Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

82444218 .. 82445088

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG480500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGGCGACATGGGAAGAAAGCGTGACAAGCTCCATCAACACCATCTATCTCCTCTTCTCTGCCTATCTTGTCTTCCTCATGCAGCTCGGCTTTGCCATGCTCTGTGCTGGCTCTGTTCTATCCAAGAATGCCACAAACATAATGCTCTCCAATGTAGTGGATGCCATTCCTATAGCTGTTGTTGGCATAACAAGTGGTTCTATAGCTGAGAGAACCCAATTCAGTGCATACCTCATTTTCTCTTGTTTTCTGTCTGGGTTTGTGTACCCTACGGAGGTTCACTGGGTTTGGTCATCGAGTGGTTGGCTCAATCCTAGTTCGGCTAGTTTCTTGCTGTCTGGATCTGGTGATATTGACCTTGCGGGGAATGGTGTGGTTCATTGGGTCGGTGAGATTGCCGGGCTTTGGGGCTCTTTCATTAAAGGCCCAAGAGTGGGTAGGTTTAATGCGTTTTGGAAGCCCATACCAATCCGAGGCCATAACACTACCCTCGTGGTGCTCGGGACATTCCTATTGTGGTTCGGATGGTTTTGGTTTAATCCGGGCTCGTTCGATAAGATTCTCGTGGCCTATCCTGACACCACTGATGAAGGAAATTGCACTGTAGTGGGCCGATCGGCTGTTGTGAATCAACTTCTGGAATCAGAAGTTCATAACCCTCTTCGGCCGGCAGTTACTAGTACGTGGGCCATTGGGATGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

235

Amino Acids

25.62

Weight (kDa)

5.65

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	18 - 57	1.4e-06	Ammonium Transporter Family
Ammonium_transp	PF00909	62 - 188	8.6e-38	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	668
AfaI	GTAC	2 cut(s)	269, 685
AfiI	CCNNNNNNNGG	5 cut(s)	277, 408, 436, 437, 476
AhlI	ACTAGT	1 cut(s)	680
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	4 cut(s)	33, 88, 179, 209
AluI	AGCT	4 cut(s)	33, 88, 179, 209
Alw21I	GWGCWC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	6 cut(s)	427, 478, 570, 613, 668, 690
ApeKI	GCWGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	428, 613, 690
AsuC2I	CCSGG	2 cut(s)	403, 546
AsuHPI	GGTGA	2 cut(s)	362, 404
AvaI	CYCGRG	1 cut(s)	503
BanII	GRGCYC	2 cut(s)	416, 551
BauI	CACGAG	2 cut(s)	494, 566
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	44, 53, 522
BcnI	CCSGG	2 cut(s)	403, 546
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	4 cut(s)	318, 327, 681, 706
BfmI	CTRYAG	3 cut(s)	174, 204, 606
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	403, 546
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	428, 613, 690
BmrFI	CCNGG	2 cut(s)	403, 546
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	154, 690
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	403, 546
BsaAI	YACGTR	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 408, 436, 437, 476
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	3 cut(s)	169, 533, 705
BseLI	CCNNNNNNNGG	5 cut(s)	277, 408, 436, 437, 476
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	44
BseX3I	CGGCCG	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	97
Bsh1285I	CGRYCG	2 cut(s)	620, 671
BshFI	GGCC	6 cut(s)	429, 480, 572, 615, 670, 692
BsiEI	CGRYCG	2 cut(s)	620, 671
BsiHKAI	GWGCWC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	3 cut(s)	402, 545, 671
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	5 cut(s)	277, 408, 436, 437, 476
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	6 cut(s)	429, 480, 572, 615, 670, 692
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	416, 504, 551
Bsp143I	GATC	2 cut(s)	344, 617
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	6 cut(s)	429, 480, 572, 615, 670, 692
BspCNI	CTCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	344, 617
BssSI	CACGAG	2 cut(s)	494, 566
Bst2BI	CACGAG	2 cut(s)	494, 566
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	62, 669
BstBAI	YACGTR	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	112, 672
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	169, 533, 705
BstKTI	GATC	2 cut(s)	347, 620
BstMBI	GATC	2 cut(s)	344, 617
BstMCI	CGRYCG	2 cut(s)	620, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	401, 544
BstSFI	CTRYAG	3 cut(s)	174, 204, 606
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	344
BstZI	CGGCCG	1 cut(s)	668
BsuRI	GGCC	6 cut(s)	429, 480, 572, 615, 670, 692
BtsCI	GGATG	3 cut(s)	169, 533, 705
BtsIMutI	CAGTG	4 cut(s)	232, 283, 585, 603
Cac8I	GCNNGC	2 cut(s)	112, 672
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	3 cut(s)	428, 613, 690
Csp6I	GTAC	2 cut(s)	268, 684
CviAII	CATG	3 cut(s)	12, 82, 100
CviQI	GTAC	2 cut(s)	268, 684
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	346, 619
DpnII	GATC	2 cut(s)	344, 617
EaeI	YGGCCR	1 cut(s)	668
EagI	CGGCCG	1 cut(s)	668
Eam1104I	CTCTTC	2 cut(s)	62, 669
EarI	CTCTTC	2 cut(s)	62, 669
EclXI	CGGCCG	1 cut(s)	668
Eco24I	GRGCYC	2 cut(s)	416, 551
Eco52I	CGGCCG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	503
EcoT38I	GRGCYC	2 cut(s)	416, 551
FaeI	CATG	3 cut(s)	15, 85, 103
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	3 cut(s)	11, 81, 99
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	2 cut(s)	176, 540
FriOI	GRGCYC	2 cut(s)	416, 551
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	4 cut(s)	318, 327, 681, 706
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	6 cut(s)	429, 480, 572, 615, 670, 692
HapII	CCGG	3 cut(s)	402, 545, 671
Hin1II	CATG	3 cut(s)	15, 85, 103
HinfI	GANTC	3 cut(s)	562, 631, 644
HpaII	CCGG	3 cut(s)	402, 545, 671
HphI	GGTGA	2 cut(s)	362, 404
Hpy166II	GTNNAC	2 cut(s)	268, 283
Hpy188I	TCNGA	3 cut(s)	476, 527, 649
Hpy188III	TCNNGA	4 cut(s)	342, 505, 578, 641
Hpy8I	GTNNAC	2 cut(s)	268, 283
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	4 cut(s)	85, 230, 603, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	3 cut(s)	15, 85, 103
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	344, 617
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	154, 690
MaeI	CTAG	4 cut(s)	318, 327, 681, 706
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	25, 676
MalI	GATC	2 cut(s)	346, 619
MboI	GATC	2 cut(s)	344, 617
MboII	GAAGA	4 cut(s)	29, 49, 67, 656
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	3 cut(s)	416, 504, 551
MluCI	AATT	2 cut(s)	221, 598
MnlI	CCTC	7 cut(s)	65, 89, 245, 271, 470, 503, 672
MroNI	GCCGGC	1 cut(s)	670
MseI	TTAA	3 cut(s)	423, 447, 540
MslI	CAYNNNNRTG	2 cut(s)	608, 698
MspI	CCGG	3 cut(s)	402, 545, 671
MspR9I	CCNGG	2 cut(s)	403, 546
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	30
NaeI	GCCGGC	1 cut(s)	672
NciI	CCSGG	2 cut(s)	403, 546
NdeII	GATC	2 cut(s)	344, 617
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	3 cut(s)	15, 85, 103
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	608
PctI	GAATGC	1 cut(s)	136
PdiI	GCCGGC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	562, 631, 644
PkrI	GCNGC	1 cut(s)	87
Ple19I	CGATCG	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	687
PspPI	GGNCC	3 cut(s)	428, 613, 690
PsuI	RGATCY	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	269, 685
RsaNI	GTAC	2 cut(s)	268, 684
RseI	CAYNNNNRTG	2 cut(s)	608, 698
SaqAI	TTAA	3 cut(s)	423, 447, 540
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	344, 617
Sau96I	GGNCC	3 cut(s)	428, 613, 690
ScrFI	CCNGG	2 cut(s)	403, 546
SduI	GDGCHC	3 cut(s)	416, 504, 551
SetI	ASST	9 cut(s)	35, 90, 181, 211, 237, 282, 363, 446, 689
SfaNI	GCATC	2 cut(s)	154, 690
SfcI	CTRYAG	3 cut(s)	174, 204, 606
SmiMI	CAYNNNNRTG	2 cut(s)	608, 698
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	2 cut(s)	221, 598
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	4 cut(s)	318, 327, 681, 706
StyD4I	CCNGG	2 cut(s)	401, 544
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	299, 555
TasI	AATT	2 cut(s)	221, 598
TfiI	GAWTC	3 cut(s)	562, 631, 644
Tru1I	TTAA	3 cut(s)	423, 447, 540
Tru9I	TTAA	3 cut(s)	423, 447, 540
TscAI	CASTG	4 cut(s)	232, 290, 592, 610
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	4 cut(s)	371, 409, 606, 644
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	4 cut(s)	232, 290, 592, 610
XspI	CTAG	4 cut(s)	318, 327, 681, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.