGAGAAGCAGAAAGTGAAGAACTCCAGTGATGCTTCTGGTTCAGATGGTGAACATGTCACCGGAAGGGGGTTTCATTCAAGTGACAATGAAGAAGAGGCTGTTAAGAAGAAACTTGAGATTGAATTGCGCAAGAAGGCTCTCGAATCACTCAAAGCAAAAAAGGGCATCAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

PWI

Protein Analysis

400

Amino Acids

45.97

Weight (kDa)

10.07

Isoelectric Point (pI)

102.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29210 AT2G29210
fragaria_vesca	FvH4_3g36942 FvH4_3g36942 FvH4_3g36942 FvH4_3g36942
malus_domestica	MD03G1086100.v1.1 MD11G1094700.v1.1
prunus_persica	Prupe.6G070300_v2.0.a1
pyrus_communis	pycom11g08040
rosa_chinensis	RchiOBHm_Chr5g0066361
rosa_laevigata	RLG00000035854
rosa_multiflora	Rmu_ssc0000249.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014780
rosa_rugosa	Rorug05G0377600 Rorug05G0377700 Rorug05G0377700 Rorug05G0377800
rosa_samantha	Rh5AG436100 Rh5BG452500 Rh5CG474900 Rh5DG467500 Rh5DG467600
rosa_wichuraiana	Rw5G040850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1154
AccBSI	CCGCTC	1 cut(s)	696
AciI	CCGC	5 cut(s)	148, 383, 694, 789, 964
AclWI	GGATC	2 cut(s)	440, 748
AcuI	CTGAAG	1 cut(s)	867
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	482, 609
AfiI	CCNNNNNNNGG	3 cut(s)	594, 668, 1092
AflIII	ACRYGT	1 cut(s)	1078
AgsI	TTSAA	4 cut(s)	318, 761, 1104, 1148
AjiI	CACGTC	1 cut(s)	989
AjnI	CCWGG	4 cut(s)	211, 634, 661, 736
AluBI	AGCT	4 cut(s)	164, 306, 531, 680
AluI	AGCT	4 cut(s)	164, 306, 531, 680
Alw26I	GTCTC	4 cut(s)	81, 192, 414, 635
AlwI	GGATC	2 cut(s)	440, 748
ApeKI	GCWGC	2 cut(s)	19, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	3 cut(s)	85, 981, 1155
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	6 cut(s)	162, 168, 650, 677, 1075, 1085
AvaII	GGWCC	1 cut(s)	60
BbsI	GAAGAC	2 cut(s)	840, 991
BbvI	GCAGC	2 cut(s)	31, 173
BccI	CCATC	2 cut(s)	181, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	4 cut(s)	213, 636, 663, 738
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	4 cut(s)	81, 192, 414, 635
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	2 cut(s)	86, 982
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	2 cut(s)	20, 162
BlsI	GCNGC	2 cut(s)	21, 163
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	4 cut(s)	213, 636, 663, 738
Bme18I	GGWCC	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	60
BmrFI	CCNGG	4 cut(s)	213, 636, 663, 738
BmsI	GCATC	4 cut(s)	370, 509, 662, 1045
BoxI	GACNNNNGTC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	840, 991
BpmI	CTGGAG	2 cut(s)	63, 1033
BpuEI	CTTGAG	2 cut(s)	292, 1160
BsaJI	CCNNGG	2 cut(s)	278, 714
BsaWI	WCCGGW	1 cut(s)	1085
Bsc4I	CCNNNNNNNGG	3 cut(s)	594, 668, 1092
Bse1I	ACTGG	2 cut(s)	249, 1050
BseBI	CCWGG	4 cut(s)	213, 636, 663, 738
BseDI	CCNNGG	2 cut(s)	278, 714
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	594, 668, 1092
BseMII	CTCAG	2 cut(s)	96, 798
BseNI	ACTGG	2 cut(s)	249, 1050
BseRI	GAGGAG	6 cut(s)	19, 180, 253, 389, 955, 1007
BseXI	GCAGC	2 cut(s)	31, 173
BsgI	GTGCAG	1 cut(s)	1044
BsiSI	CCGG	1 cut(s)	1086
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	594, 668, 1092
BsmAI	GTCTC	4 cut(s)	81, 192, 414, 635
BsmFI	GGGAC	1 cut(s)	339
Bsp143I	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
BspACI	CCGC	5 cut(s)	148, 383, 694, 789, 964
BspCNI	CTCAG	2 cut(s)	97, 799
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	2 cut(s)	440, 748
BsrBI	CCGCTC	1 cut(s)	696
BsrI	ACTGG	2 cut(s)	249, 1050
BssECI	CCNNGG	2 cut(s)	278, 714
BssMI	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
BssT1I	CCWWGG	2 cut(s)	278, 714
Bst2UI	CCWGG	4 cut(s)	213, 636, 663, 738
Bst4CI	ACNGT	3 cut(s)	353, 815, 899
Bst6I	CTCTTC	4 cut(s)	366, 471, 569, 1113
BstDEI	CTNAG	4 cut(s)	105, 403, 459, 807
BstENI	CCTNNNNNAGG	2 cut(s)	592, 666
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	2 cut(s)	86, 982
BstHHI	GCGC	3 cut(s)	85, 981, 1155
BstKTI	GATC	6 cut(s)	29, 416, 435, 743, 772, 863
BstMAI	GTCTC	4 cut(s)	81, 192, 414, 635
BstMBI	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
BstNI	CCWGG	4 cut(s)	213, 636, 663, 738
BstNSI	RCATGY	1 cut(s)	1082
BstPAI	GACNNNNGTC	1 cut(s)	397
BstSCI	CCNGG	4 cut(s)	211, 634, 661, 736
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	31, 173
BstV2I	GAAGAC	2 cut(s)	840, 991
BstX2I	RGATCY	2 cut(s)	26, 740
BstYI	RGATCY	2 cut(s)	26, 740
BtrI	CACGTC	1 cut(s)	989
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	3 cut(s)	113, 820, 1057
CfoI	GCGC	3 cut(s)	85, 981, 1155
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	1011
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	481, 608
CviAII	CATG	1 cut(s)	1079
CviJI	RGCY	7 cut(s)	164, 306, 531, 680, 932, 1124, 1163
CviKI_1	RGCY	7 cut(s)	164, 306, 531, 680, 932, 1124, 1163
CviQI	GTAC	2 cut(s)	481, 608
DdeI	CTNAG	4 cut(s)	105, 403, 459, 807
DpnI	GATC	6 cut(s)	28, 415, 434, 742, 771, 862
DpnII	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
DraIII	CACNNNGTG	1 cut(s)	215
Eam1104I	CTCTTC	4 cut(s)	366, 471, 569, 1113
EarI	CTCTTC	4 cut(s)	366, 471, 569, 1113
Eco130I	CCWWGG	2 cut(s)	278, 714
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	867
EcoNI	CCTNNNNNAGG	2 cut(s)	592, 666
EcoRII	CCWGG	4 cut(s)	211, 634, 661, 736
EcoT14I	CCWWGG	2 cut(s)	278, 714
ErhI	CCWWGG	2 cut(s)	278, 714
FaeI	CATG	1 cut(s)	1082
FaiI	YATR	7 cut(s)	256, 258, 300, 621, 774, 903, 1080
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	1078
FauI	CCCGC	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	2 cut(s)	20, 162
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	20, 162
FspI	TGCGCA	1 cut(s)	1154
GlaI	GCGC	3 cut(s)	84, 980, 1154
GluI	GCNGC	2 cut(s)	20, 162
GsuI	CTGGAG	2 cut(s)	63, 1033
HaeII	RGCGCY	2 cut(s)	86, 982
HapII	CCGG	1 cut(s)	1086
HgaI	GACGC	1 cut(s)	1011
HhaI	GCGC	3 cut(s)	85, 981, 1155
Hin1II	CATG	1 cut(s)	1082
Hin6I	GCGC	3 cut(s)	83, 979, 1153
HinP1I	GCGC	3 cut(s)	83, 979, 1153
HinfI	GANTC	7 cut(s)	125, 203, 463, 521, 797, 905, 1169
HpaII	CCGG	1 cut(s)	1086
HphI	GGTGA	6 cut(s)	162, 168, 650, 677, 1075, 1085
Hpy166II	GTNNAC	3 cut(s)	516, 734, 1076
Hpy188I	TCNGA	7 cut(s)	106, 202, 783, 808, 865, 886, 1069
Hpy188III	TCNNGA	4 cut(s)	347, 417, 488, 1166
Hpy8I	GTNNAC	3 cut(s)	516, 734, 1076
Hpy99I	CGWCG	4 cut(s)	348, 1002, 1005, 1023
HpyAV	CCTTC	6 cut(s)	324, 662, 961, 1002, 1083, 1153
HpyCH4III	ACNGT	3 cut(s)	353, 815, 899
HpyCH4IV	ACGT	2 cut(s)	988, 1018
HpyCH4V	TGCA	6 cut(s)	37, 118, 161, 218, 911, 1025
HpyF3I	CTNAG	4 cut(s)	105, 403, 459, 807
HpySE526I	ACGT	2 cut(s)	988, 1018
Hsp92II	CATG	1 cut(s)	1082
HspAI	GCGC	3 cut(s)	83, 979, 1153
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
LmnI	GCTCC	2 cut(s)	283, 994
Lsp1109I	GCAGC	2 cut(s)	31, 173
LweI	GCATC	4 cut(s)	370, 509, 662, 1045
MabI	ACCWGGT	1 cut(s)	211
MaeII	ACGT	2 cut(s)	988, 1018
MaeIII	GTNAC	8 cut(s)	111, 168, 347, 386, 815, 877, 1081, 1106
MalI	GATC	6 cut(s)	28, 415, 434, 742, 771, 862
MbiI	CCGCTC	1 cut(s)	696
MboI	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
MfeI	CAATTG	2 cut(s)	612, 912
MflI	RGATCY	2 cut(s)	26, 740
MluCI	AATT	6 cut(s)	288, 447, 612, 701, 912, 1148
MseI	TTAA	2 cut(s)	704, 1128
MslI	CAYNNNNRTG	1 cut(s)	1104
MspI	CCGG	1 cut(s)	1086
MspR9I	CCNGG	4 cut(s)	213, 636, 663, 738
MunI	CAATTG	2 cut(s)	612, 912
MvaI	CCWGG	4 cut(s)	213, 636, 663, 738
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
NlaIII	CATG	1 cut(s)	1082
NmuCI	GTSAC	7 cut(s)	111, 168, 347, 815, 877, 1081, 1106
NsbI	TGCGCA	1 cut(s)	1154
NspI	RCATGY	1 cut(s)	1082
PciI	ACATGT	1 cut(s)	1078
PcsI	WCGNNNNNNNCGW	1 cut(s)	994
PfeI	GAWTC	7 cut(s)	125, 203, 463, 521, 797, 905, 1169
PkrI	GCNGC	2 cut(s)	21, 163
PscI	ACATGT	1 cut(s)	1078
PshAI	GACNNNNGTC	1 cut(s)	397
Psp6I	CCWGG	4 cut(s)	211, 634, 661, 736
PspGI	CCWGG	4 cut(s)	211, 634, 661, 736
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	26, 740
RsaI	GTAC	2 cut(s)	482, 609
RsaNI	GTAC	2 cut(s)	481, 608
RseI	CAYNNNNRTG	1 cut(s)	1104
SaqAI	TTAA	2 cut(s)	704, 1128
SatI	GCNGC	2 cut(s)	20, 162
Sau3AI	GATC	6 cut(s)	26, 413, 432, 740, 769, 860
Sau96I	GGNCC	1 cut(s)	60
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	4 cut(s)	213, 636, 663, 738
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	4 cut(s)	370, 509, 662, 1045
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SmlI	CTYRAG	2 cut(s)	307, 1139
SmoI	CTYRAG	2 cut(s)	307, 1139
Sse9I	AATT	6 cut(s)	288, 447, 612, 701, 912, 1148
SsiI	CCGC	5 cut(s)	148, 383, 694, 789, 964
StyD4I	CCNGG	4 cut(s)	211, 634, 661, 736
StyI	CCWWGG	2 cut(s)	278, 714
TaaI	ACNGT	3 cut(s)	353, 815, 899
TaiI	ACGT	2 cut(s)	991, 1021
TaqI	TCGA	2 cut(s)	128, 1167
TasI	AATT	6 cut(s)	288, 447, 612, 701, 912, 1148
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	7 cut(s)	125, 203, 463, 521, 797, 905, 1169
Tru1I	TTAA	2 cut(s)	704, 1128
Tru9I	TTAA	2 cut(s)	704, 1128
TscAI	CASTG	3 cut(s)	120, 820, 1057
TseFI	GTSAC	7 cut(s)	111, 168, 347, 815, 877, 1081, 1106
TseI	GCWGC	2 cut(s)	19, 161
Tsp45I	GTSAC	7 cut(s)	111, 168, 347, 815, 877, 1081, 1106
TspDTI	ATGAA	4 cut(s)	273, 587, 1088, 1128
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	3 cut(s)	120, 820, 1057
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	2 cut(s)	592, 666
XceI	RCATGY	1 cut(s)	1082
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.