Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001997.1

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

66383 .. 70581

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001997.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgaacaaattcatcaacgacatcttcgagaagctcgctcaggagtcgtcgaggctcgccaggtacaacaagaagccaacaattacttcccgggacatccagacggcggtgaggcttgtgcttcccggtgaattggctaagcatgctgtttctgaggggactaaggcgctcggctttgccatgctctgcgctggctctgttctatccaagaatgccacaaacataatgctctccaatgtagtggatgccattgtaggtagcctctctttctgtatctttggattcgcttttgcatttggagaaggctccaattccaacgctttcattggtactaatttctttgctctcaatgacattcccagtagctcatcttatgactacaacttcttcattttccaatgggcatttgctatatctgttgctggcataacaagtggttccatagctgagagaacccaattcagtgcatacctcattttctcttgttttctgtctgggtttgtgtacgctgtggtggctcactgggtttggtcatcaagtggttggctcaatcctagttttgctagtttcttgctatttggttctggtgctattgactttgcgggagtgtgggacattgggatgcactcaggggcggaaccaggatttgatctttggggggtagttccgtccctagatgcattcgatgtttgcaatggagtgcttggtgggtttgttgcaataacttccggatgtgcggtggttgagccatgcgccgcagttgtttgtggatttttcgccgcttgggtcttaattgggatgaatatcttggccctcaaacttcaatttgacgaccttttagaggcggcccaattacacggttggtgtggtgcttggggtttgatagttacaggcttgtttgcaaaggaggagtttgtggttcaagcctatgattcgggtgtgcttaacgttctgaggatctcagttgatgaagaaattgcaggtcttgatgtctgtagccatggaggccatgtacatgttaatacagacgagattcagcctcccttttatgcagaatatctgcctatgcgagaagatgggtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

361

Amino Acids

38.78

Weight (kDa)

4.61

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	7 cut(s)	107, 602, 635, 737, 756, 780, 845
AclI	AACGTT	1 cut(s)	948
AclWI	GGATC	1 cut(s)	965
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	4 cut(s)	65, 331, 506, 1014
AfiI	CCNNNNNNNGG	2 cut(s)	106, 841
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	2 cut(s)	824, 923
AjnI	CCWGG	2 cut(s)	59, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	3 cut(s)	34, 366, 446
AluI	AGCT	3 cut(s)	34, 366, 446
AlwI	GGATC	1 cut(s)	965
Ama87I	CYCGRG	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	3 cut(s)	810, 846, 1006
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	169, 191, 755
AspS9I	GGNCC	2 cut(s)	811, 847
AsuC2I	CCSGG	3 cut(s)	91, 92, 126
AsuHPI	GGTGA	2 cut(s)	121, 140
AvaI	CYCGRG	1 cut(s)	90
BccI	CCATC	1 cut(s)	1070
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	61, 642
BcnI	CCSGG	3 cut(s)	91, 92, 126
BfaI	CTAG	3 cut(s)	555, 564, 674
BfmI	CTRYAG	1 cut(s)	994
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	971
BglI	GCCNNNNNGGC	1 cut(s)	1005
BisI	GCNGC	3 cut(s)	756, 780, 846
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	3 cut(s)	757, 781, 847
Bme1390I	CCNGG	5 cut(s)	61, 91, 92, 126, 642
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	811, 847
BmiI	GGNNCC	3 cut(s)	307, 439, 639
BmrFI	CCNGG	5 cut(s)	61, 91, 92, 126, 642
BmrI	ACTGGG	2 cut(s)	354, 532
BmsI	GCATC	3 cut(s)	235, 612, 667
BmuI	ACTGGG	2 cut(s)	354, 532
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuMI	CCSGG	3 cut(s)	91, 92, 126
BsaBI	GATNNNNATC	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	90, 1000
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 841
Bse1I	ACTGG	2 cut(s)	360, 527
Bse3DI	GCAATG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	803
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	61, 642
BseDI	CCNNGG	2 cut(s)	90, 1000
BseGI	GGATG	5 cut(s)	96, 250, 627, 737, 804
BseJI	GATNNNNATC	1 cut(s)	803
BseLI	CCNNNNNNNGG	2 cut(s)	106, 841
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	6 cut(s)	53, 144, 438, 642, 944, 975
BseNI	ACTGG	2 cut(s)	360, 527
BseRI	GAGGAG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	812, 848, 1008
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	91, 126, 729
BslFI	GGGAC	4 cut(s)	107, 172, 626, 655
BslI	CCNNNNNNNGG	2 cut(s)	106, 841
BsmFI	GGGAC	4 cut(s)	107, 172, 626, 655
BsmI	GAATGC	2 cut(s)	217, 680
BsnI	GGCC	3 cut(s)	812, 848, 1008
BsoBI	CYCGRG	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	728
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	2 cut(s)	649, 957
Bsp1720I	GCTNAGC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	1000
BspACI	CCGC	7 cut(s)	107, 602, 635, 737, 756, 780, 845
BspANI	GGCC	3 cut(s)	812, 848, 1008
BspCNI	CTCAG	6 cut(s)	52, 145, 439, 641, 945, 974
BspEI	TCCGGA	1 cut(s)	728
BspHI	TCATGA	1 cut(s)	1082
BspLI	GGNNCC	3 cut(s)	307, 439, 639
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	700
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	2 cut(s)	360, 527
BssECI	CCNNGG	2 cut(s)	90, 1000
BssMI	GATC	2 cut(s)	649, 957
BssT1I	CCWWGG	1 cut(s)	1000
Bst2UI	CCWGG	2 cut(s)	61, 642
Bst4CI	ACNGT	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	1012
BstC8I	GCNNGC	5 cut(s)	36, 57, 144, 193, 424
BstDEI	CTNAG	8 cut(s)	39, 138, 153, 162, 447, 628, 953, 961
BstDSI	CCRYGG	1 cut(s)	1000
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstF5I	GGATG	5 cut(s)	96, 250, 627, 737, 804
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	169, 191, 755
BstKTI	GATC	2 cut(s)	652, 960
BstMBI	GATC	2 cut(s)	649, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 515, 1005
BstNI	CCWGG	2 cut(s)	61, 642
BstNSI	RCATGY	2 cut(s)	146, 1019
BstSCI	CCNGG	5 cut(s)	59, 89, 90, 124, 640
BstSFI	CTRYAG	1 cut(s)	994
BstX2I	RGATCY	1 cut(s)	957
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	957
BsuRI	GGCC	3 cut(s)	812, 848, 1008
BtgI	CCRYGG	1 cut(s)	1000
BtsCI	GGATG	5 cut(s)	96, 250, 627, 737, 804
BtsIMutI	CAGTG	2 cut(s)	469, 520
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	5 cut(s)	36, 57, 144, 193, 424
CciI	TCATGA	1 cut(s)	1082
CfoI	GCGC	3 cut(s)	169, 191, 755
Cfr13I	GGNCC	2 cut(s)	811, 847
Cfr9I	CCCGGG	1 cut(s)	90
Csp6I	GTAC	4 cut(s)	64, 330, 505, 1013
CviAII	CATG	7 cut(s)	143, 181, 750, 1001, 1010, 1016, 1083
CviQI	GTAC	4 cut(s)	64, 330, 505, 1013
DdeI	CTNAG	8 cut(s)	39, 138, 153, 162, 447, 628, 953, 961
DpnI	GATC	2 cut(s)	651, 959
DpnII	GATC	2 cut(s)	649, 957
EciI	GGCGGA	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	1000
Eco88I	CYCGRG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoRII	CCWGG	2 cut(s)	59, 640
EcoT14I	CCWWGG	1 cut(s)	1000
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	1000
FaeI	CATG	7 cut(s)	146, 184, 753, 1004, 1013, 1019, 1086
FaqI	GGGAC	4 cut(s)	107, 172, 626, 655
FatI	CATG	7 cut(s)	142, 180, 749, 1000, 1009, 1015, 1082
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	756, 780, 846
FokI	GGATG	5 cut(s)	83, 257, 634, 744, 811
Fsp4HI	GCNGC	3 cut(s)	756, 780, 846
FspBI	CTAG	3 cut(s)	555, 564, 674
GlaI	GCGC	3 cut(s)	168, 190, 754
GluI	GCNGC	3 cut(s)	756, 780, 846
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	812, 848, 1008
HapII	CCGG	3 cut(s)	91, 126, 729
HhaI	GCGC	3 cut(s)	169, 191, 755
Hin1II	CATG	7 cut(s)	146, 184, 753, 1004, 1013, 1019, 1086
Hin6I	GCGC	3 cut(s)	167, 189, 753
HinP1I	GCGC	3 cut(s)	167, 189, 753
HinfI	GANTC	4 cut(s)	44, 282, 932, 1033
HpaII	CCGG	3 cut(s)	91, 126, 729
HphI	GGTGA	2 cut(s)	121, 140
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	2 cut(s)	154, 954
Hpy188III	TCNNGA	6 cut(s)	28, 41, 100, 729, 986, 1083
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	860
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	9 cut(s)	293, 467, 625, 680, 693, 719, 902, 980, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 515, 1005
HpyF3I	CTNAG	8 cut(s)	39, 138, 153, 162, 447, 628, 953, 961
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	7 cut(s)	146, 184, 753, 1004, 1013, 1019, 1086
HspAI	GCGC	3 cut(s)	167, 189, 753
Kpn2I	TCCGGA	1 cut(s)	728
Kzo9I	GATC	2 cut(s)	649, 957
LmnI	GCTCC	1 cut(s)	311
LweI	GCATC	3 cut(s)	235, 612, 667
MaeI	CTAG	3 cut(s)	555, 564, 674
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	1 cut(s)	886
MalI	GATC	2 cut(s)	651, 959
MboI	GATC	2 cut(s)	649, 957
MboII	GAAGA	4 cut(s)	16, 379, 983, 1085
MflI	RGATCY	1 cut(s)	957
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	682
MroI	TCCGGA	1 cut(s)	728
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	791, 945, 1020
MslI	CAYNNNNRTG	2 cut(s)	620, 1014
MspI	CCGG	3 cut(s)	91, 126, 729
MspR9I	CCNGG	5 cut(s)	61, 91, 92, 126, 642
Mva1269I	GAATGC	2 cut(s)	217, 680
MvaI	CCWGG	2 cut(s)	61, 642
MwoI	GCNNNNNNNGC	3 cut(s)	143, 515, 1005
NciI	CCSGG	3 cut(s)	91, 92, 126
NcoI	CCATGG	1 cut(s)	1000
NdeII	GATC	2 cut(s)	649, 957
NlaIII	CATG	7 cut(s)	146, 184, 753, 1004, 1013, 1019, 1086
NlaIV	GGNNCC	3 cut(s)	307, 439, 639
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	2 cut(s)	146, 1019
PaeI	GCATGC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	1082
PciI	ACATGT	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	217, 680
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	282, 932, 1033
PkrI	GCNGC	3 cut(s)	757, 781, 847
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	1015
Psp1406I	AACGTT	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	59, 640
PspGI	CCWGG	2 cut(s)	59, 640
PspN4I	GGNNCC	3 cut(s)	307, 439, 639
PspPI	GGNCC	2 cut(s)	811, 847
PsuI	RGATCY	1 cut(s)	957
RsaI	GTAC	4 cut(s)	65, 331, 506, 1014
RsaNI	GTAC	4 cut(s)	64, 330, 505, 1013
RseI	CAYNNNNRTG	2 cut(s)	620, 1014
SaqAI	TTAA	3 cut(s)	791, 945, 1020
SatI	GCNGC	3 cut(s)	756, 780, 846
Sau3AI	GATC	2 cut(s)	649, 957
Sau96I	GGNCC	2 cut(s)	811, 847
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	5 cut(s)	61, 91, 92, 126, 642
SetI	ASST	9 cut(s)	36, 65, 259, 368, 448, 474, 837, 951, 985
SfaNI	GCATC	3 cut(s)	235, 612, 667
SfcI	CTRYAG	1 cut(s)	994
SmaI	CCCGGG	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	620, 1014
SphI	GCATGC	1 cut(s)	146
SsiI	CCGC	7 cut(s)	107, 602, 635, 737, 756, 780, 845
SspMI	CTAG	3 cut(s)	555, 564, 674
StyD4I	CCNGG	5 cut(s)	59, 89, 90, 124, 640
StyI	CCWWGG	1 cut(s)	1000
TaaI	ACNGT	1 cut(s)	860
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	3 cut(s)	27, 50, 684
TatI	WGTACW	1 cut(s)	1012
TauI	GCSGC	3 cut(s)	758, 782, 848
TfiI	GAWTC	3 cut(s)	282, 932, 1033
Tru1I	TTAA	3 cut(s)	791, 945, 1020
Tru9I	TTAA	3 cut(s)	791, 945, 1020
TscAI	CASTG	2 cut(s)	469, 527
TspDTI	ATGAA	5 cut(s)	17, 313, 379, 815, 984
TspGWI	ACGGA	1 cut(s)	657
TspMI	CCCGGG	1 cut(s)	90
TspRI	CASTG	2 cut(s)	469, 527
XagI	CCTNNNNNAGG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	146, 1019
XmaI	CCCGGG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	555, 564, 674
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.