Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

78322911 .. 78325376

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGTGGCGACATGGGAAGAAAGCGTGACAAGCTCCATCAACACCATCTATCTCCTCTTGTCTGCCTATCTTGTCTTCCTCATGCAGCTCGGCTTTGCCATGCTCTGCGCTGGCTCTGTTCTATCCAAGAATGCCACAAACATAATGCTCTCCAATGTAGTGGATGCCATTGTAGGTAGCCTCTCTTTCTGTATCTTTGGATTCGCTTTTGCATTTGGAGAAGGCTCCAATTCCAACGCTTTCATTGGTACTAATTTCTTTGCTCTCAATGACATTCCCAGTAGCTCATCTTATGACTACAACTTCTTCATTTTCCAATGGGCATTTGCTATATCTGTTGCTGGCATAACAAGTGGTTCCATAGCTGAGAGAACCCAATTCAGTGCATACCTCATTTTCTCTTGTTTTCTGTCTGGGTTTGTGTACGCTGTGGTGGCTCACTGGGTTTGGTCATCAAGTGGTTGGCTCAATCCTAGTTTTGCTAATTTCTTGCTATTTGGTTCTGGTGCTATTGACTTTGCGGGAGTGGTGCCACAAAACTACCCTCGGGTGCTCGGGACATTCCTGTTGTGGTTCGGATGGCTTAGGTTTAATCCGGGGTCGTTCGATAAGATTCTCGTGGCTTATCCAGACACCATTGATGAAGCGAATTGGACTGTAGTGGCTAGGGGGGATCGGACCCCTTTGGGCCGAACAGTAGTTCCGCCCCTAGATGCACTCGATGTTTGCAATGGAGTGCTTGGTGGGTTTGTTGCAATAACTTCCGGATGTGCGGTGGTTGAGCCATGCGCCGCAGTTGTTTGTGGATTTTTCGCCGCTTGGGTCTTAATTGGGATGAATATCTTGGCCCTCAAACTTCAATTTGACGACCTTTTAGAGGCGGCCCAATTACACGGTTGGTGTGGTGCTTGGGGTTTGATAGTTACAGGCTTGTTTGCAAAGGAGGAGTTTGTGGTTCAAGCCTATGATTCGGGTGTGGTTGGTACACAGCTTGGCCTTATGGCTTTGGTGATTTTATGCTGGGTTATCTTGACAATGGGTCCTCTATTCTACACCCTTCACAAGCTTAACGTTCTGAGGATCTCAGTTGATGAAGAAATTGCAGGTCTTGATGTCTGTAGCCATGGAGGCCATGTACATGTTAATACAGACGAGATTCAGCCTCCCTTTTATGCAGAATATCTGCCTATGCGAGAAGATGGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

402

Amino Acids

43.6

Weight (kDa)

4.44

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	18 - 175	6e-40	Ammonium Transporter Family
Ammonium_transp	PF00909	184 - 377	2.8e-43	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1094
AccB1I	GGYRCC	1 cut(s)	529
AccIII	TCCGGA	1 cut(s)	764
AciI	CCGC	6 cut(s)	521, 704, 773, 792, 816, 881
AclI	AACGTT	1 cut(s)	1071
AclWI	GGATC	2 cut(s)	681, 1088
AfaI	GTAC	4 cut(s)	250, 425, 985, 1137
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	1138
AgsI	TTSAA	2 cut(s)	860, 959
AhdI	GACNNNNNGTC	1 cut(s)	1038
AloI	GAACNNNNNNTCC	2 cut(s)	685, 717
AluBI	AGCT	6 cut(s)	33, 88, 285, 365, 991, 1066
AluI	AGCT	6 cut(s)	33, 88, 285, 365, 991, 1066
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	681, 1088
Ama87I	CYCGRG	2 cut(s)	546, 554
Aor13HI	TCCGGA	1 cut(s)	764
AoxI	GGCC	5 cut(s)	688, 846, 882, 994, 1129
ApeKI	GCWGC	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	110, 791
AspS9I	GGNCC	5 cut(s)	678, 688, 847, 883, 1040
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	1021
AvaI	CYCGRG	2 cut(s)	546, 554
AvaII	GGWCC	2 cut(s)	678, 1040
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	44, 53, 573, 1193
BcnI	CCSGG	1 cut(s)	597
BfaI	CTAG	3 cut(s)	474, 666, 710
BfmI	CTRYAG	2 cut(s)	657, 1117
BfuAI	ACCTGC	1 cut(s)	1094
BglI	GCCNNNNNGGC	1 cut(s)	1128
BisI	GCNGC	4 cut(s)	86, 792, 816, 882
BlsI	GCNGC	4 cut(s)	87, 793, 817, 883
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	2 cut(s)	678, 1040
BmeRI	GACNNNNNGTC	1 cut(s)	1038
BmeT110I	CYCGRG	2 cut(s)	546, 554
BmgT120I	GGNCC	5 cut(s)	678, 688, 847, 883, 1040
BmiI	GGNNCC	5 cut(s)	226, 358, 531, 680, 1041
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	2 cut(s)	273, 451
BmsI	GCATC	2 cut(s)	154, 703
BmuI	ACTGGG	2 cut(s)	273, 451
BpiI	GAAGAC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	3 cut(s)	545, 596, 1123
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	1119, 1149
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse1I	ACTGG	2 cut(s)	279, 446
Bse3DI	GCAATG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	839
BseAI	TCCGGA	1 cut(s)	764
BseDI	CCNNGG	3 cut(s)	545, 596, 1123
BseGI	GGATG	4 cut(s)	169, 584, 773, 840
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	357, 1067, 1098
BseNI	ACTGG	2 cut(s)	279, 446
BseRI	GAGGAG	2 cut(s)	44, 959
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	1020
BshFI	GGCC	5 cut(s)	690, 848, 884, 996, 1131
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	2 cut(s)	546, 554
BsiSI	CCGG	2 cut(s)	596, 765
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	690, 848, 884, 996, 1131
BsoBI	CYCGRG	2 cut(s)	546, 554
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	764
Bsp1407I	TGTACA	1 cut(s)	1135
Bsp143I	GATC	2 cut(s)	673, 1080
Bsp19I	CCATGG	1 cut(s)	1123
BspACI	CCGC	6 cut(s)	521, 704, 773, 792, 816, 881
BspANI	GGCC	5 cut(s)	690, 848, 884, 996, 1131
BspCNI	CTCAG	3 cut(s)	358, 1068, 1097
BspEI	TCCGGA	1 cut(s)	764
BspHI	TCATGA	1 cut(s)	1205
BspLI	GGNNCC	5 cut(s)	226, 358, 531, 680, 1041
BspMI	ACCTGC	1 cut(s)	1094
BspPI	GGATC	2 cut(s)	681, 1088
BspT107I	GGYRCC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	1135
BsrI	ACTGG	2 cut(s)	279, 446
BssECI	CCNNGG	3 cut(s)	545, 596, 1123
BssMI	GATC	2 cut(s)	673, 1080
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	1123
Bst2BI	CACGAG	1 cut(s)	617
Bst4CI	ACNGT	3 cut(s)	658, 697, 896
BstAUI	TGTACA	1 cut(s)	1135
BstC8I	GCNNGC	2 cut(s)	112, 343
BstDEI	CTNAG	4 cut(s)	366, 584, 1076, 1084
BstDSI	CCRYGG	1 cut(s)	1123
BstENI	CCTNNNNNAGG	1 cut(s)	875
BstF5I	GGATG	4 cut(s)	169, 584, 773, 840
BstHHI	GCGC	2 cut(s)	110, 791
BstKTI	GATC	2 cut(s)	676, 1083
BstMBI	GATC	2 cut(s)	673, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 434, 1128
BstNSI	RCATGY	1 cut(s)	1142
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	657, 1117
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	1080
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	1080
BsuRI	GGCC	5 cut(s)	690, 848, 884, 996, 1131
BtgI	CCRYGG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	169, 584, 773, 840
BtsIMutI	CAGTG	2 cut(s)	388, 439
BveI	ACCTGC	1 cut(s)	1094
Cac8I	GCNNGC	2 cut(s)	112, 343
CciI	TCATGA	1 cut(s)	1205
CfoI	GCGC	2 cut(s)	110, 791
Cfr13I	GGNCC	5 cut(s)	678, 688, 847, 883, 1040
Csp6I	GTAC	4 cut(s)	249, 424, 984, 1136
CviAII	CATG	8 cut(s)	12, 82, 100, 786, 1124, 1133, 1139, 1206
CviQI	GTAC	4 cut(s)	249, 424, 984, 1136
DdeI	CTNAG	4 cut(s)	366, 584, 1076, 1084
DpnI	GATC	2 cut(s)	675, 1082
DpnII	GATC	2 cut(s)	673, 1080
DriI	GACNNNNNGTC	1 cut(s)	1038
Eam1105I	GACNNNNNGTC	1 cut(s)	1038
EciI	GGCGGA	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	1123
Eco47I	GGWCC	2 cut(s)	678, 1040
Eco88I	CYCGRG	2 cut(s)	546, 554
EcoNI	CCTNNNNNAGG	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoT14I	CCWWGG	1 cut(s)	1123
ErhI	CCWWGG	1 cut(s)	1123
FaeI	CATG	8 cut(s)	15, 85, 103, 789, 1127, 1136, 1142, 1209
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	8 cut(s)	11, 81, 99, 785, 1123, 1132, 1138, 1205
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	86, 792, 816, 882
FokI	GGATG	4 cut(s)	176, 591, 780, 847
Fsp4HI	GCNGC	4 cut(s)	86, 792, 816, 882
FspBI	CTAG	3 cut(s)	474, 666, 710
GlaI	GCGC	2 cut(s)	109, 790
GluI	GCNGC	4 cut(s)	86, 792, 816, 882
GsaI	CCCAGC	1 cut(s)	1024
HaeIII	GGCC	5 cut(s)	690, 848, 884, 996, 1131
HapII	CCGG	2 cut(s)	596, 765
HhaI	GCGC	2 cut(s)	110, 791
Hin1II	CATG	8 cut(s)	15, 85, 103, 789, 1127, 1136, 1142, 1209
Hin6I	GCGC	2 cut(s)	108, 789
HinP1I	GCGC	2 cut(s)	108, 789
HindIII	AAGCTT	1 cut(s)	1064
HinfI	GANTC	4 cut(s)	201, 613, 968, 1156
HpaII	CCGG	2 cut(s)	596, 765
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	2 cut(s)	424, 986
Hpy188I	TCNGA	3 cut(s)	578, 678, 1077
Hpy188III	TCNNGA	6 cut(s)	556, 629, 765, 1030, 1109, 1206
Hpy8I	GTNNAC	2 cut(s)	424, 986
HpyAV	CCTTC	2 cut(s)	215, 1067
HpyCH4III	ACNGT	3 cut(s)	658, 697, 896
HpyCH4IV	ACGT	1 cut(s)	1071
HpyCH4V	TGCA	9 cut(s)	85, 212, 386, 716, 729, 755, 938, 1103, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 434, 1128
HpyF3I	CTNAG	4 cut(s)	366, 584, 1076, 1084
HpySE526I	ACGT	1 cut(s)	1071
Hsp92II	CATG	8 cut(s)	15, 85, 103, 789, 1127, 1136, 1142, 1209
HspAI	GCGC	2 cut(s)	108, 789
Kpn2I	TCCGGA	1 cut(s)	764
Kzo9I	GATC	2 cut(s)	673, 1080
LmnI	GCTCC	2 cut(s)	38, 230
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	154, 703
MaeI	CTAG	3 cut(s)	474, 666, 710
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	2 cut(s)	25, 922
MalI	GATC	2 cut(s)	675, 1082
MboI	GATC	2 cut(s)	673, 1080
MboII	GAAGA	5 cut(s)	29, 67, 298, 1106, 1208
MflI	RGATCY	1 cut(s)	1080
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	9 cut(s)	229, 253, 377, 484, 649, 828, 860, 887, 1098
MmeI	TCCRAC	1 cut(s)	258
MroI	TCCGGA	1 cut(s)	764
MseI	TTAA	4 cut(s)	591, 827, 1068, 1143
MslI	CAYNNNNRTG	1 cut(s)	1137
MspI	CCGG	2 cut(s)	596, 765
MspR9I	CCNGG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	30, 434, 1128
NciI	CCSGG	1 cut(s)	597
NcoI	CCATGG	1 cut(s)	1123
NdeII	GATC	2 cut(s)	673, 1080
NlaIII	CATG	8 cut(s)	15, 85, 103, 789, 1127, 1136, 1142, 1209
NlaIV	GGNNCC	5 cut(s)	226, 358, 531, 680, 1041
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	1142
PagI	TCATGA	1 cut(s)	1205
PciI	ACATGT	1 cut(s)	1138
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	201, 613, 968, 1156
PkrI	GCNGC	4 cut(s)	87, 793, 817, 883
PpuMI	RGGWCCY	1 cut(s)	1040
PscI	ACATGT	1 cut(s)	1138
Psp1406I	AACGTT	1 cut(s)	1071
Psp5II	RGGWCCY	1 cut(s)	1040
PspFI	CCCAGC	1 cut(s)	1020
PspN4I	GGNNCC	5 cut(s)	226, 358, 531, 680, 1041
PspPI	GGNCC	5 cut(s)	678, 688, 847, 883, 1040
PspPPI	RGGWCCY	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	1080
RsaI	GTAC	4 cut(s)	250, 425, 985, 1137
RsaNI	GTAC	4 cut(s)	249, 424, 984, 1136
RseI	CAYNNNNRTG	1 cut(s)	1137
SaqAI	TTAA	4 cut(s)	591, 827, 1068, 1143
SatI	GCNGC	4 cut(s)	86, 792, 816, 882
Sau3AI	GATC	2 cut(s)	673, 1080
Sau96I	GGNCC	5 cut(s)	678, 688, 847, 883, 1040
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	154, 703
SfcI	CTRYAG	2 cut(s)	657, 1117
SinI	GGWCC	2 cut(s)	678, 1040
SmiMI	CAYNNNNRTG	1 cut(s)	1137
Sse9I	AATT	9 cut(s)	229, 253, 377, 484, 649, 828, 860, 887, 1098
SsiI	CCGC	6 cut(s)	521, 704, 773, 792, 816, 881
SspMI	CTAG	3 cut(s)	474, 666, 710
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	1 cut(s)	1123
TaaI	ACNGT	3 cut(s)	658, 697, 896
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	2 cut(s)	606, 720
TasI	AATT	9 cut(s)	229, 253, 377, 484, 649, 828, 860, 887, 1098
TatI	WGTACW	1 cut(s)	1135
TauI	GCSGC	3 cut(s)	794, 818, 884
TfiI	GAWTC	4 cut(s)	201, 613, 968, 1156
Tru1I	TTAA	4 cut(s)	591, 827, 1068, 1143
Tru9I	TTAA	4 cut(s)	591, 827, 1068, 1143
TscAI	CASTG	2 cut(s)	388, 446
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	5 cut(s)	232, 298, 657, 851, 1107
TspRI	CASTG	2 cut(s)	388, 446
VpaK11BI	GGWCC	2 cut(s)	678, 1040
XagI	CCTNNNNNAGG	1 cut(s)	875
XceI	RCATGY	1 cut(s)	1142
XspI	CTAG	3 cut(s)	474, 666, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.