Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011548

Physical Location & Seq

Genomic Coordinates Reverse (-)

78364868 .. 78366268

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTGGCAACATGGGAAGAAAGCGTGACAAGCTCCATCAACACCATCTATCTCCTCTTCTCTGCCTATCTTGTCTTCCTCATGCAGCTCGGCTTTGCCATGCTCTGCGCTGGCTCTGTTCGATGCAAGAATGCCACAAACATAATGCTCTCCAATGTAGTGGATGCCATTGTAGGTAGCCTCTCTTTCAATATCTTTGGATTTGCTTTTGCATTTGGAGAAGTCTCCAATTCCAACGCTTTCATTGGTACCAATTTCTTTGCTCTCAAAGACATTCCCAGTAGCTCATCTTATGACTACAGCTTCTTCCTTTTCCAATGGGGATTTGCTATAGCCTATAGCTGTTGCTGGCATAACAATGGTGTGGTTCATTTGGTCGGTGGGATTGCCGGGCTTTGGGGCTCTTTCATTGAAGGCCCAAGAGTGGGCAGGTTTAATGCGTTTTGGAAGCCCATACCAATCCGAGGCCATAACACTACCCTCGTGGTGCTCGGGACATTCCTGTTGTGGTTCGGATGGTTTTGGTTTAATCCGGGCTCGTTCGATAAGATTCTCGTGGCCTATCCAGACACCAATGATGAAGGGAATTGCACTGTAAAGTTCATAACCCTCTTTGACCGGCAGTTACTAGTACGTGGGCCATTGGGATGCACTAGATGTTGCAATGGAGTGCTTGGTGGGTTTATTGCAACAACCTCCGGATGTGCTGTGGTTGGGCTGTGTGCTGCAGTTGTTTGTGGATTCTTCGCTGGTTGGGTCTTAATTGGGCTGAATATCTTGGCCCTCAAACTTCAATTCGACGAATTGTTGGAGGCGACCAAATTACACGGTGGGTGTGGTGCTTGGGGTTTAGTATTTACAGGCTTGTTTGCAAAGGAGGAGTTTGTGGTGCAAGCCTATGATTCGGGTGTGGTTGGTACACAGCTCGGCCTTATGGCTTTGGTGGTTGTATCATTTGTATGCTGGGTTAGCTTCACAATGGGTCCTCGATTCTACACCCTTCACATGCTTAATGTTCTGAGGATCTCAGTTGATGAAGAAATTGCTAGTCTTGATGTCTCTAGCCATCGAGGCCATGCATATGTTAATACAGACAAGATTCAGCCACCCTTTTATGTAGAATATCTGCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

378

Amino Acids

41.46

Weight (kDa)

5.78

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	18 - 111	2.9e-20	Ammonium Transporter Family
Ammonium_transp	PF00909	120 - 361	4.5e-50	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38461
malus_domestica	MD11G1075400.v1.1
prunus_persica	Prupe.6G058300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069161 RchiOBHm_Chr5g0073441
rosa_laevigata	RLG00000036041
rosa_multiflora	Rmu_sc0000936.1_g000015 Rmu_sc0001997.1_g000014
rosa_rugosa	Rorug05G0396500
rosa_samantha	Rh5AG453300 Rh5AG480500 Rh5BG472500 Rh5BG501300 Rh5CG494900 Rh5CG524400 Rh5DG513600
rosa_wichuraiana	Rw0G006030 Rw5G042330 Rw5G044640 Rw5G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	698
AclWI	GGATC	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	250, 633, 919
AfiI	CCNNNNNNNGG	4 cut(s)	396, 424, 425, 464
AgsI	TTSAA	3 cut(s)	190, 413, 794
AhlI	ACTAGT	1 cut(s)	628
AluBI	AGCT	7 cut(s)	33, 88, 285, 303, 342, 925, 972
AluI	AGCT	7 cut(s)	33, 88, 285, 303, 342, 925, 972
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	229, 1063
AlwI	GGATC	1 cut(s)	1031
Ama87I	CYCGRG	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	7 cut(s)	415, 466, 558, 638, 780, 928, 1072
ApeKI	GCWGC	2 cut(s)	85, 725
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	416, 638, 781, 983
AsuC2I	CCSGG	2 cut(s)	391, 534
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	2 cut(s)	404, 539
BauI	CACGAG	2 cut(s)	482, 554
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	97, 712
BccI	CCATC	4 cut(s)	44, 53, 510, 1074
BcnI	CCSGG	2 cut(s)	391, 534
BcoDI	GTCTC	2 cut(s)	229, 1063
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	4 cut(s)	629, 654, 1047, 1062
BfmI	CTRYAG	4 cut(s)	298, 330, 337, 726
BfuAI	ACCTGC	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	1071
BisI	GCNGC	2 cut(s)	86, 726
BlsI	GCNGC	2 cut(s)	87, 727
Bme1390I	CCNGG	2 cut(s)	391, 534
Bme18I	GGWCC	1 cut(s)	983
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	4 cut(s)	416, 638, 781, 983
BmiI	GGNNCC	2 cut(s)	250, 984
BmrFI	CCNGG	2 cut(s)	391, 534
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	113, 154, 638
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	391, 534
BsaAI	YACGTR	1 cut(s)	635
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	4 cut(s)	396, 424, 425, 464
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	670
BseAI	TCCGGA	1 cut(s)	698
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	4 cut(s)	169, 521, 653, 707
BseLI	CCNNNNNNNGG	4 cut(s)	396, 424, 425, 464
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	1010, 1041
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	44, 893
BseXI	GCAGC	2 cut(s)	97, 712
BseYI	CCCAGC	1 cut(s)	963
BshFI	GGCC	7 cut(s)	417, 468, 560, 640, 782, 930, 1074
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	4 cut(s)	390, 533, 619, 699
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	4 cut(s)	396, 424, 425, 464
BsmAI	GTCTC	2 cut(s)	229, 1063
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	7 cut(s)	417, 468, 560, 640, 782, 930, 1074
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	3 cut(s)	404, 492, 539
Bsp13I	TCCGGA	1 cut(s)	698
Bsp143I	GATC	1 cut(s)	1023
BspANI	GGCC	7 cut(s)	417, 468, 560, 640, 782, 930, 1074
BspCNI	CTCAG	2 cut(s)	1011, 1040
BspEI	TCCGGA	1 cut(s)	698
BspLI	GGNNCC	2 cut(s)	250, 984
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	1023
BssSI	CACGAG	2 cut(s)	482, 554
Bst2BI	CACGAG	2 cut(s)	482, 554
Bst4CI	ACNGT	2 cut(s)	595, 830
Bst6I	CTCTTC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	112, 350, 894
BstDEI	CTNAG	2 cut(s)	1019, 1027
BstF5I	GGATG	4 cut(s)	169, 521, 653, 707
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	1026
BstMAI	GTCTC	2 cut(s)	229, 1063
BstMBI	GATC	1 cut(s)	1023
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 969, 1071
BstNSI	RCATGY	1 cut(s)	1009
BstSCI	CCNGG	2 cut(s)	389, 532
BstSFI	CTRYAG	4 cut(s)	298, 330, 337, 726
BstV1I	GCAGC	2 cut(s)	97, 712
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	1023
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	1023
BsuRI	GGCC	7 cut(s)	417, 468, 560, 640, 782, 930, 1074
BtsCI	GGATG	4 cut(s)	169, 521, 653, 707
BtsIMutI	CAGTG	1 cut(s)	591
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	112, 350, 894
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	4 cut(s)	416, 638, 781, 983
Csp6I	GTAC	3 cut(s)	249, 632, 918
CviAII	CATG	6 cut(s)	12, 82, 100, 1006, 1076, 1132
CviQI	GTAC	3 cut(s)	249, 632, 918
DdeI	CTNAG	2 cut(s)	1019, 1027
DpnI	GATC	1 cut(s)	1025
DpnII	GATC	1 cut(s)	1023
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco24I	GRGCYC	2 cut(s)	404, 539
Eco47I	GGWCC	1 cut(s)	983
Eco88I	CYCGRG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	983
EcoT22I	ATGCAT	1 cut(s)	1081
EcoT38I	GRGCYC	2 cut(s)	404, 539
FaeI	CATG	6 cut(s)	15, 85, 103, 1009, 1079, 1135
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	6 cut(s)	11, 81, 99, 1005, 1075, 1131
FauNDI	CATATG	1 cut(s)	1081
Fnu4HI	GCNGC	2 cut(s)	86, 726
FokI	GGATG	4 cut(s)	176, 528, 660, 714
FriOI	GRGCYC	2 cut(s)	404, 539
Fsp4HI	GCNGC	2 cut(s)	86, 726
FspBI	CTAG	4 cut(s)	629, 654, 1047, 1062
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	86, 726
GsaI	CCCAGC	1 cut(s)	967
HaeIII	GGCC	7 cut(s)	417, 468, 560, 640, 782, 930, 1074
HapII	CCGG	4 cut(s)	390, 533, 619, 699
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	15, 85, 103, 1009, 1079, 1135
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	550, 741, 902, 990, 1099
HpaII	CCGG	4 cut(s)	390, 533, 619, 699
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	3 cut(s)	464, 515, 1020
Hpy188III	TCNNGA	4 cut(s)	493, 566, 699, 1052
Hpy8I	GTNNAC	1 cut(s)	920
Hpy99I	CGWCG	1 cut(s)	803
HpyAV	CCTTC	3 cut(s)	407, 575, 1010
HpyCH4III	ACNGT	2 cut(s)	595, 830
HpyCH4IV	ACGT	1 cut(s)	634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 969, 1071
HpyF3I	CTNAG	2 cut(s)	1019, 1027
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	6 cut(s)	15, 85, 103, 1009, 1079, 1135
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	698
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	1023
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	97, 712
LweI	GCATC	3 cut(s)	113, 154, 638
MaeI	CTAG	4 cut(s)	629, 654, 1047, 1062
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	25, 624
MalI	GATC	1 cut(s)	1025
MboI	GATC	1 cut(s)	1023
MboII	GAAGA	6 cut(s)	29, 49, 67, 298, 736, 1049
MflI	RGATCY	1 cut(s)	1023
MhlI	GDGCHC	3 cut(s)	404, 492, 539
MluCI	AATT	8 cut(s)	229, 253, 586, 762, 794, 803, 821, 1041
MmeI	TCCRAC	2 cut(s)	258, 789
Mph1103I	ATGCAT	1 cut(s)	1081
MroI	TCCGGA	1 cut(s)	698
MseI	TTAA	5 cut(s)	435, 528, 761, 1011, 1086
MslI	CAYNNNNRTG	4 cut(s)	357, 646, 958, 1080
MspI	CCGG	4 cut(s)	390, 533, 619, 699
MspR9I	CCNGG	2 cut(s)	391, 534
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	30, 969, 1071
NciI	CCSGG	2 cut(s)	391, 534
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	1 cut(s)	1023
NlaIII	CATG	6 cut(s)	15, 85, 103, 1009, 1079, 1135
NlaIV	GGNNCC	2 cut(s)	250, 984
NmeAIII	GCCGAG	2 cut(s)	69, 906
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	1081
NspI	RCATGY	1 cut(s)	1009
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	5 cut(s)	550, 741, 902, 990, 1099
PkrI	GCNGC	2 cut(s)	87, 727
Ppu21I	YACGTR	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	983
Psp5II	RGGWCCY	1 cut(s)	983
PspFI	CCCAGC	1 cut(s)	963
PspN4I	GGNNCC	2 cut(s)	250, 984
PspPI	GGNCC	4 cut(s)	416, 638, 781, 983
PspPPI	RGGWCCY	1 cut(s)	983
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	1023
RsaI	GTAC	3 cut(s)	250, 633, 919
RsaNI	GTAC	3 cut(s)	249, 632, 918
RseI	CAYNNNNRTG	4 cut(s)	357, 646, 958, 1080
SaqAI	TTAA	5 cut(s)	435, 528, 761, 1011, 1086
SatI	GCNGC	2 cut(s)	86, 726
Sau3AI	GATC	1 cut(s)	1023
Sau96I	GGNCC	4 cut(s)	416, 638, 781, 983
ScrFI	CCNGG	2 cut(s)	391, 534
SduI	GDGCHC	3 cut(s)	404, 492, 539
SfaNI	GCATC	3 cut(s)	113, 154, 638
SfcI	CTRYAG	4 cut(s)	298, 330, 337, 726
SinI	GGWCC	1 cut(s)	983
SmiMI	CAYNNNNRTG	4 cut(s)	357, 646, 958, 1080
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	8 cut(s)	229, 253, 586, 762, 794, 803, 821, 1041
SspMI	CTAG	4 cut(s)	629, 654, 1047, 1062
StyD4I	CCNGG	2 cut(s)	389, 532
TaaI	ACNGT	2 cut(s)	595, 830
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	5 cut(s)	121, 543, 798, 988, 1069
TasI	AATT	8 cut(s)	229, 253, 586, 762, 794, 803, 821, 1041
TfiI	GAWTC	5 cut(s)	550, 741, 902, 990, 1099
Tru1I	TTAA	5 cut(s)	435, 528, 761, 1011, 1086
Tru9I	TTAA	5 cut(s)	435, 528, 761, 1011, 1086
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	85, 725
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	6 cut(s)	232, 359, 397, 592, 594, 1050
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	983
XceI	RCATGY	1 cut(s)	1009
XspI	CTAG	4 cut(s)	629, 654, 1047, 1062
Zsp2I	ATGCAT	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.