Rh5DG467500

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007711
Physical Location & Seq
Forward (+)
74193542 .. 74194730
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG467500.1

Sequence Viewer

Length: 426 bp
ATGTCGGGCGGGTTTTTTAGGGTGGACATGAGGAAGGTGAATATGGATGTGCTCCGTCCATGGATTGCTAATAGGGTAACCGAGCTTCTTGGGTTCGAAGATGAAGTTCTTATCAACTTCATTTATGGTCTTTTGGATGTGAAGGAAGTGAATGGAAAGGAGATTCAAATTTCACTGACTGGATTTATGGAGAAAAATACGGTGAAGTTTATGAGAGAGCTTTGGACGCTTCTTCTCAGTGCGCAAAACAATGCCAGTGGTGTCCCTCAACAGTTCTTGGATGCCAAACAAGAGGAAGCACGAAAAAAGAAGGAGGAGGCAGATGCAATTGAAACTCAGAGGAAGAAAGATAAGGAGACGCTTGAACTAGAGAGATCGAAGACGATGGTAATAGCATTTTATTCATGCTGGAGTTGCATTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

141

Amino Acids

16.37

Weight (kDa)

5.66

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWI PF01480 16 - 85 2.5e-28 PWI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 243
AciI CCGC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 168
AgsI TTSAA 3 cut(s) 167, 332, 365
AluBI AGCT 2 cut(s) 85, 220
AluI AGCT 2 cut(s) 85, 220
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 49, 214
AsuII TTCGAA 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 368, 424
BmsI GCATC 2 cut(s) 271, 313
BpiI GAAGAC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 184, 255
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 3 cut(s) 52, 142, 286
BseMII CTCAG 2 cut(s) 250, 350
BseNI ACTGG 2 cut(s) 184, 255
BseRI GAGGAG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 2 cut(s) 249, 349
BspT104I TTCGAA 1 cut(s) 96
BsrI ACTGG 2 cut(s) 184, 255
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 202, 273
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 236, 336
BstDSI CCRYGG 1 cut(s) 59
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 3 cut(s) 52, 142, 286
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 2 cut(s) 226, 414
BstPI GGTNACC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 3 cut(s) 52, 142, 286
BtsIMutI CAGTG 3 cut(s) 173, 244, 262
CfoI GCGC 1 cut(s) 244
CseI GACGC 2 cut(s) 235, 367
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 3 cut(s) 28, 60, 405
CviJI RGCY 2 cut(s) 85, 220
CviKI_1 RGCY 2 cut(s) 85, 220
DdeI CTNAG 2 cut(s) 236, 336
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 31, 63, 408
FaiI YATR 7 cut(s) 29, 44, 61, 126, 188, 212, 406
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 27, 59, 404
FauI CCCGC 1 cut(s) 2
FokI GGATG 3 cut(s) 59, 149, 293
FspBI CTAG 2 cut(s) 368, 424
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 1 cut(s) 243
HgaI GACGC 2 cut(s) 235, 367
HhaI GCGC 1 cut(s) 244
Hin1II CATG 3 cut(s) 31, 63, 408
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 163
HphI GGTGA 2 cut(s) 49, 214
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 339
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 28, 136, 304
HpyCH4III ACNGT 2 cut(s) 202, 273
HpyCH4V TGCA 2 cut(s) 326, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 414
HpyF3I CTNAG 2 cut(s) 236, 336
Hsp92II CATG 3 cut(s) 31, 63, 408
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 165, 268, 394
LweI GCATC 2 cut(s) 271, 313
MaeI CTAG 2 cut(s) 368, 424
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 4 cut(s) 110, 224, 355, 391
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 168, 327
MnlI CCTC 6 cut(s) 24, 276, 286, 307, 310, 333
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 226, 414
NcoI CCATGG 1 cut(s) 59
NdeII GATC 1 cut(s) 374
NlaIII CATG 3 cut(s) 31, 63, 408
NsbI TGCGCA 1 cut(s) 243
NspV TTCGAA 1 cut(s) 96
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 39, 87, 222
SfaNI GCATC 2 cut(s) 271, 313
SfuI TTCGAA 1 cut(s) 96
Sse9I AATT 2 cut(s) 168, 327
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 368, 424
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 202, 273
TaqI TCGA 2 cut(s) 96, 377
TasI AATT 2 cut(s) 168, 327
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 3 cut(s) 180, 244, 262
TspDTI ATGAA 3 cut(s) 109, 117, 393
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 3 cut(s) 180, 244, 262
XapI RAATTY 1 cut(s) 168
XspI CTAG 2 cut(s) 368, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.