Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

79774183 .. 79774581

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG501300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTCTCCAATGTAGTGGATGCCATTGTAGGTAGCCTCTCTTTCTGTATCTTTGGATTCGCTTTTGCATTTGGAGAAGGCTCCAATTCCAACGCTTTCATTGGTACTAATTTCTTTGCTCTCAATGACATTCCCAGTAGCTCATCTTATGACTACAACTTCTTCATTTTCCAATGGGCATTTGCTATATCTGTTGCTGGCATAACAAGTGGTTCCATAGCTGAGAGAACCCAATTCAGTGCATACCTCATTTTCTCTTGTTTTCTGTCTGGGTTTGTGTACGCTGTGGTGGCTCACTGGGTTTGGTCATCAAGTGGTTGGCTCAATCCTAGTTTTGCTAGTTTCTTGCTATTTGGTTCTGGTGCTATTGACTTTGCGGGAGTGGTGTGGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

132

Amino Acids

14.32

Weight (kDa)

4.05

Isoelectric Point (pI)

14.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	1 - 127	8.3e-30	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AfaI	GTAC	2 cut(s)	106, 281
AluBI	AGCT	2 cut(s)	141, 221
AluI	AGCT	2 cut(s)	141, 221
BfaI	CTAG	2 cut(s)	330, 339
BmiI	GGNNCC	2 cut(s)	82, 214
BmrI	ACTGGG	2 cut(s)	129, 307
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	2 cut(s)	129, 307
Bse1I	ACTGG	2 cut(s)	135, 302
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	135, 302
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	82, 214
BsrI	ACTGG	2 cut(s)	135, 302
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	244, 295
Cac8I	GCNNGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	105, 280
CviJI	RGCY	6 cut(s)	36, 81, 141, 221, 293, 322
CviKI_1	RGCY	6 cut(s)	36, 81, 141, 221, 293, 322
CviQI	GTAC	2 cut(s)	105, 280
DdeI	CTNAG	1 cut(s)	222
FaiI	YATR	5 cut(s)	150, 188, 203, 218, 244
FauI	CCCGC	1 cut(s)	370
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	2 cut(s)	330, 339
HinfI	GANTC	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	68, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	148, 183, 255, 283, 345
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	330, 339
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	3 cut(s)	85, 109, 233
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	47, 257
MwoI	GCNNNNNNNGC	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	82, 214
PfeI	GAWTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	82, 214
RsaI	GTAC	2 cut(s)	106, 281
RsaNI	GTAC	2 cut(s)	105, 280
SetI	ASST	4 cut(s)	34, 143, 223, 249
SfaNI	GCATC	1 cut(s)	10
Sse9I	AATT	3 cut(s)	85, 109, 233
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	330, 339
TasI	AATT	3 cut(s)	85, 109, 233
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	2 cut(s)	244, 302
TspDTI	ATGAA	3 cut(s)	88, 154, 382
TspRI	CASTG	2 cut(s)	244, 302
XspI	CTAG	2 cut(s)	330, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.