RchiOBHm_Chr6g0253131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018634
Physical Location & Seq
Forward (+)
8291457 .. 8292408
952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22697

Sequence Viewer

Length: 348 bp
ATGTTGGGCTCGATTGGAGAACTTATGCTTTTAAAATTGAATTGGCTGCAGATTTCTCCTTCTCTCCCTATTGGGCTGAGATTTTGCTCTACCTTTCCCACCTCGAAGTGTTACAGACACATTATGACAACAACGCCTGTGGGAAACAACGGAGATAGCATGGTTTGGCACCCCAAGGGAAGAGGGACATGCTACAGTTACTGCATAACAGAGCTTCTTCAAGCCAAGGCCAAAGTCATCACTGGAATAGAGGTTAAACTGTCTATTCCTCATGTTATCACCGGCTTAAGGGGCAGCGCACCTCCATGGAAAATGTGCTCGACTTTGCAAAATTTGAAGGAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.75

Weight (kDa)

9.43

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 288
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 40, 221, 337
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 201
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 46, 294
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 271
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 33, 306
BfmI CTRYAG 2 cut(s) 47, 193
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 47, 295
BlsI GCNGC 2 cut(s) 48, 296
BmiI GGNNCC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 174, 225, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 174, 225, 305
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 33, 306
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 11, 320
Bsp19I CCATGG 1 cut(s) 305
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 170
BspMAI CTGCAG 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 174, 225, 305
BssT1I CCWWGG 3 cut(s) 174, 225, 305
Bst4CI ACNGT 2 cut(s) 197, 261
Bst6I CTCTTC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 47, 193
BstV1I GCAGC 2 cut(s) 33, 306
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 4 cut(s) 160, 189, 272, 306
CviJI RGCY 7 cut(s) 9, 46, 76, 214, 224, 230, 285
CviKI_1 RGCY 7 cut(s) 9, 46, 76, 214, 224, 230, 285
DdeI CTNAG 1 cut(s) 77
DraI TTTAAA 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 3 cut(s) 174, 225, 305
Eco24I GRGCYC 1 cut(s) 11
EcoT14I CCWWGG 3 cut(s) 174, 225, 305
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 3 cut(s) 174, 225, 305
FaeI CATG 4 cut(s) 163, 192, 275, 309
FaiI YATR 7 cut(s) 26, 125, 161, 190, 206, 273, 307
FaqI GGGAC 1 cut(s) 199
FatI CATG 4 cut(s) 159, 188, 271, 305
Fnu4HI GCNGC 2 cut(s) 47, 295
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 47, 295
GlaI GCGC 1 cut(s) 298
GluI GCNGC 2 cut(s) 47, 295
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 299
Hin1II CATG 4 cut(s) 163, 192, 275, 309
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 69, 331
HpyCH4III ACNGT 2 cut(s) 197, 261
HpyCH4V TGCA 3 cut(s) 49, 204, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 4 cut(s) 163, 192, 275, 309
HspAI GCGC 1 cut(s) 297
LpnPI CCDG 3 cut(s) 150, 228, 295
Lsp1109I GCAGC 2 cut(s) 33, 306
MaeIII GTNAC 2 cut(s) 110, 197
MboII GAAGA 2 cut(s) 192, 209
MhlI GDGCHC 2 cut(s) 11, 320
MluCI AATT 3 cut(s) 35, 40, 331
MnlI CCTC 5 cut(s) 112, 176, 244, 279, 312
MseI TTAA 4 cut(s) 32, 255, 287, 346
MslI CAYNNNNRTG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 305
NlaIII CATG 4 cut(s) 163, 192, 275, 309
NlaIV GGNNCC 1 cut(s) 170
NspI RCATGY 1 cut(s) 192
PkrI GCNGC 2 cut(s) 48, 296
PspN4I GGNNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 304
SaqAI TTAA 4 cut(s) 32, 255, 287, 346
SatI GCNGC 2 cut(s) 47, 295
SduI GDGCHC 2 cut(s) 11, 320
SetI ASST 5 cut(s) 95, 104, 216, 255, 304
SfcI CTRYAG 2 cut(s) 47, 193
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 35, 40, 331
StyI CCWWGG 3 cut(s) 174, 225, 305
TaaI ACNGT 2 cut(s) 197, 261
TaqI TCGA 3 cut(s) 11, 104, 320
TasI AATT 3 cut(s) 35, 40, 331
Tru1I TTAA 4 cut(s) 32, 255, 287, 346
Tru9I TTAA 4 cut(s) 32, 255, 287, 346
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 46, 294
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 247
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.