Rorug05G0377800

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007711
Physical Location & Seq
Reverse (-)
51178880 .. 51180429
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0377800.1

Sequence Viewer

Length: 1305 bp
ATGGCGTTGCCCTGCTCCTTAGCATTTCAGGTTAATCGAACCCAGCCACAACTTATAACTCCGGCAAGGCCAACTCCTCGTGAAACAAAGATGCTGTCAGACATAGATGACCAGCAAGGCCTTAGGTTTCAGATACCAATCATCATAGCCTACAAGAAGAATCCTTCAATGTCGAACCAAAAAGACCTCGTTCAGGTTATCAGGCAAGCAATAAGTAGAGCATTGGTGTATTACTACCCTTTGGCAGGTAGGCTCAGGGAAGGGCCTAACAGAAAGCTTATGGTGGATTGCACCGGAGAAGGTGTCTTGTTCGTTGAGGCTAATGCTGACGTTACTCTCGAGGAAATTGTAGATGCTATTCGACCCCCTTGCCCTGTGTTAGAGGACTTCCTAAGTAATGTCCTGGGCTCGGATGGCATTCTTGGTTGCCCTTTGTTGTTAGTTCAGGTGACCATTTTGAGATGCGGAGGTTTCATATTTGCATTGCGCCTAAACCACACAATGTGTGATGCGCCTGGATTGGTCCAGTTCTTGAACACAGTAGGGGAGATGGCTCAAGGAAAAAATGCACCATCTATTCTACCAGTGTGGGAGCGACAGGTCTTGAATGCCAGAGATCCACCACGAATTACATGTATACATCACGAATACGAGGAAATGATTGACTACTCAGATCAGGGCTATGATGCGGCAGTAATGGTGCAAAAATCTTTCTACTTTGGTCCCAAGGAGATAAGGGCCATGAAAAAGCATCTTCCACCACACCTTTCCAATTGCTCTACATTCGACCTTATAACATCCTGTTTGTGGAAATGCCACACAATTGCACTAGAACTTAATCCAGAACAGGTTGTTCGGGTTTCATGCATAGTCAATGCACGTGGGAAGCGCAACAATCTCCGTCTTCCTTTGGGTTACTACGGCAATGCATTCGCATACCCAGCTGTTGTTTCGGGAGTGAAACAATTGTGTGAAAGTCTGTTGGGATATGCACTAGAGTTGGTGATGAAGGTTAAAGATGAAATGAATGAAGAGTACATGAGATCAGTGGCCGATCTTATGGTCCTAAGAGGACGGCCTCTATATACATTGAACGGGAACTTCATAGTTTCAGATAATACACGTACTGGCTTTGGAGAGGTCAACTTGGGGTGGGGAAAGCCAGCATTTTCTGGACCTCCCAAGGCCTTGAACCTTGTTAGTTTCTATGTCCAGCACAAAACGGAAAAGAGGACAGGATTTTGGTGCCAGTGTGCTTGCCATTATGGAGTATGGCGAGATTTCAGCAGGAACTCGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

434

Amino Acids

48.84

Weight (kDa)

8.64

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 393 4.3e-70 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 56, 794
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 637
AciI CCGC 2 cut(s) 465, 689
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 1 cut(s) 1050
AcvI CACGTG 1 cut(s) 881
AdeI CACNNNGTG 1 cut(s) 504
AfaI GTAC 2 cut(s) 1037, 1126
AfiI CCNNNNNNNGG 4 cut(s) 193, 245, 409, 807
AflIII ACRYGT 2 cut(s) 632, 1121
AgsI TTSAA 5 cut(s) 168, 535, 607, 1093, 1192
AjnI CCWGG 2 cut(s) 402, 514
AluBI AGCT 2 cut(s) 277, 944
AluI AGCT 2 cut(s) 277, 944
AlwI GGATC 1 cut(s) 611
Ama87I CYCGRG 2 cut(s) 338, 1294
AoxI GGCC 7 cut(s) 68, 118, 263, 738, 1050, 1076, 1185
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspLEI GCGC 3 cut(s) 489, 514, 891
AspS9I GGNCC 6 cut(s) 263, 523, 722, 738, 1063, 1175
AsuHPI GGTGA 2 cut(s) 460, 1015
AvaI CYCGRG 2 cut(s) 338, 1294
AvaII GGWCC 4 cut(s) 523, 722, 1063, 1175
AxyI CCTNAGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 1245
BanII GRGCYC 1 cut(s) 410
BauI CACGAG 1 cut(s) 78
BbrPI CACGTG 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 896
BccI CCATC 3 cut(s) 407, 544, 580
BceAI ACGGC 2 cut(s) 937, 1091
BcgI CGANNNNNNTGC 4 cut(s) 351, 385, 913, 947
BciT130I CCWGG 2 cut(s) 404, 516
BfaI CTAG 2 cut(s) 830, 995
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
Bme1390I CCNGG 2 cut(s) 404, 516
Bme18I GGWCC 4 cut(s) 523, 722, 1063, 1175
BmeT110I CYCGRG 2 cut(s) 338, 1294
BmgT120I GGNCC 6 cut(s) 263, 523, 722, 738, 1063, 1175
BmiI GGNNCC 2 cut(s) 724, 1247
BmrFI CCNGG 2 cut(s) 404, 516
BmsI GCATC 6 cut(s) 81, 343, 452, 499, 676, 760
BpiI GAAGAC 1 cut(s) 896
Bpu10I CCTNAGC 2 cut(s) 19, 254
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 2 cut(s) 881, 1124
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 403, 726, 1182
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 245, 409, 807
Bse1I ACTGG 4 cut(s) 526, 584, 1132, 1249
Bse21I CCTNAGG 1 cut(s) 122
Bse3DI GCAATG 2 cut(s) 482, 931
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 2 cut(s) 404, 516
BseDI CCNNGG 3 cut(s) 403, 726, 1182
BseGI GGATG 2 cut(s) 418, 797
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 4 cut(s) 193, 245, 409, 807
BseMI GCAATG 2 cut(s) 482, 931
BseMII CTCAG 2 cut(s) 268, 684
BseNI ACTGG 4 cut(s) 526, 584, 1132, 1249
BseRI GAGGAG 1 cut(s) 66
BseYI CCCAGC 2 cut(s) 42, 940
BshFI GGCC 7 cut(s) 70, 120, 265, 740, 1052, 1078, 1187
BshNI GGYRCC 1 cut(s) 1245
BsiHKCI CYCGRG 2 cut(s) 338, 1294
BsiSI CCGG 2 cut(s) 62, 294
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 4 cut(s) 193, 245, 409, 807
BsmFI GGGAC 1 cut(s) 708
BsmI GAATGC 3 cut(s) 417, 613, 929
BsnI GGCC 7 cut(s) 70, 120, 265, 740, 1052, 1078, 1187
BsoBI CYCGRG 2 cut(s) 338, 1294
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 4 cut(s) 616, 673, 1043, 1054
BspACI CCGC 2 cut(s) 465, 689
BspANI GGCC 7 cut(s) 70, 120, 265, 740, 1052, 1078, 1187
BspCNI CTCAG 2 cut(s) 267, 683
BspLI GGNNCC 2 cut(s) 724, 1247
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 482, 931
BsrI ACTGG 4 cut(s) 526, 584, 1132, 1249
BssECI CCNNGG 3 cut(s) 403, 726, 1182
BssMI GATC 4 cut(s) 616, 673, 1043, 1054
BssNAI GTATAC 1 cut(s) 638
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 726, 1182
Bst1107I GTATAC 1 cut(s) 638
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 404, 516
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 1026
BstBAI YACGTR 2 cut(s) 881, 1124
BstC8I GCNNGC 3 cut(s) 207, 1164, 1258
BstDEI CTNAG 6 cut(s) 19, 122, 254, 392, 670, 1067
BstEII GGTNACC 1 cut(s) 448
BstENI CCTNNNNNAGG 2 cut(s) 191, 243
BstF5I GGATG 2 cut(s) 418, 797
BstHHI GCGC 3 cut(s) 489, 514, 891
BstKTI GATC 4 cut(s) 619, 676, 1046, 1057
BstMBI GATC 4 cut(s) 616, 673, 1043, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 414, 941
BstNI CCWGG 2 cut(s) 404, 516
BstNSI RCATGY 1 cut(s) 636
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 402, 514
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BstZ17I GTATAC 1 cut(s) 638
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 7 cut(s) 70, 120, 265, 740, 1052, 1078, 1187
BtsCI GGATG 2 cut(s) 418, 797
BtsIMutI CAGTG 3 cut(s) 591, 1053, 1256
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 3 cut(s) 207, 1164, 1258
CfoI GCGC 3 cut(s) 489, 514, 891
Cfr13I GGNCC 6 cut(s) 263, 523, 722, 738, 1063, 1175
Csp6I GTAC 2 cut(s) 1036, 1125
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 4 cut(s) 633, 742, 864, 1039
CviQI GTAC 2 cut(s) 1036, 1125
DdeI CTNAG 6 cut(s) 19, 122, 254, 392, 670, 1067
DpnI GATC 4 cut(s) 618, 675, 1045, 1056
DpnII GATC 4 cut(s) 616, 673, 1043, 1054
DraIII CACNNNGTG 1 cut(s) 504
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
Eco130I CCWWGG 2 cut(s) 726, 1182
Eco147I AGGCCT 2 cut(s) 120, 1187
Eco24I GRGCYC 1 cut(s) 410
Eco47I GGWCC 4 cut(s) 523, 722, 1063, 1175
Eco72I CACGTG 1 cut(s) 881
Eco81I CCTNAGG 1 cut(s) 122
Eco88I CYCGRG 2 cut(s) 338, 1294
Eco91I GGTNACC 1 cut(s) 448
EcoNI CCTNNNNNAGG 2 cut(s) 191, 243
EcoO109I RGGNCCY 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 402, 514
EcoT14I CCWWGG 2 cut(s) 726, 1182
EcoT22I ATGCAT 2 cut(s) 869, 931
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 2 cut(s) 726, 1182
FaeI CATG 4 cut(s) 636, 745, 867, 1042
FaqI GGGAC 1 cut(s) 708
FatI CATG 4 cut(s) 632, 741, 863, 1038
FblI GTMKAC 1 cut(s) 637
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 2 cut(s) 425, 784
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 2 cut(s) 830, 995
GlaI GCGC 3 cut(s) 488, 513, 890
GluI GCNGC 1 cut(s) 690
GsaI CCCAGC 2 cut(s) 46, 944
HaeIII GGCC 7 cut(s) 70, 120, 265, 740, 1052, 1078, 1187
HapII CCGG 2 cut(s) 62, 294
HhaI GCGC 3 cut(s) 489, 514, 891
Hin1II CATG 4 cut(s) 636, 745, 867, 1042
Hin6I GCGC 3 cut(s) 487, 512, 889
HinP1I GCGC 3 cut(s) 487, 512, 889
HincII GTYRAC 1 cut(s) 1144
HindII GTYRAC 1 cut(s) 1144
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 160
HpaII CCGG 2 cut(s) 62, 294
HphI GGTGA 2 cut(s) 460, 1015
Hpy166II GTNNAC 2 cut(s) 638, 1144
Hpy188I TCNGA 5 cut(s) 100, 132, 412, 673, 1114
Hpy188III TCNNGA 8 cut(s) 80, 338, 532, 604, 644, 842, 954, 1173
Hpy8I GTNNAC 2 cut(s) 638, 1144
HpyAV CCTTC 4 cut(s) 174, 254, 293, 1003
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 3 cut(s) 330, 880, 1123
HpyCH4V TGCA 9 cut(s) 291, 482, 569, 703, 827, 867, 878, 929, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 941
HpyF3I CTNAG 6 cut(s) 19, 122, 254, 392, 670, 1067
HpySE526I ACGT 3 cut(s) 330, 880, 1123
Hsp92II CATG 4 cut(s) 636, 745, 867, 1042
HspAI GCGC 3 cut(s) 487, 512, 889
Kzo9I GATC 4 cut(s) 616, 673, 1043, 1054
LmnI GCTCC 2 cut(s) 20, 592
LweI GCATC 6 cut(s) 81, 343, 452, 499, 676, 760
MaeI CTAG 2 cut(s) 830, 995
MaeII ACGT 3 cut(s) 330, 880, 1123
MaeIII GTNAC 3 cut(s) 331, 448, 914
MalI GATC 4 cut(s) 618, 675, 1045, 1056
MboI GATC 4 cut(s) 616, 673, 1043, 1054
MboII GAAGA 4 cut(s) 169, 746, 896, 1043
MfeI CAATTG 3 cut(s) 772, 822, 965
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 345, 627, 772, 822, 965
Mph1103I ATGCAT 2 cut(s) 869, 931
MseI TTAA 3 cut(s) 33, 837, 1014
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 2 cut(s) 62, 294
MspR9I CCNGG 2 cut(s) 404, 516
MunI CAATTG 3 cut(s) 772, 822, 965
Mva1269I GAATGC 3 cut(s) 417, 613, 929
MvaI CCWGG 2 cut(s) 404, 516
MwoI GCNNNNNNNGC 2 cut(s) 414, 941
NdeII GATC 4 cut(s) 616, 673, 1043, 1054
NlaIII CATG 4 cut(s) 636, 745, 867, 1042
NlaIV GGNNCC 2 cut(s) 724, 1247
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 869, 931
NspI RCATGY 1 cut(s) 636
PaeR7I CTCGAG 2 cut(s) 338, 1294
PceI AGGCCT 2 cut(s) 120, 1187
PciI ACATGT 1 cut(s) 632
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 3 cut(s) 417, 613, 929
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 691
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
Ppu21I YACGTR 2 cut(s) 881, 1124
PscI ACATGT 1 cut(s) 632
PsiI TTATAA 2 cut(s) 56, 794
Psp6I CCWGG 2 cut(s) 402, 514
PspCI CACGTG 1 cut(s) 881
PspEI GGTNACC 1 cut(s) 448
PspFI CCCAGC 2 cut(s) 42, 940
PspGI CCWGG 2 cut(s) 402, 514
PspN4I GGNNCC 2 cut(s) 724, 1247
PspPI GGNCC 6 cut(s) 263, 523, 722, 738, 1063, 1175
PspXI VCTCGAGB 1 cut(s) 1294
PsuI RGATCY 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 2 cut(s) 1037, 1126
RsaNI GTAC 2 cut(s) 1036, 1125
SaqAI TTAA 3 cut(s) 33, 837, 1014
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 4 cut(s) 616, 673, 1043, 1054
Sau96I GGNCC 6 cut(s) 263, 523, 722, 738, 1063, 1175
ScrFI CCNGG 2 cut(s) 404, 516
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 6 cut(s) 81, 343, 452, 499, 676, 760
Sfr274I CTCGAG 2 cut(s) 338, 1294
SinI GGWCC 4 cut(s) 523, 722, 1063, 1175
SlaI CTCGAG 2 cut(s) 338, 1294
SmlI CTYRAG 3 cut(s) 338, 555, 1294
SmoI CTYRAG 3 cut(s) 338, 555, 1294
Sse9I AATT 5 cut(s) 345, 627, 772, 822, 965
SseBI AGGCCT 2 cut(s) 120, 1187
SsiI CCGC 2 cut(s) 465, 689
SspMI CTAG 2 cut(s) 830, 995
StuI AGGCCT 2 cut(s) 120, 1187
StyD4I CCNGG 2 cut(s) 402, 514
StyI CCWWGG 2 cut(s) 726, 1182
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 3 cut(s) 333, 883, 1126
TaqI TCGA 6 cut(s) 37, 173, 339, 361, 786, 1295
TasI AATT 5 cut(s) 345, 627, 772, 822, 965
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 3 cut(s) 33, 837, 1014
Tru9I TTAA 3 cut(s) 33, 837, 1014
TscAI CASTG 3 cut(s) 591, 1053, 1256
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 8 cut(s) 463, 758, 852, 1022, 1035, 1040, 1044, 1093
TspGWI ACGGA 2 cut(s) 890, 1238
TspRI CASTG 3 cut(s) 591, 1053, 1256
VpaK11BI GGWCC 4 cut(s) 523, 722, 1063, 1175
XagI CCTNNNNNAGG 2 cut(s) 191, 243
XceI RCATGY 1 cut(s) 636
XhoI CTCGAG 2 cut(s) 338, 1294
XmiI GTMKAC 1 cut(s) 637
XspI CTAG 2 cut(s) 830, 995
Zsp2I ATGCAT 2 cut(s) 869, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.