Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

79471707 .. 79473074

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTGGCGACATGGGAAGAAAGCGTGAAAAGCTCCATCAACACCATCTATCTCCTCTTCACTGCCTATCTTGTCTTCCTCATGCAGCTTGGCTTTGCCATGCTCTGCGCTGGCTTTGTTCGATCCAAGAATGCCACAAACATAATGCTCTCCAATGTAGTGGATGCCATTGTAGGTAGCCTCTCTTTCTATATCTTTGGATTCGCTTTTGCATTTGGAGAAGGCTCCAATTCCAACGCTTTCATTGCTGTTGCTGGCATAACAAGTGGTTCCATAGCTGAGAGAACCCAATTCAGTGCATACCTCATTTTCTCTTGTTTTCTGTCTGGGTTTGTGTACCCTGTGGTGGTTCACTGGGTTTGGTCATCGAGTGGTTGGCTCAATCCTAGTTCGGCTAGTTTCTTTCTGTTTGGTTCTGGTCCTATTGACCCTGCCGGGAGTGGTGCGGTTCATTTGGTCGCTGGGATTGCGGGGCTTTCGGGCTCTTTCATTGAAGGCCCAAGAGTGAGCCGGTTTAATGCGTTTTGGAAGCCCATACCAATCCGAGGCCATAACACTACCCTCGTGGTGCTCGGGACATTCCTTTTGTGGTTCGGATGGTTTGGGTTTAATCCGGGCTCGTTTAATAAGATTCTCGTGGCCTATCCAGACACCACTGATGAAGGGAATTGCACTGTAGTGGGCCGATCGGCAGTTGTGACTACGTTAGCCAGGTCAACTTCTAGAATCATAACCCTCTTCGACTGGCGGCTGAATATCTTGGCCCTCAAGCTTCAATTCGACGAACCGTTGGAGGCAACCCAATTACACAGTGGGTGTGGTGCTTGGGGTTTAGTATTTACAGGCTTGTTTGCAAAGGAGGAGTTTGTGGTGCAAGCCTATGCTTCGGGTGTGGTTGTGGTTGAGGCTTTGGTGATTGTATCATTTGTATGCTCGGTTAGCTTCACAATGGGTCTTATATTCTACACCCTTCACATGCTTAACGTTCTGAGGATCTCAGTTGGTGACCCAGCACCATCGCTTATCACTCTGGTTCTTCTAACACAAAAGTCCCAAGATATGTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

356

Amino Acids

38.5

Weight (kDa)

6.2

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	18 - 82	1.2e-14	Ammonium Transporter Family
Ammonium_transp	PF00909	83 - 246	3.7e-43	Ammonium Transporter Family
Ammonium_transp	PF00909	253 - 333	1.6e-09	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	446, 470, 748
AclI	AACGTT	1 cut(s)	984
AclWI	GGATC	2 cut(s)	117, 1001
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	346, 545
AgsI	TTSAA	2 cut(s)	494, 776
AjnI	CCWGG	1 cut(s)	710
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	5 cut(s)	33, 88, 278, 772, 942
AluI	AGCT	5 cut(s)	33, 88, 278, 772, 942
Alw21I	GWGCWC	1 cut(s)	573
AlwI	GGATC	2 cut(s)	117, 1001
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	5 cut(s)	496, 547, 639, 682, 762
ApeKI	GCWGC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	419, 497, 682, 763
AsuC2I	CCSGG	2 cut(s)	436, 615
AsuHPI	GGTGA	2 cut(s)	925, 1016
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	485, 620
BauI	CACGAG	2 cut(s)	563, 635
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	44, 53, 591, 1024
BciT130I	CCWGG	1 cut(s)	712
BcnI	CCSGG	2 cut(s)	436, 615
BfaI	CTAG	3 cut(s)	387, 396, 723
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	2 cut(s)	86, 749
BlsI	GCNGC	2 cut(s)	87, 750
Bme1390I	CCNGG	3 cut(s)	436, 615, 712
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	4 cut(s)	419, 497, 682, 763
BmiI	GGNNCC	2 cut(s)	226, 271
BmrFI	CCNGG	3 cut(s)	436, 615, 712
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	2 cut(s)	436, 615
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 545
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	359, 749
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	169, 602
BseLI	CCNNNNNNNGG	2 cut(s)	346, 545
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	270, 980, 1011
BseNI	ACTGG	2 cut(s)	359, 749
BseRI	GAGGAG	2 cut(s)	44, 875
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	2 cut(s)	461, 1009
Bsh1285I	CGRYCG	1 cut(s)	689
BshFI	GGCC	5 cut(s)	498, 549, 641, 684, 764
BsiEI	CGRYCG	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	435, 511, 614
BslFI	GGGAC	2 cut(s)	589, 1036
BslI	CCNNNNNNNGG	2 cut(s)	346, 545
BsmFI	GGGAC	2 cut(s)	589, 1036
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	498, 549, 641, 684, 764
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	485, 573, 620
Bsp143I	GATC	3 cut(s)	122, 686, 993
BspACI	CCGC	3 cut(s)	446, 470, 748
BspANI	GGCC	5 cut(s)	498, 549, 641, 684, 764
BspCNI	CTCAG	3 cut(s)	271, 981, 1010
BspLI	GGNNCC	2 cut(s)	226, 271
BspPI	GGATC	2 cut(s)	117, 1001
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	359, 749
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	3 cut(s)	122, 686, 993
BssSI	CACGAG	2 cut(s)	563, 635
Bst2BI	CACGAG	2 cut(s)	563, 635
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	3 cut(s)	676, 789, 812
Bst6I	CTCTTC	2 cut(s)	62, 743
BstC8I	GCNNGC	3 cut(s)	112, 256, 876
BstDEI	CTNAG	3 cut(s)	279, 989, 997
BstEII	GGTNACC	1 cut(s)	1004
BstF5I	GGATG	2 cut(s)	169, 602
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	125, 689, 996
BstMBI	GATC	3 cut(s)	122, 686, 993
BstMCI	CGRYCG	1 cut(s)	689
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 245, 467, 939
BstNI	CCWGG	1 cut(s)	712
BstNSI	RCATGY	1 cut(s)	979
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	3 cut(s)	434, 613, 710
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	993
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	993
BsuRI	GGCC	5 cut(s)	498, 549, 641, 684, 764
BtgZI	GCGATG	1 cut(s)	1002
BtsCI	GGATG	2 cut(s)	169, 602
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	6 cut(s)	60, 301, 352, 654, 672, 817
Cac8I	GCNNGC	3 cut(s)	112, 256, 876
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	4 cut(s)	419, 497, 682, 763
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	4 cut(s)	12, 82, 100, 976
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	279, 989, 997
DpnI	GATC	3 cut(s)	124, 688, 995
DpnII	GATC	3 cut(s)	122, 686, 993
Eam1104I	CTCTTC	2 cut(s)	62, 743
EarI	CTCTTC	2 cut(s)	62, 743
Eco24I	GRGCYC	2 cut(s)	485, 620
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	572
Eco91I	GGTNACC	1 cut(s)	1004
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	710
EcoT38I	GRGCYC	2 cut(s)	485, 620
FaeI	CATG	4 cut(s)	15, 85, 103, 979
FaqI	GGGAC	2 cut(s)	589, 1036
FatI	CATG	4 cut(s)	11, 81, 99, 975
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	86, 749
FokI	GGATG	2 cut(s)	176, 609
FriOI	GRGCYC	2 cut(s)	485, 620
Fsp4HI	GCNGC	2 cut(s)	86, 749
FspBI	CTAG	3 cut(s)	387, 396, 723
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	86, 749
GsaI	CCCAGC	2 cut(s)	465, 1013
HaeIII	GGCC	5 cut(s)	498, 549, 641, 684, 764
HapII	CCGG	3 cut(s)	435, 511, 614
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	15, 85, 103, 979
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	3 cut(s)	201, 631, 726
HpaII	CCGG	3 cut(s)	435, 511, 614
HphI	GGTGA	2 cut(s)	925, 1016
Hpy166II	GTNNAC	3 cut(s)	337, 352, 717
Hpy188I	TCNGA	3 cut(s)	545, 596, 990
Hpy188III	TCNNGA	3 cut(s)	574, 647, 723
Hpy8I	GTNNAC	3 cut(s)	337, 352, 717
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	4 cut(s)	215, 488, 656, 980
HpyCH4III	ACNGT	3 cut(s)	676, 789, 812
HpyCH4IV	ACGT	2 cut(s)	704, 984
HpyCH4V	TGCA	6 cut(s)	85, 212, 299, 672, 854, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 245, 467, 939
HpyF3I	CTNAG	3 cut(s)	279, 989, 997
HpySE526I	ACGT	2 cut(s)	704, 984
Hsp92II	CATG	4 cut(s)	15, 85, 103, 979
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	122, 686, 993
LmnI	GCTCC	2 cut(s)	38, 230
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	3 cut(s)	387, 396, 723
MaeII	ACGT	2 cut(s)	704, 984
MaeIII	GTNAC	2 cut(s)	697, 1004
MalI	GATC	3 cut(s)	124, 688, 995
MboI	GATC	3 cut(s)	122, 686, 993
MboII	GAAGA	5 cut(s)	29, 49, 67, 730, 1028
MflI	RGATCY	1 cut(s)	993
MhlI	GDGCHC	3 cut(s)	485, 573, 620
MluCI	AATT	6 cut(s)	229, 290, 667, 776, 803, 1065
MmeI	TCCRAC	2 cut(s)	258, 771
MseI	TTAA	4 cut(s)	516, 609, 624, 981
MslI	CAYNNNNRTG	2 cut(s)	677, 928
MspI	CCGG	3 cut(s)	435, 511, 614
MspR9I	CCNGG	3 cut(s)	436, 615, 712
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	712
MwoI	GCNNNNNNNGC	4 cut(s)	30, 245, 467, 939
NciI	CCSGG	2 cut(s)	436, 615
NdeII	GATC	3 cut(s)	122, 686, 993
NlaIII	CATG	4 cut(s)	15, 85, 103, 979
NlaIV	GGNNCC	2 cut(s)	226, 271
NmuCI	GTSAC	2 cut(s)	697, 1004
NspI	RCATGY	1 cut(s)	979
OliI	CACNNNNGTG	1 cut(s)	677
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	201, 631, 726
PkrI	GCNGC	2 cut(s)	87, 750
Ple19I	CGATCG	1 cut(s)	689
Psp1406I	AACGTT	1 cut(s)	984
Psp6I	CCWGG	1 cut(s)	710
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	2 cut(s)	461, 1009
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	226, 271
PspPI	GGNCC	4 cut(s)	419, 497, 682, 763
PsuI	RGATCY	1 cut(s)	993
PvuI	CGATCG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	677, 928
SaqAI	TTAA	4 cut(s)	516, 609, 624, 981
SatI	GCNGC	2 cut(s)	86, 749
Sau3AI	GATC	3 cut(s)	122, 686, 993
Sau96I	GGNCC	4 cut(s)	419, 497, 682, 763
ScrFI	CCNGG	3 cut(s)	436, 615, 712
SduI	GDGCHC	3 cut(s)	485, 573, 620
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	677, 928
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	229, 290, 667, 776, 803, 1065
SsiI	CCGC	3 cut(s)	446, 470, 748
SspMI	CTAG	3 cut(s)	387, 396, 723
StyD4I	CCNGG	3 cut(s)	434, 613, 710
TaaI	ACNGT	3 cut(s)	676, 789, 812
TaiI	ACGT	2 cut(s)	707, 987
TaqI	TCGA	4 cut(s)	121, 368, 741, 780
TasI	AATT	6 cut(s)	229, 290, 667, 776, 803, 1065
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	201, 631, 726
Tru1I	TTAA	4 cut(s)	516, 609, 624, 981
Tru9I	TTAA	4 cut(s)	516, 609, 624, 981
TscAI	CASTG	6 cut(s)	67, 301, 359, 661, 679, 817
TseFI	GTSAC	2 cut(s)	697, 1004
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	2 cut(s)	697, 1004
TspDTI	ATGAA	4 cut(s)	232, 440, 478, 675
TspRI	CASTG	6 cut(s)	67, 301, 359, 661, 679, 817
VpaK11BI	GGWCC	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	722
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XspI	CTAG	3 cut(s)	387, 396, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.