Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

80006582 .. 80007374

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG513600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGCTCGGCTTTGCCATGCTCTGCGCTGGCTCTGTTCGATCCAAGAATGCCACAAACATAATGCTCTCCAATGTAGTGGATGCCATTGTAGGTAGCCTCTCTTTCTATATCTTTGGATTCGCTTTTGCATTTGGAGAAGGCTCCAATTCCAACGCTTTCATTGGTACCAATTTCTTTGCTCTCAAAGACATTCCCAGTAGCTCATCTTATGACTACAGCTTCTTCCTTTTCCAATGGGCATTTGCTATAGCTGTTGCTGGCATAACAAGTGGTTCCATAGCTGAGAGAACCCAATTCAGTGCATACCTCATTTTCTCTTGTTTTCTGTCTGGGTTTGTGTACCCTGTGGTGGCTCACTGGGTTTGGTCATCAAGTGGTTGGCTCAATCCTAGTTCGGCTAGTTTCTTGCTGTTTGGTTCTGGTGCTATTGACTTTGCCGGGAGTGGTGTGGTTCATTTGGTCGGTGGGATTGCCGGGCTTTGGGGCTCTTTCATTGAAGGCCCAAGAGTGGGCCGGTTTAATGCGTTTGGGAAGCCCATACCAATCCGAGGCCATAACACTACCCTCGTGGTGCTCGAACCCCTGTTGTGGTTCGGATGGTTTGGGTTTAATCCGGGCTGGTTCAATAAGATTCTCGTGGCCTATCCAGACACCACTGATGAAGGGAATTGGACTGCAGTGGGCCGATCGGCAGTTGTGACTACGTTAGCCGGGTCAACTTCTGGAATCTACCCCTCTACGGCCGGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

251

Amino Acids

26.71

Weight (kDa)

6.25

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	1 - 244	1e-66	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	1 cut(s)	750
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	744
AfaI	GTAC	2 cut(s)	169, 344
AfiI	CCNNNNNNNGG	7 cut(s)	352, 483, 511, 512, 551, 591, 742
AgsI	TTSAA	2 cut(s)	500, 628
AluBI	AGCT	5 cut(s)	7, 204, 222, 254, 284
AluI	AGCT	5 cut(s)	7, 204, 222, 254, 284
Alw21I	GWGCWC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	6 cut(s)	502, 514, 553, 642, 685, 744
ApeKI	GCWGC	1 cut(s)	4
Asp718I	GGTACC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	503, 514, 685
AsuC2I	CCSGG	4 cut(s)	442, 478, 618, 715
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	491
BauI	CACGAG	2 cut(s)	569, 638
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	594
BcnI	CCSGG	4 cut(s)	442, 478, 618, 715
BfaI	CTAG	2 cut(s)	393, 402
BfmI	CTRYAG	3 cut(s)	217, 249, 678
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	442, 478, 618, 715
BmgT120I	GGNCC	3 cut(s)	503, 514, 685
BmiI	GGNNCC	3 cut(s)	145, 169, 277
BmrFI	CCNGG	4 cut(s)	442, 478, 618, 715
BmrI	ACTGGG	2 cut(s)	192, 370
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	2 cut(s)	192, 370
BpuMI	CCSGG	4 cut(s)	442, 478, 618, 715
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	7 cut(s)	352, 483, 511, 512, 551, 591, 742
Bse118I	RCCGGY	2 cut(s)	516, 746
Bse1I	ACTGG	2 cut(s)	198, 365
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	2 cut(s)	88, 605
BseLI	CCNNNNNNNGG	7 cut(s)	352, 483, 511, 512, 551, 591, 742
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	198, 365
BseX3I	CGGCCG	1 cut(s)	744
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	2 cut(s)	692, 747
BshFI	GGCC	6 cut(s)	504, 516, 555, 644, 687, 746
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	692, 747
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	6 cut(s)	441, 477, 517, 617, 714, 747
BslI	CCNNNNNNNGG	7 cut(s)	352, 483, 511, 512, 551, 591, 742
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	6 cut(s)	504, 516, 555, 644, 687, 746
Bsp1286I	GDGCHC	2 cut(s)	491, 579
Bsp143I	GATC	2 cut(s)	41, 689
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	6 cut(s)	504, 516, 555, 644, 687, 746
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	145, 169, 277
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	516, 746
BsrI	ACTGG	2 cut(s)	198, 365
BssAI	RCCGGY	2 cut(s)	516, 746
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	2 cut(s)	41, 689
BssSI	CACGAG	2 cut(s)	569, 638
Bst2BI	CACGAG	2 cut(s)	569, 638
BstC8I	GCNNGC	3 cut(s)	31, 262, 748
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	88, 605
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	44, 692
BstMBI	GATC	2 cut(s)	41, 689
BstMCI	CGRYCG	2 cut(s)	692, 747
BstSCI	CCNGG	4 cut(s)	440, 476, 616, 713
BstSFI	CTRYAG	3 cut(s)	217, 249, 678
BstV1I	GCAGC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	744
BsuRI	GGCC	6 cut(s)	504, 516, 555, 644, 687, 746
BtsCI	GGATG	2 cut(s)	88, 605
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	4 cut(s)	307, 358, 657, 687
Cac8I	GCNNGC	3 cut(s)	31, 262, 748
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	2 cut(s)	516, 746
Cfr13I	GGNCC	3 cut(s)	503, 514, 685
Csp6I	GTAC	2 cut(s)	168, 343
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	2 cut(s)	168, 343
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	43, 691
DpnII	GATC	2 cut(s)	41, 689
EaeI	YGGCCR	1 cut(s)	744
EagI	CGGCCG	1 cut(s)	744
EclXI	CGGCCG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	491
Eco52I	CGGCCG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	491
FaeI	CATG	1 cut(s)	22
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	95, 612
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	393, 402
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	6 cut(s)	504, 516, 555, 644, 687, 746
HapII	CCGG	6 cut(s)	441, 477, 517, 617, 714, 747
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	3 cut(s)	120, 634, 729
HpaII	CCGG	6 cut(s)	441, 477, 517, 617, 714, 747
Hpy166II	GTNNAC	2 cut(s)	343, 720
Hpy188I	TCNGA	2 cut(s)	551, 599
Hpy188III	TCNNGA	2 cut(s)	650, 726
Hpy8I	GTNNAC	2 cut(s)	343, 720
HpyAV	CCTTC	3 cut(s)	134, 494, 659
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	4 cut(s)	4, 131, 305, 680
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	746
KroNI	GCCGGC	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	41, 689
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	393, 402
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	2 cut(s)	43, 691
MboI	GATC	2 cut(s)	41, 689
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	491, 579
MluCI	AATT	4 cut(s)	148, 172, 296, 670
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	110, 320, 545, 578, 748
MroNI	GCCGGC	1 cut(s)	746
MseI	TTAA	3 cut(s)	522, 612, 754
MspI	CCGG	6 cut(s)	441, 477, 517, 617, 714, 747
MspR9I	CCNGG	4 cut(s)	442, 478, 618, 715
Mva1269I	GAATGC	1 cut(s)	55
NaeI	GCCGGC	1 cut(s)	748
NciI	CCSGG	4 cut(s)	442, 478, 618, 715
NdeII	GATC	2 cut(s)	41, 689
NgoMIV	GCCGGC	1 cut(s)	746
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	3 cut(s)	145, 169, 277
NmuCI	GTSAC	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PctI	GAATGC	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	748
PfeI	GAWTC	3 cut(s)	120, 634, 729
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	145, 169, 277
PspPI	GGNCC	3 cut(s)	503, 514, 685
PstI	CTGCAG	1 cut(s)	682
PvuI	CGATCG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	169, 344
RsaNI	GTAC	2 cut(s)	168, 343
SaqAI	TTAA	3 cut(s)	522, 612, 754
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	41, 689
Sau96I	GGNCC	3 cut(s)	503, 514, 685
ScrFI	CCNGG	4 cut(s)	442, 478, 618, 715
SduI	GDGCHC	2 cut(s)	491, 579
SetI	ASST	8 cut(s)	9, 97, 206, 224, 256, 286, 312, 710
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	3 cut(s)	217, 249, 678
Sse9I	AATT	4 cut(s)	148, 172, 296, 670
SsiI	CCGC	1 cut(s)	750
SspMI	CTAG	2 cut(s)	393, 402
StyD4I	CCNGG	4 cut(s)	440, 476, 616, 713
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	2 cut(s)	40, 579
TasI	AATT	4 cut(s)	148, 172, 296, 670
TfiI	GAWTC	3 cut(s)	120, 634, 729
Tru1I	TTAA	3 cut(s)	522, 612, 754
Tru9I	TTAA	3 cut(s)	522, 612, 754
TscAI	CASTG	4 cut(s)	307, 365, 664, 687
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	4 cut(s)	151, 446, 484, 678
TspRI	CASTG	4 cut(s)	307, 365, 664, 687
XspI	CTAG	2 cut(s)	393, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.